POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM

Detalhes bibliográficos
Autor(a) principal: THUROW,LIANE BAHR
Data de Publicação: 2017
Outros Autores: RASEIRA,MARIA DO CARMO BASSOLS, BONOW,SANDRO, ARGE,LUIS WILLIAN PACHECO, CASTRO,CAROLINE MARQUES
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Revista brasileira de fruticultura (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-29452017000500802
Resumo: ABSTRACT Peach has great economic and social importance in Brazil. Diverse sources of germplasm were used to introduce desirable traits in the Brazilian peach breeding pool, composed mainly by local selections and accessions selected from populations developed by the national breeding programs, adapted to subtropical climate, with low chill requirement, as well as accessions introduced from several countries. In this research, we used SSR markers, selected by their high level of polymorphism, to access genetic diversity and population structure of a set composed by 204 peach selected genotypes, based on contrasting phenotypes for valuable traits in peach breeding. A total of 80 alleles were obtained, giving an average of eight alleles per locus. In general, the average value of observed heterozygosity (0.46) was lower than the expected heterozygosity (0.63). STRUCTURE analysis assigned 162 accessions splitted into two subpopulations based mainly on their flesh type: melting (96) and non-melting (66) flesh cultivars. The remaining accessions (42) could not be assigned under the 80% membership coefficient criteria. Genetic variability was greater in melting subpopulation compared to non-melting. Additionally, 55% of the alleles present in the breeding varieties were also present in the founder varieties, indicating that founding clones are well represented in current peach cultivars and advanced selections developed. Overall, this study gives a first insight of the peach genetic variability available and evidence for population differentiation (structure) in this peach panel to be exploited and provides the basis for genome-wide association studies.
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spelling POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASMPrunus persicagenetic diversitypopulation structurelow chill germplasmgenetic resourcesABSTRACT Peach has great economic and social importance in Brazil. Diverse sources of germplasm were used to introduce desirable traits in the Brazilian peach breeding pool, composed mainly by local selections and accessions selected from populations developed by the national breeding programs, adapted to subtropical climate, with low chill requirement, as well as accessions introduced from several countries. In this research, we used SSR markers, selected by their high level of polymorphism, to access genetic diversity and population structure of a set composed by 204 peach selected genotypes, based on contrasting phenotypes for valuable traits in peach breeding. A total of 80 alleles were obtained, giving an average of eight alleles per locus. In general, the average value of observed heterozygosity (0.46) was lower than the expected heterozygosity (0.63). STRUCTURE analysis assigned 162 accessions splitted into two subpopulations based mainly on their flesh type: melting (96) and non-melting (66) flesh cultivars. The remaining accessions (42) could not be assigned under the 80% membership coefficient criteria. Genetic variability was greater in melting subpopulation compared to non-melting. Additionally, 55% of the alleles present in the breeding varieties were also present in the founder varieties, indicating that founding clones are well represented in current peach cultivars and advanced selections developed. Overall, this study gives a first insight of the peach genetic variability available and evidence for population differentiation (structure) in this peach panel to be exploited and provides the basis for genome-wide association studies.Sociedade Brasileira de Fruticultura2017-12-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-29452017000500802Revista Brasileira de Fruticultura v.39 n.5 2017reponame:Revista brasileira de fruticultura (Online)instname:Sociedade Brasileira de Fruticultura (SBF)instacron:SBFRU10.1590/0100-29452017166info:eu-repo/semantics/openAccessTHUROW,LIANE BAHRRASEIRA,MARIA DO CARMO BASSOLSBONOW,SANDROARGE,LUIS WILLIAN PACHECOCASTRO,CAROLINE MARQUESeng2017-12-15T00:00:00Zoai:scielo:S0100-29452017000500802Revistahttp://www.scielo.br/rbfhttps://old.scielo.br/oai/scielo-oai.phprbf@fcav.unesp.br||http://rbf.org.br/1806-99670100-2945opendoar:2017-12-15T00:00Revista brasileira de fruticultura (Online) - Sociedade Brasileira de Fruticultura (SBF)false
dc.title.none.fl_str_mv POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM
title POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM
spellingShingle POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM
THUROW,LIANE BAHR
Prunus persica
genetic diversity
population structure
low chill germplasm
genetic resources
title_short POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM
title_full POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM
title_fullStr POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM
title_full_unstemmed POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM
title_sort POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM
author THUROW,LIANE BAHR
author_facet THUROW,LIANE BAHR
RASEIRA,MARIA DO CARMO BASSOLS
BONOW,SANDRO
ARGE,LUIS WILLIAN PACHECO
CASTRO,CAROLINE MARQUES
author_role author
author2 RASEIRA,MARIA DO CARMO BASSOLS
BONOW,SANDRO
ARGE,LUIS WILLIAN PACHECO
CASTRO,CAROLINE MARQUES
author2_role author
author
author
author
dc.contributor.author.fl_str_mv THUROW,LIANE BAHR
RASEIRA,MARIA DO CARMO BASSOLS
BONOW,SANDRO
ARGE,LUIS WILLIAN PACHECO
CASTRO,CAROLINE MARQUES
dc.subject.por.fl_str_mv Prunus persica
genetic diversity
population structure
low chill germplasm
genetic resources
topic Prunus persica
genetic diversity
population structure
low chill germplasm
genetic resources
description ABSTRACT Peach has great economic and social importance in Brazil. Diverse sources of germplasm were used to introduce desirable traits in the Brazilian peach breeding pool, composed mainly by local selections and accessions selected from populations developed by the national breeding programs, adapted to subtropical climate, with low chill requirement, as well as accessions introduced from several countries. In this research, we used SSR markers, selected by their high level of polymorphism, to access genetic diversity and population structure of a set composed by 204 peach selected genotypes, based on contrasting phenotypes for valuable traits in peach breeding. A total of 80 alleles were obtained, giving an average of eight alleles per locus. In general, the average value of observed heterozygosity (0.46) was lower than the expected heterozygosity (0.63). STRUCTURE analysis assigned 162 accessions splitted into two subpopulations based mainly on their flesh type: melting (96) and non-melting (66) flesh cultivars. The remaining accessions (42) could not be assigned under the 80% membership coefficient criteria. Genetic variability was greater in melting subpopulation compared to non-melting. Additionally, 55% of the alleles present in the breeding varieties were also present in the founder varieties, indicating that founding clones are well represented in current peach cultivars and advanced selections developed. Overall, this study gives a first insight of the peach genetic variability available and evidence for population differentiation (structure) in this peach panel to be exploited and provides the basis for genome-wide association studies.
publishDate 2017
dc.date.none.fl_str_mv 2017-12-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-29452017000500802
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-29452017000500802
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/0100-29452017166
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Fruticultura
publisher.none.fl_str_mv Sociedade Brasileira de Fruticultura
dc.source.none.fl_str_mv Revista Brasileira de Fruticultura v.39 n.5 2017
reponame:Revista brasileira de fruticultura (Online)
instname:Sociedade Brasileira de Fruticultura (SBF)
instacron:SBFRU
instname_str Sociedade Brasileira de Fruticultura (SBF)
instacron_str SBFRU
institution SBFRU
reponame_str Revista brasileira de fruticultura (Online)
collection Revista brasileira de fruticultura (Online)
repository.name.fl_str_mv Revista brasileira de fruticultura (Online) - Sociedade Brasileira de Fruticultura (SBF)
repository.mail.fl_str_mv rbf@fcav.unesp.br||http://rbf.org.br/
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