TaWRKY68 responses to biotic stresses are revealed by the orthologous genes from major cereals

Detalhes bibliográficos
Autor(a) principal: Ding,Bo
Data de Publicação: 2014
Outros Autores: Wang,Junbin, Song,Na, Li,Ming, Cheng,Qiaolin, Huang,Guozhong, Guo,Yaolin, Fu,Yang, Xie,Chaojie, Sun,Qixin, Xie,Xiaodong
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Genetics and Molecular Biology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572014000100013
Resumo: WRKY transcription factors have been extensively characterized in the past 20 years, but in wheat, studies onWRKY genes and their function are lagging behind many other species. To explore the function of wheat WRKY genes, we identified a TaWRKY68 gene from a common wheat cultivar. It encodes a protein comprising 313 amino acids which harbors 19 conserved motifs or active sites. Gene expression patterns were determined by analyzing microarray data of TaWRKY68 in wheat and of orthologous genes from maize, rice and barley using Genevestigator. TaWRKY68 orthologs were identified and clustered using DELTA-BLAST and COBALT programs available at NCBI. The results showed that these genes, which are expressed in all tissues tested, had relatively higher levels in the roots and were up-regulated in response to biotic stresses. Bioinformatics results were confirmed by RT-PCR experiments using wheat plants infected by Agrobacterium tumefaciens and Blumeria graminis, or treated with Deoxynivalenol, a Fusarium graminearum-induced mycotoxin in wheat or barley. In summary,TaWRKY68 functions differ during plant developmental stages and might be representing a hub gene function in wheat responses to various biotic stresses. It was also found that including data from major cereal genes in the bioinformatics analysis gave more accurate and comprehensive predictions of wheat gene functions.
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spelling TaWRKY68 responses to biotic stresses are revealed by the orthologous genes from major cerealswheatTaWRKY68Orthologous genesgenevestigatorgene functionsWRKY transcription factors have been extensively characterized in the past 20 years, but in wheat, studies onWRKY genes and their function are lagging behind many other species. To explore the function of wheat WRKY genes, we identified a TaWRKY68 gene from a common wheat cultivar. It encodes a protein comprising 313 amino acids which harbors 19 conserved motifs or active sites. Gene expression patterns were determined by analyzing microarray data of TaWRKY68 in wheat and of orthologous genes from maize, rice and barley using Genevestigator. TaWRKY68 orthologs were identified and clustered using DELTA-BLAST and COBALT programs available at NCBI. The results showed that these genes, which are expressed in all tissues tested, had relatively higher levels in the roots and were up-regulated in response to biotic stresses. Bioinformatics results were confirmed by RT-PCR experiments using wheat plants infected by Agrobacterium tumefaciens and Blumeria graminis, or treated with Deoxynivalenol, a Fusarium graminearum-induced mycotoxin in wheat or barley. In summary,TaWRKY68 functions differ during plant developmental stages and might be representing a hub gene function in wheat responses to various biotic stresses. It was also found that including data from major cereal genes in the bioinformatics analysis gave more accurate and comprehensive predictions of wheat gene functions.Sociedade Brasileira de Genética2014-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572014000100013Genetics and Molecular Biology v.37 n.1 2014reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/S1415-47572014000100013info:eu-repo/semantics/openAccessDing,BoWang,JunbinSong,NaLi,MingCheng,QiaolinHuang,GuozhongGuo,YaolinFu,YangXie,ChaojieSun,QixinXie,Xiaodongeng2014-03-24T00:00:00Zoai:scielo:S1415-47572014000100013Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2014-03-24T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false
dc.title.none.fl_str_mv TaWRKY68 responses to biotic stresses are revealed by the orthologous genes from major cereals
title TaWRKY68 responses to biotic stresses are revealed by the orthologous genes from major cereals
spellingShingle TaWRKY68 responses to biotic stresses are revealed by the orthologous genes from major cereals
Ding,Bo
wheat
TaWRKY68
Orthologous genes
genevestigator
gene functions
title_short TaWRKY68 responses to biotic stresses are revealed by the orthologous genes from major cereals
title_full TaWRKY68 responses to biotic stresses are revealed by the orthologous genes from major cereals
title_fullStr TaWRKY68 responses to biotic stresses are revealed by the orthologous genes from major cereals
title_full_unstemmed TaWRKY68 responses to biotic stresses are revealed by the orthologous genes from major cereals
title_sort TaWRKY68 responses to biotic stresses are revealed by the orthologous genes from major cereals
author Ding,Bo
author_facet Ding,Bo
Wang,Junbin
Song,Na
Li,Ming
Cheng,Qiaolin
Huang,Guozhong
Guo,Yaolin
Fu,Yang
Xie,Chaojie
Sun,Qixin
Xie,Xiaodong
author_role author
author2 Wang,Junbin
Song,Na
Li,Ming
Cheng,Qiaolin
Huang,Guozhong
Guo,Yaolin
Fu,Yang
Xie,Chaojie
Sun,Qixin
Xie,Xiaodong
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Ding,Bo
Wang,Junbin
Song,Na
Li,Ming
Cheng,Qiaolin
Huang,Guozhong
Guo,Yaolin
Fu,Yang
Xie,Chaojie
Sun,Qixin
Xie,Xiaodong
dc.subject.por.fl_str_mv wheat
TaWRKY68
Orthologous genes
genevestigator
gene functions
topic wheat
TaWRKY68
Orthologous genes
genevestigator
gene functions
description WRKY transcription factors have been extensively characterized in the past 20 years, but in wheat, studies onWRKY genes and their function are lagging behind many other species. To explore the function of wheat WRKY genes, we identified a TaWRKY68 gene from a common wheat cultivar. It encodes a protein comprising 313 amino acids which harbors 19 conserved motifs or active sites. Gene expression patterns were determined by analyzing microarray data of TaWRKY68 in wheat and of orthologous genes from maize, rice and barley using Genevestigator. TaWRKY68 orthologs were identified and clustered using DELTA-BLAST and COBALT programs available at NCBI. The results showed that these genes, which are expressed in all tissues tested, had relatively higher levels in the roots and were up-regulated in response to biotic stresses. Bioinformatics results were confirmed by RT-PCR experiments using wheat plants infected by Agrobacterium tumefaciens and Blumeria graminis, or treated with Deoxynivalenol, a Fusarium graminearum-induced mycotoxin in wheat or barley. In summary,TaWRKY68 functions differ during plant developmental stages and might be representing a hub gene function in wheat responses to various biotic stresses. It was also found that including data from major cereal genes in the bioinformatics analysis gave more accurate and comprehensive predictions of wheat gene functions.
publishDate 2014
dc.date.none.fl_str_mv 2014-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572014000100013
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572014000100013
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S1415-47572014000100013
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Genética
publisher.none.fl_str_mv Sociedade Brasileira de Genética
dc.source.none.fl_str_mv Genetics and Molecular Biology v.37 n.1 2014
reponame:Genetics and Molecular Biology
instname:Sociedade Brasileira de Genética (SBG)
instacron:SBG
instname_str Sociedade Brasileira de Genética (SBG)
instacron_str SBG
institution SBG
reponame_str Genetics and Molecular Biology
collection Genetics and Molecular Biology
repository.name.fl_str_mv Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)
repository.mail.fl_str_mv ||editor@gmb.org.br
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