Genetic structure and conservation of Mountain Lions in the South-Brazilian Atlantic Rain Forest

Detalhes bibliográficos
Autor(a) principal: Castilho,Camila S.
Data de Publicação: 2012
Outros Autores: Marins-Sá,Luiz G., Benedet,Rodrigo C., Freitas,Thales R.O.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Genetics and Molecular Biology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000100009
Resumo: The Brazilian Atlantic Rain Forest, one of the most endangered ecosystems worldwide, is also among the most important hotspots as regards biodiversity. Through intensive logging, the initial area has been reduced to around 12% of its original size. In this study we investigated the genetic variability and structure of the mountain lion, Puma concolor. Using 18 microsatellite loci we analyzed evidence of allele dropout, null alleles and stuttering, calculated the number of allele/locus, PIC, observed and expected heterozygosity, linkage disequilibrium, Hardy-Weinberg equilibrium, F IS, effective population size and genetic structure (MICROCHECKER, CERVUS, GENEPOP, FSTAT, ARLEQUIN, ONESAMP, LDNe, PCAGEN, GENECLASS software),we also determine whether there was evidence of a bottleneck (HYBRIDLAB, BOTTLENECK software) that might influence the future viability of the population in south Brazil. 106 alleles were identified, with the number of alleles/locus ranging from 2 to 11. Mean observed heterozygosity, mean number of alleles and polymorphism information content were 0.609, 5.89, and 0.6255, respectively. This population presented evidence of a recent bottleneck and loss of genetic variation. Persistent regional poaching constitutes an increasing in the extinction risk.
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spelling Genetic structure and conservation of Mountain Lions in the South-Brazilian Atlantic Rain ForestAraucaria ForestAtlantic Rain Forestconservationgenetic diversitymicrosatelliteThe Brazilian Atlantic Rain Forest, one of the most endangered ecosystems worldwide, is also among the most important hotspots as regards biodiversity. Through intensive logging, the initial area has been reduced to around 12% of its original size. In this study we investigated the genetic variability and structure of the mountain lion, Puma concolor. Using 18 microsatellite loci we analyzed evidence of allele dropout, null alleles and stuttering, calculated the number of allele/locus, PIC, observed and expected heterozygosity, linkage disequilibrium, Hardy-Weinberg equilibrium, F IS, effective population size and genetic structure (MICROCHECKER, CERVUS, GENEPOP, FSTAT, ARLEQUIN, ONESAMP, LDNe, PCAGEN, GENECLASS software),we also determine whether there was evidence of a bottleneck (HYBRIDLAB, BOTTLENECK software) that might influence the future viability of the population in south Brazil. 106 alleles were identified, with the number of alleles/locus ranging from 2 to 11. Mean observed heterozygosity, mean number of alleles and polymorphism information content were 0.609, 5.89, and 0.6255, respectively. This population presented evidence of a recent bottleneck and loss of genetic variation. Persistent regional poaching constitutes an increasing in the extinction risk.Sociedade Brasileira de Genética2012-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000100009Genetics and Molecular Biology v.35 n.1 2012reponame:Genetics and Molecular Biologyinstname:Sociedade Brasileira de Genética (SBG)instacron:SBG10.1590/S1415-47572011005000062info:eu-repo/semantics/openAccessCastilho,Camila S.Marins-Sá,Luiz G.Benedet,Rodrigo C.Freitas,Thales R.O.eng2012-03-28T00:00:00Zoai:scielo:S1415-47572012000100009Revistahttp://www.gmb.org.br/ONGhttps://old.scielo.br/oai/scielo-oai.php||editor@gmb.org.br1678-46851415-4757opendoar:2012-03-28T00:00Genetics and Molecular Biology - Sociedade Brasileira de Genética (SBG)false
dc.title.none.fl_str_mv Genetic structure and conservation of Mountain Lions in the South-Brazilian Atlantic Rain Forest
title Genetic structure and conservation of Mountain Lions in the South-Brazilian Atlantic Rain Forest
spellingShingle Genetic structure and conservation of Mountain Lions in the South-Brazilian Atlantic Rain Forest
Castilho,Camila S.
Araucaria Forest
Atlantic Rain Forest
conservation
genetic diversity
microsatellite
title_short Genetic structure and conservation of Mountain Lions in the South-Brazilian Atlantic Rain Forest
title_full Genetic structure and conservation of Mountain Lions in the South-Brazilian Atlantic Rain Forest
title_fullStr Genetic structure and conservation of Mountain Lions in the South-Brazilian Atlantic Rain Forest
title_full_unstemmed Genetic structure and conservation of Mountain Lions in the South-Brazilian Atlantic Rain Forest
title_sort Genetic structure and conservation of Mountain Lions in the South-Brazilian Atlantic Rain Forest
author Castilho,Camila S.
author_facet Castilho,Camila S.
Marins-Sá,Luiz G.
Benedet,Rodrigo C.
Freitas,Thales R.O.
author_role author
author2 Marins-Sá,Luiz G.
Benedet,Rodrigo C.
Freitas,Thales R.O.
author2_role author
author
author
dc.contributor.author.fl_str_mv Castilho,Camila S.
Marins-Sá,Luiz G.
Benedet,Rodrigo C.
Freitas,Thales R.O.
dc.subject.por.fl_str_mv Araucaria Forest
Atlantic Rain Forest
conservation
genetic diversity
microsatellite
topic Araucaria Forest
Atlantic Rain Forest
conservation
genetic diversity
microsatellite
description The Brazilian Atlantic Rain Forest, one of the most endangered ecosystems worldwide, is also among the most important hotspots as regards biodiversity. Through intensive logging, the initial area has been reduced to around 12% of its original size. In this study we investigated the genetic variability and structure of the mountain lion, Puma concolor. Using 18 microsatellite loci we analyzed evidence of allele dropout, null alleles and stuttering, calculated the number of allele/locus, PIC, observed and expected heterozygosity, linkage disequilibrium, Hardy-Weinberg equilibrium, F IS, effective population size and genetic structure (MICROCHECKER, CERVUS, GENEPOP, FSTAT, ARLEQUIN, ONESAMP, LDNe, PCAGEN, GENECLASS software),we also determine whether there was evidence of a bottleneck (HYBRIDLAB, BOTTLENECK software) that might influence the future viability of the population in south Brazil. 106 alleles were identified, with the number of alleles/locus ranging from 2 to 11. Mean observed heterozygosity, mean number of alleles and polymorphism information content were 0.609, 5.89, and 0.6255, respectively. This population presented evidence of a recent bottleneck and loss of genetic variation. Persistent regional poaching constitutes an increasing in the extinction risk.
publishDate 2012
dc.date.none.fl_str_mv 2012-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000100009
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000100009
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S1415-47572011005000062
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Genética
publisher.none.fl_str_mv Sociedade Brasileira de Genética
dc.source.none.fl_str_mv Genetics and Molecular Biology v.35 n.1 2012
reponame:Genetics and Molecular Biology
instname:Sociedade Brasileira de Genética (SBG)
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