Molecular Docking Studies of Curcumin Analogues against SARS-CoV-2 Spike Protein

Detalhes bibliográficos
Autor(a) principal: Nogueira,Jéssica R.
Data de Publicação: 2021
Outros Autores: Verza,Flávia A., Nishimura,Felipe, Das,Umashankar, Caruso,Ícaro P., Fachin,Ana L., Dimmock,Jonathan R., Marins,Mozart
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Journal of the Brazilian Chemical Society (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-50532021001001943
Resumo: Severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2) is the etiologic agent of the current pandemic of coronavirus disease 2019 (COVID-19) that has inflicted the loss of thousands of lives worldwide. The coronavirus surface spike (S) glycoprotein is a class I fusion with a S1 domain which is attached to the human angiotensin converting enzyme 2 (ACE2) receptor, and a S2 domain which enables fusion with the host cell membrane and internalization of the virus. Curcumin has been suggested as a potential drug to control inflammation and as a potential inhibitor of S protein, but its therapeutic effects are hampered by poor bioavailability. We performed a molecular docking and dynamic study using 94 curcumin analogues designed to have improved metabolic stability against the SARS-CoV-2 spike protein and compared their affinity with curcumin and other potential inhibitors. The docking analysis suggested that the S2 domain is the main target of these compounds and compound 2606 displayed a higher binding affinity (-9.6 kcal mol-1) than curcumin (-6.8 kcal mol-1) and the Food and Drug Administration (FDA) approved drug hydroxychloroquine (-6.3 kcal mol-1). Further additional validation in vitro and in vivo of these compounds against SARS-CoV-2 may provide insights into the development of a drug that prevents virus entry into host cells.
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spelling Molecular Docking Studies of Curcumin Analogues against SARS-CoV-2 Spike ProteinCOVID-19coronavirusSARScurcuminmolecular dockingSevere acute respiratory syndrome-coronavirus 2 (SARS-CoV-2) is the etiologic agent of the current pandemic of coronavirus disease 2019 (COVID-19) that has inflicted the loss of thousands of lives worldwide. The coronavirus surface spike (S) glycoprotein is a class I fusion with a S1 domain which is attached to the human angiotensin converting enzyme 2 (ACE2) receptor, and a S2 domain which enables fusion with the host cell membrane and internalization of the virus. Curcumin has been suggested as a potential drug to control inflammation and as a potential inhibitor of S protein, but its therapeutic effects are hampered by poor bioavailability. We performed a molecular docking and dynamic study using 94 curcumin analogues designed to have improved metabolic stability against the SARS-CoV-2 spike protein and compared their affinity with curcumin and other potential inhibitors. The docking analysis suggested that the S2 domain is the main target of these compounds and compound 2606 displayed a higher binding affinity (-9.6 kcal mol-1) than curcumin (-6.8 kcal mol-1) and the Food and Drug Administration (FDA) approved drug hydroxychloroquine (-6.3 kcal mol-1). Further additional validation in vitro and in vivo of these compounds against SARS-CoV-2 may provide insights into the development of a drug that prevents virus entry into host cells.Sociedade Brasileira de Química2021-10-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-50532021001001943Journal of the Brazilian Chemical Society v.32 n.10 2021reponame:Journal of the Brazilian Chemical Society (Online)instname:Sociedade Brasileira de Química (SBQ)instacron:SBQ10.21577/0103-5053.20210085info:eu-repo/semantics/openAccessNogueira,Jéssica R.Verza,Flávia A.Nishimura,FelipeDas,UmashankarCaruso,Ícaro P.Fachin,Ana L.Dimmock,Jonathan R.Marins,Mozarteng2021-09-28T00:00:00Zoai:scielo:S0103-50532021001001943Revistahttp://jbcs.sbq.org.brONGhttps://old.scielo.br/oai/scielo-oai.php||office@jbcs.sbq.org.br1678-47900103-5053opendoar:2021-09-28T00:00Journal of the Brazilian Chemical Society (Online) - Sociedade Brasileira de Química (SBQ)false
dc.title.none.fl_str_mv Molecular Docking Studies of Curcumin Analogues against SARS-CoV-2 Spike Protein
title Molecular Docking Studies of Curcumin Analogues against SARS-CoV-2 Spike Protein
spellingShingle Molecular Docking Studies of Curcumin Analogues against SARS-CoV-2 Spike Protein
Nogueira,Jéssica R.
COVID-19
coronavirus
SARS
curcumin
molecular docking
title_short Molecular Docking Studies of Curcumin Analogues against SARS-CoV-2 Spike Protein
title_full Molecular Docking Studies of Curcumin Analogues against SARS-CoV-2 Spike Protein
title_fullStr Molecular Docking Studies of Curcumin Analogues against SARS-CoV-2 Spike Protein
title_full_unstemmed Molecular Docking Studies of Curcumin Analogues against SARS-CoV-2 Spike Protein
title_sort Molecular Docking Studies of Curcumin Analogues against SARS-CoV-2 Spike Protein
author Nogueira,Jéssica R.
author_facet Nogueira,Jéssica R.
Verza,Flávia A.
Nishimura,Felipe
Das,Umashankar
Caruso,Ícaro P.
Fachin,Ana L.
Dimmock,Jonathan R.
Marins,Mozart
author_role author
author2 Verza,Flávia A.
Nishimura,Felipe
Das,Umashankar
Caruso,Ícaro P.
Fachin,Ana L.
Dimmock,Jonathan R.
Marins,Mozart
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Nogueira,Jéssica R.
Verza,Flávia A.
Nishimura,Felipe
Das,Umashankar
Caruso,Ícaro P.
Fachin,Ana L.
Dimmock,Jonathan R.
Marins,Mozart
dc.subject.por.fl_str_mv COVID-19
coronavirus
SARS
curcumin
molecular docking
topic COVID-19
coronavirus
SARS
curcumin
molecular docking
description Severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2) is the etiologic agent of the current pandemic of coronavirus disease 2019 (COVID-19) that has inflicted the loss of thousands of lives worldwide. The coronavirus surface spike (S) glycoprotein is a class I fusion with a S1 domain which is attached to the human angiotensin converting enzyme 2 (ACE2) receptor, and a S2 domain which enables fusion with the host cell membrane and internalization of the virus. Curcumin has been suggested as a potential drug to control inflammation and as a potential inhibitor of S protein, but its therapeutic effects are hampered by poor bioavailability. We performed a molecular docking and dynamic study using 94 curcumin analogues designed to have improved metabolic stability against the SARS-CoV-2 spike protein and compared their affinity with curcumin and other potential inhibitors. The docking analysis suggested that the S2 domain is the main target of these compounds and compound 2606 displayed a higher binding affinity (-9.6 kcal mol-1) than curcumin (-6.8 kcal mol-1) and the Food and Drug Administration (FDA) approved drug hydroxychloroquine (-6.3 kcal mol-1). Further additional validation in vitro and in vivo of these compounds against SARS-CoV-2 may provide insights into the development of a drug that prevents virus entry into host cells.
publishDate 2021
dc.date.none.fl_str_mv 2021-10-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-50532021001001943
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dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.21577/0103-5053.20210085
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.publisher.none.fl_str_mv Sociedade Brasileira de Química
publisher.none.fl_str_mv Sociedade Brasileira de Química
dc.source.none.fl_str_mv Journal of the Brazilian Chemical Society v.32 n.10 2021
reponame:Journal of the Brazilian Chemical Society (Online)
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