The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)

Bibliographic Details
Main Author: Majeske, Audrey
Publication Date: 2022
Other Authors: Mercado Capote, Alejandro J., Komissarov, Aleksey, Bogdanova, Anna, Schizas, Nikolaos V., Castro Márquez, Stephanie O., Hilkert, Kenneth, Wolfsberger, Walter, Oleksyk, Tarás K.
Format: preprint
Language: spa
Source: SciELO Preprints
Download full: https://preprints.scielo.org/index.php/scielo/preprint/view/5055
Summary: The mitochondrial genome of the long-spined black sea urchin, Diadema antillarum, was sequenced using Illumina next-generation sequencing technology. The complete mitogenome is 15,708 bp in length, containing two rRNA, 22 tRNA and 13 protein-coding genes, plus a noncoding control region of 133 bp. The nucleotide composition is 18.37% G, 23.79% C, 26.84% A and 30.99% T. The A + T bias is 57.84%. Phylogenetic analysis based on 12 complete mitochondrial genomes of sea urchins, including four species of the family Diadematidae, supported familial monophyly; however, the two Diadema species, D. antillarum and D. setosum were not recovered as sister taxa.
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spelling The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)El primer genoma mitocondrial completo de Diadema antillarum (Diadematoida, Diadematidae)mitogenomeechinoderminvertebratephylogenyblack sea urchinlong-spined sea urchinThe mitochondrial genome of the long-spined black sea urchin, Diadema antillarum, was sequenced using Illumina next-generation sequencing technology. The complete mitogenome is 15,708 bp in length, containing two rRNA, 22 tRNA and 13 protein-coding genes, plus a noncoding control region of 133 bp. The nucleotide composition is 18.37% G, 23.79% C, 26.84% A and 30.99% T. The A + T bias is 57.84%. Phylogenetic analysis based on 12 complete mitochondrial genomes of sea urchins, including four species of the family Diadematidae, supported familial monophyly; however, the two Diadema species, D. antillarum and D. setosum were not recovered as sister taxa.El genoma mitocondrial del erizo de mar negro de espinas largas, Diadema antillarum, se secuenció utilizando la tecnología de secuenciación de nueva generación de Illumina. El mitogenoma completo tiene un tamaño de 15,708 pb, que contiene dos ARNr, 22 ARNt y 13 genes codificadores de proteínas, además de una región de control no codificante de 133 pb. La composición de nucleótidos es 18.37% G, 23.79% C, 26.84% A y 30.99% T. El sesgo A+T es del 57.84%. El análisis filogenético basado en 12 genomas mitocondriales completos de erizos de mar, incluyendo cuatro especies de la familia Diadematidae, apoya la monofilia familiar. Sin embargo,  las dos especies de Diadema en este estudio,  D. antillarum y D. setosum no fueron identificadas como taxones hermanos.SciELO PreprintsSciELO PreprintsSciELO Preprints2022-11-17info:eu-repo/semantics/preprintinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://preprints.scielo.org/index.php/scielo/preprint/view/505510.1590/SciELOPreprints.5055spahttps://preprints.scielo.org/index.php/scielo/article/view/5055/9848Copyright (c) 2022 Audrey Majeske, Alejandro J. Mercado Capote, Aleksey Komissarov, Anna Bogdanova, Nikolaos V. Schizas, Stephanie O. Castro Márquez, Kenneth Hilkert, Walter Wolfsberger, Tarás K. Oleksykhttps://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessMajeske, AudreyMercado Capote, Alejandro J.Komissarov, AlekseyBogdanova, AnnaSchizas, Nikolaos V.Castro Márquez, Stephanie O.Hilkert, KennethWolfsberger, WalterOleksyk, Tarás K.reponame:SciELO Preprintsinstname:SciELOinstacron:SCI2022-11-11T22:12:13Zoai:ops.preprints.scielo.org:preprint/5055Servidor de preprintshttps://preprints.scielo.org/index.php/scieloONGhttps://preprints.scielo.org/index.php/scielo/oaiscielo.submission@scielo.orgopendoar:2022-11-11T22:12:13SciELO Preprints - SciELOfalse
dc.title.none.fl_str_mv The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)
El primer genoma mitocondrial completo de Diadema antillarum (Diadematoida, Diadematidae)
title The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)
spellingShingle The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)
Majeske, Audrey
mitogenome
echinoderm
invertebrate
phylogeny
black sea urchin
long-spined sea urchin
title_short The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)
title_full The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)
title_fullStr The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)
title_full_unstemmed The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)
title_sort The first complete mitochondrial genome of Diadema antillarum (Diadematoida, Diadematidae)
author Majeske, Audrey
author_facet Majeske, Audrey
Mercado Capote, Alejandro J.
Komissarov, Aleksey
Bogdanova, Anna
Schizas, Nikolaos V.
Castro Márquez, Stephanie O.
Hilkert, Kenneth
Wolfsberger, Walter
Oleksyk, Tarás K.
author_role author
author2 Mercado Capote, Alejandro J.
Komissarov, Aleksey
Bogdanova, Anna
Schizas, Nikolaos V.
Castro Márquez, Stephanie O.
Hilkert, Kenneth
Wolfsberger, Walter
Oleksyk, Tarás K.
author2_role author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Majeske, Audrey
Mercado Capote, Alejandro J.
Komissarov, Aleksey
Bogdanova, Anna
Schizas, Nikolaos V.
Castro Márquez, Stephanie O.
Hilkert, Kenneth
Wolfsberger, Walter
Oleksyk, Tarás K.
dc.subject.por.fl_str_mv mitogenome
echinoderm
invertebrate
phylogeny
black sea urchin
long-spined sea urchin
topic mitogenome
echinoderm
invertebrate
phylogeny
black sea urchin
long-spined sea urchin
description The mitochondrial genome of the long-spined black sea urchin, Diadema antillarum, was sequenced using Illumina next-generation sequencing technology. The complete mitogenome is 15,708 bp in length, containing two rRNA, 22 tRNA and 13 protein-coding genes, plus a noncoding control region of 133 bp. The nucleotide composition is 18.37% G, 23.79% C, 26.84% A and 30.99% T. The A + T bias is 57.84%. Phylogenetic analysis based on 12 complete mitochondrial genomes of sea urchins, including four species of the family Diadematidae, supported familial monophyly; however, the two Diadema species, D. antillarum and D. setosum were not recovered as sister taxa.
publishDate 2022
dc.date.none.fl_str_mv 2022-11-17
dc.type.driver.fl_str_mv info:eu-repo/semantics/preprint
info:eu-repo/semantics/publishedVersion
format preprint
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://preprints.scielo.org/index.php/scielo/preprint/view/5055
10.1590/SciELOPreprints.5055
url https://preprints.scielo.org/index.php/scielo/preprint/view/5055
identifier_str_mv 10.1590/SciELOPreprints.5055
dc.language.iso.fl_str_mv spa
language spa
dc.relation.none.fl_str_mv https://preprints.scielo.org/index.php/scielo/article/view/5055/9848
dc.rights.driver.fl_str_mv https://creativecommons.org/licenses/by/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv SciELO Preprints
SciELO Preprints
SciELO Preprints
publisher.none.fl_str_mv SciELO Preprints
SciELO Preprints
SciELO Preprints
dc.source.none.fl_str_mv reponame:SciELO Preprints
instname:SciELO
instacron:SCI
instname_str SciELO
instacron_str SCI
institution SCI
reponame_str SciELO Preprints
collection SciELO Preprints
repository.name.fl_str_mv SciELO Preprints - SciELO
repository.mail.fl_str_mv scielo.submission@scielo.org
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