Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil

Detalhes bibliográficos
Autor(a) principal: Albuquerque,Daniele Menezes
Data de Publicação: 2020
Outros Autores: Oliveira,Carlos Antonio Lopes de, Rodriguez,Maria Del Pilar Rodriguez, Ribeiro,Ricardo Pereira
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Revista ciência agronômica (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1806-66902020000100402
Resumo: ABSTRACT The aim of this study was to characterise genetic variability in five groups of Pseudoplatystoma reticulatum: Mato Grosso I (MT-I), Mato Grosso II (MT-II), Mato Grosso III (MT-III), Mato Grosso do Sul I (MS-I) and Mato Grosso do Sul II (MS-II), taken from a centre for genetic improvement. In order to determine the allelic frequency, observed heterozygosity (HO), inbreeding coefficients (FIS), Hardy-Weinberg equilibrium (HW-p) and genetic differentiation, eight polymorphic microsatellite loci (Pcor01, Pcor05, Pcor08, Pcor10, Ppu01, Ppu04, Ppu09 and Ppu10) were selected, in which a total of 62 alleles were observed in the individuals (n = 211). The MS-I population had the highest (Pcor08 allele 83: 0.5000) and lowest (Pcor10 allele 50: 0.1667) mean values for allele frequency. Higher (HO = 0.782; 0.782) and lower (FIS = 0.034; 0.061) values were found in groups MS-I and MT-III respectively. The HW-p showed that the five groups presented deviations for most of the loci under analysis. Finally, genetic differentiation pointed to the formation of two large genetic groups, one formed by the groups from Mato Grosso and the other by the groups from Mato Grosso do Sul. These measurements can help selection in a breeding program and maintain genetic variability.
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spelling Genetic variability in Pseudoplatystoma reticulatum from a breeding program in BrazilCacharaInbreeding coefficientAllelic FrequencyPopulation geneticsMicrosatellitesABSTRACT The aim of this study was to characterise genetic variability in five groups of Pseudoplatystoma reticulatum: Mato Grosso I (MT-I), Mato Grosso II (MT-II), Mato Grosso III (MT-III), Mato Grosso do Sul I (MS-I) and Mato Grosso do Sul II (MS-II), taken from a centre for genetic improvement. In order to determine the allelic frequency, observed heterozygosity (HO), inbreeding coefficients (FIS), Hardy-Weinberg equilibrium (HW-p) and genetic differentiation, eight polymorphic microsatellite loci (Pcor01, Pcor05, Pcor08, Pcor10, Ppu01, Ppu04, Ppu09 and Ppu10) were selected, in which a total of 62 alleles were observed in the individuals (n = 211). The MS-I population had the highest (Pcor08 allele 83: 0.5000) and lowest (Pcor10 allele 50: 0.1667) mean values for allele frequency. Higher (HO = 0.782; 0.782) and lower (FIS = 0.034; 0.061) values were found in groups MS-I and MT-III respectively. The HW-p showed that the five groups presented deviations for most of the loci under analysis. Finally, genetic differentiation pointed to the formation of two large genetic groups, one formed by the groups from Mato Grosso and the other by the groups from Mato Grosso do Sul. These measurements can help selection in a breeding program and maintain genetic variability.Universidade Federal do Ceará2020-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1806-66902020000100402Revista Ciência Agronômica v.51 n.1 2020reponame:Revista ciência agronômica (Online)instname:Universidade Federal do Ceará (UFC)instacron:UFC10.5935/1806-6690.20200007info:eu-repo/semantics/openAccessAlbuquerque,Daniele MenezesOliveira,Carlos Antonio Lopes deRodriguez,Maria Del Pilar RodriguezRibeiro,Ricardo Pereiraeng2020-01-29T00:00:00Zoai:scielo:S1806-66902020000100402Revistahttp://www.ccarevista.ufc.br/PUBhttps://old.scielo.br/oai/scielo-oai.php||alekdutra@ufc.br|| ccarev@ufc.br1806-66900045-6888opendoar:2020-01-29T00:00Revista ciência agronômica (Online) - Universidade Federal do Ceará (UFC)false
dc.title.none.fl_str_mv Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil
title Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil
spellingShingle Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil
Albuquerque,Daniele Menezes
Cachara
Inbreeding coefficient
Allelic Frequency
Population genetics
Microsatellites
title_short Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil
title_full Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil
title_fullStr Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil
title_full_unstemmed Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil
title_sort Genetic variability in Pseudoplatystoma reticulatum from a breeding program in Brazil
author Albuquerque,Daniele Menezes
author_facet Albuquerque,Daniele Menezes
Oliveira,Carlos Antonio Lopes de
Rodriguez,Maria Del Pilar Rodriguez
Ribeiro,Ricardo Pereira
author_role author
author2 Oliveira,Carlos Antonio Lopes de
Rodriguez,Maria Del Pilar Rodriguez
Ribeiro,Ricardo Pereira
author2_role author
author
author
dc.contributor.author.fl_str_mv Albuquerque,Daniele Menezes
Oliveira,Carlos Antonio Lopes de
Rodriguez,Maria Del Pilar Rodriguez
Ribeiro,Ricardo Pereira
dc.subject.por.fl_str_mv Cachara
Inbreeding coefficient
Allelic Frequency
Population genetics
Microsatellites
topic Cachara
Inbreeding coefficient
Allelic Frequency
Population genetics
Microsatellites
description ABSTRACT The aim of this study was to characterise genetic variability in five groups of Pseudoplatystoma reticulatum: Mato Grosso I (MT-I), Mato Grosso II (MT-II), Mato Grosso III (MT-III), Mato Grosso do Sul I (MS-I) and Mato Grosso do Sul II (MS-II), taken from a centre for genetic improvement. In order to determine the allelic frequency, observed heterozygosity (HO), inbreeding coefficients (FIS), Hardy-Weinberg equilibrium (HW-p) and genetic differentiation, eight polymorphic microsatellite loci (Pcor01, Pcor05, Pcor08, Pcor10, Ppu01, Ppu04, Ppu09 and Ppu10) were selected, in which a total of 62 alleles were observed in the individuals (n = 211). The MS-I population had the highest (Pcor08 allele 83: 0.5000) and lowest (Pcor10 allele 50: 0.1667) mean values for allele frequency. Higher (HO = 0.782; 0.782) and lower (FIS = 0.034; 0.061) values were found in groups MS-I and MT-III respectively. The HW-p showed that the five groups presented deviations for most of the loci under analysis. Finally, genetic differentiation pointed to the formation of two large genetic groups, one formed by the groups from Mato Grosso and the other by the groups from Mato Grosso do Sul. These measurements can help selection in a breeding program and maintain genetic variability.
publishDate 2020
dc.date.none.fl_str_mv 2020-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1806-66902020000100402
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1806-66902020000100402
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.5935/1806-6690.20200007
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Universidade Federal do Ceará
publisher.none.fl_str_mv Universidade Federal do Ceará
dc.source.none.fl_str_mv Revista Ciência Agronômica v.51 n.1 2020
reponame:Revista ciência agronômica (Online)
instname:Universidade Federal do Ceará (UFC)
instacron:UFC
instname_str Universidade Federal do Ceará (UFC)
instacron_str UFC
institution UFC
reponame_str Revista ciência agronômica (Online)
collection Revista ciência agronômica (Online)
repository.name.fl_str_mv Revista ciência agronômica (Online) - Universidade Federal do Ceará (UFC)
repository.mail.fl_str_mv ||alekdutra@ufc.br|| ccarev@ufc.br
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