Estimatição de eclosão em imagens de ovos do carrapato bovino baseado em redes neurais convolucionais

Detalhes bibliográficos
Autor(a) principal: SANTOS, Igor Silva
Data de Publicação: 2023
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UFMA
Texto Completo: https://tedebc.ufma.br/jspui/handle/tede/tede/4936
Resumo: The cattle tick is an ectoparasite that causes losses of more than 3 billion dollars annually in cattle farming in Brazil, either by the transmission of diseases or by the reduction in the quality of the derived products. The use of chemical acaricides is the most common form of control. To choose the most effective acaricide, tests are carried out in the laboratory. Engorged females are used as samples and immersed in commercial solutions of different chemical classes. The parameters evaluated include weight of females, egg laying and the percentage of hatchability of larvae, which is determined by counting fertile and infertile eggs. This counting process is usually performed manually, which consumes a lot of time and is repetitive and tiring, and therefore, this dissertation aims to automate this procedure. In this context, a computational method is proposed to account for and estimate the percentage of hatchability based on image processing and deep learning techniques, which follows the flow: pre-pocessing, slide extraction, egg segmentation; classification and counting of eggs. The method proposes a convolutional neural network architecture with the inclusion of soft attention mechanisms, called DenseNetSA, which was compared with other network architectures. The method achieves promising results with the DenseNetSA network for the group with 6 images, with 98% of fertile eggs and 88.67% of infertile eggs correctly classified. For the group with 3 images, 98% of the fertile eggs and 90.3% of the infertile eggs were correctly classified. The percentage of hatching presented the following values: 96.35% ± 3.33; 95.98% ± 3.5; 0.0% ± 0.0 for the groups with three images in the Piracanjuba, Desterro and Barbalha populations, respectively; and 94.41% ± 3.84; 95.93% ± 2.36; 0.0% ± 0.0 for the groups with six images in the Piracanjuba, Desterro and Barbalha populations, respectively. There was no statistical difference between the evaluated methods. The automatic method for predicting the hatching percentage of R. microplus larvae was validated and proved to be effective, with considerable reduction in time to obtain results.
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spelling SILVA, Aristófanes Corrêahttp://lattes.cnpq.br/2446301582459104COSTA JUNIOR, Livio Martinshttp://lattes.cnpq.br/6651961821189728SILVA, Aristófanes Corrêahttp://lattes.cnpq.br/2446301582459104COSTA JÚNIOR, Livio Martinshttp://lattes.cnpq.br/6651961821189728CAVALCANTE, André Borgeshttp://lattes.cnpq.br/3885279033465023LOPES, Welber Daniel Zanettihttp://lattes.cnpq.br/4480577038117234https://lattes.cnpq.br/8519873144812018SANTOS, Igor Silva2023-09-06T16:43:29Z2023-07-07SANTOS, Igor Silva. Estimatição de eclosão em imagens de ovos do carrapato bovino baseado em redes neurais convolucionais. 2023. 65 f. Dissertação (Programa de Pós-Graduação em Engenharia de Eletricidade/CCET) - Universidade Federal do Maranhão, São Luís, 2023.https://tedebc.ufma.br/jspui/handle/tede/tede/4936The cattle tick is an ectoparasite that causes losses of more than 3 billion dollars annually in cattle farming in Brazil, either by the transmission of diseases or by the reduction in the quality of the derived products. The use of chemical acaricides is the most common form of control. To choose the most effective acaricide, tests are carried out in the laboratory. Engorged females are used as samples and immersed in commercial solutions of different chemical classes. The parameters evaluated include weight of females, egg laying and the percentage of hatchability of larvae, which is determined by counting fertile and infertile eggs. This counting process is usually performed manually, which consumes a lot of time and is repetitive and tiring, and therefore, this dissertation aims to automate this procedure. In this context, a computational method is proposed to account for and estimate the percentage of hatchability based on image processing and deep learning techniques, which follows the flow: pre-pocessing, slide extraction, egg segmentation; classification and counting of eggs. The method proposes a convolutional neural network architecture with the inclusion of soft attention mechanisms, called DenseNetSA, which was compared with other network architectures. The method achieves promising results with the DenseNetSA network for the group with 6 images, with 98% of fertile eggs and 88.67% of infertile eggs correctly classified. For the group with 3 images, 98% of the fertile eggs and 90.3% of the infertile eggs were correctly classified. The percentage of hatching presented the following values: 96.35% ± 3.33; 95.98% ± 3.5; 0.0% ± 0.0 for the groups with three images in the Piracanjuba, Desterro and Barbalha populations, respectively; and 94.41% ± 3.84; 95.93% ± 2.36; 0.0% ± 0.0 for the groups with six images in the Piracanjuba, Desterro and Barbalha populations, respectively. There was no statistical difference between the evaluated methods. The automatic method for predicting the hatching percentage of R. microplus larvae was validated and proved to be effective, with considerable reduction in time to obtain results.O carrapato bovino é um ectoparasito que acarreta perdas acima de três bilhões de dólares anualmente na bovinocultura Brasileira, seja pela transmissão de doenças ou pela redução na qualidade nos produtos derivados. O uso de carrapaticidas químicos é a forma mais comum de controle. Para escolher o carrapaticida mais eficaz, testes são realizados em laboratório. Fêmeas ingurgitadas são utilizadas como amostras e imersas em soluções comerciais de carrapaticidas de diferentes classes químicas. Os parâmetros avaliados incluem peso das fêmeas, postura de ovos e a percentagem de eclodibilidade das larvas, que é determinada por contagem de ovos não eclodidos (inférteis) e larvas (férteis) após aproximadamente 45 dias do início. Esse processo de contagem é normalmente realizado manualmente, o que consome muito tempo e é repetitivo e cansativo, e por isso, a presente dissertação tem como objetivo a automação desse procedimento. Neste contexto propõe-se um método computacional para contabilizar e estimar o percentual de eclodibilidade baseado em técnicas de processamento de imagens e aprendizado de profundo, que segue o fluxo: pré-processamento, segmentação inicial, segmentação dos ovos; classificação e contagem dos ovos. O método propõe uma arquitetura de rede neural convolucional com a inclusão do mecanismo de atenção suave, denominado de DenseNetSA, que foi comparada com outras arquiteturas de rede. O método alcança resultados promissores com a rede DenseNetSA para o grupo com 6 imagens, com 98% dos ovos férteis e 88,67% dos ovos inférteis classificados corretamente. Para o grupo com 3 imagens, 98% dos ovos férteis e 90,3% dos ovos inférteis foram classificados corretamente. O percentual de eclosão apresentarou os seguintes valores: 96,35% ± 3,33; 95,98% ± 3,5; 0,0% ± 0,0 para os grupos com 3 imagens nas populações Piracanjuba, Desterro e Barbalha, respectivamente; e 94,41% ± 3,84; 95,93% ± 2,36; 0,0% ± 0,0 para os grupos com 6 imagens nas populações Piracanjuba, Desterro e Barbalha, respectivamente. Não houve diferença estatística entre os métodos avaliados. O método automático de predição da porcentagem de eclosão de larvas de R. microplus foi validado e mostrou-se eficaz, com considerável redução no tempo de obtenção dos resultados.Submitted by Jonathan Sousa de Almeida (jonathan.sousa@ufma.br) on 2023-09-06T16:43:29Z No. of bitstreams: 1 IGORSILVASANTOS.pdf: 11949621 bytes, checksum: 84a005d0b503ce22b93bbb8944939321 (MD5)Made available in DSpace on 2023-09-06T16:43:29Z (GMT). No. of bitstreams: 1 IGORSILVASANTOS.pdf: 11949621 bytes, checksum: 84a005d0b503ce22b93bbb8944939321 (MD5) Previous issue date: 2023-07-07FAPEMAapplication/pdfporUniversidade Federal do MaranhãoPROGRAMA DE PÓS-GRADUAÇÃO EM ENGENHARIA DE ELETRICIDADE/CCETUFMABrasilDEPARTAMENTO DE ENGENHARIA DA ELETRICIDADE/CCETaprendizagem profunda;ovos férteis;processamento de imagem;carrapato;atenção suave;deep learning;fertile eggs;image processing;tick;gentle attention.Ciência da ComputaçãoEngenharia AgrícolaEstimatição de eclosão em imagens de ovos do carrapato bovino baseado em redes neurais convolucionaisHatching estimation in bovine tick egg images based on convolutional neural networksinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações da UFMAinstname:Universidade Federal do Maranhão (UFMA)instacron:UFMAORIGINALIGORSILVASANTOS.pdfIGORSILVASANTOS.pdfapplication/pdf11949621http://tedebc.ufma.br:8080/bitstream/tede/4936/2/IGORSILVASANTOS.pdf84a005d0b503ce22b93bbb8944939321MD52LICENSElicense.txtlicense.txttext/plain; charset=utf-82255http://tedebc.ufma.br:8080/bitstream/tede/4936/1/license.txt97eeade1fce43278e63fe063657f8083MD51tede/49362023-09-06 13:43:29.877oai:tede2: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Biblioteca Digital de Teses e Dissertaçõeshttps://tedebc.ufma.br/jspui/PUBhttp://tedebc.ufma.br:8080/oai/requestrepositorio@ufma.br||repositorio@ufma.bropendoar:21312023-09-06T16:43:29Biblioteca Digital de Teses e Dissertações da UFMA - Universidade Federal do Maranhão (UFMA)false
dc.title.por.fl_str_mv Estimatição de eclosão em imagens de ovos do carrapato bovino baseado em redes neurais convolucionais
dc.title.alternative.eng.fl_str_mv Hatching estimation in bovine tick egg images based on convolutional neural networks
title Estimatição de eclosão em imagens de ovos do carrapato bovino baseado em redes neurais convolucionais
spellingShingle Estimatição de eclosão em imagens de ovos do carrapato bovino baseado em redes neurais convolucionais
SANTOS, Igor Silva
aprendizagem profunda;
ovos férteis;
processamento de imagem;
carrapato;
atenção suave;
deep learning;
fertile eggs;
image processing;
tick;
gentle attention.
Ciência da Computação
Engenharia Agrícola
title_short Estimatição de eclosão em imagens de ovos do carrapato bovino baseado em redes neurais convolucionais
title_full Estimatição de eclosão em imagens de ovos do carrapato bovino baseado em redes neurais convolucionais
title_fullStr Estimatição de eclosão em imagens de ovos do carrapato bovino baseado em redes neurais convolucionais
title_full_unstemmed Estimatição de eclosão em imagens de ovos do carrapato bovino baseado em redes neurais convolucionais
title_sort Estimatição de eclosão em imagens de ovos do carrapato bovino baseado em redes neurais convolucionais
author SANTOS, Igor Silva
author_facet SANTOS, Igor Silva
author_role author
dc.contributor.advisor1.fl_str_mv SILVA, Aristófanes Corrêa
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/2446301582459104
dc.contributor.advisor-co1.fl_str_mv COSTA JUNIOR, Livio Martins
dc.contributor.advisor-co1Lattes.fl_str_mv http://lattes.cnpq.br/6651961821189728
dc.contributor.referee1.fl_str_mv SILVA, Aristófanes Corrêa
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/2446301582459104
dc.contributor.referee2.fl_str_mv COSTA JÚNIOR, Livio Martins
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/6651961821189728
dc.contributor.referee3.fl_str_mv CAVALCANTE, André Borges
dc.contributor.referee3Lattes.fl_str_mv http://lattes.cnpq.br/3885279033465023
dc.contributor.referee4.fl_str_mv LOPES, Welber Daniel Zanetti
dc.contributor.referee4Lattes.fl_str_mv http://lattes.cnpq.br/4480577038117234
dc.contributor.authorLattes.fl_str_mv https://lattes.cnpq.br/8519873144812018
dc.contributor.author.fl_str_mv SANTOS, Igor Silva
contributor_str_mv SILVA, Aristófanes Corrêa
COSTA JUNIOR, Livio Martins
SILVA, Aristófanes Corrêa
COSTA JÚNIOR, Livio Martins
CAVALCANTE, André Borges
LOPES, Welber Daniel Zanetti
dc.subject.por.fl_str_mv aprendizagem profunda;
ovos férteis;
processamento de imagem;
carrapato;
atenção suave;
topic aprendizagem profunda;
ovos férteis;
processamento de imagem;
carrapato;
atenção suave;
deep learning;
fertile eggs;
image processing;
tick;
gentle attention.
Ciência da Computação
Engenharia Agrícola
dc.subject.eng.fl_str_mv deep learning;
fertile eggs;
image processing;
tick;
gentle attention.
dc.subject.cnpq.fl_str_mv Ciência da Computação
Engenharia Agrícola
description The cattle tick is an ectoparasite that causes losses of more than 3 billion dollars annually in cattle farming in Brazil, either by the transmission of diseases or by the reduction in the quality of the derived products. The use of chemical acaricides is the most common form of control. To choose the most effective acaricide, tests are carried out in the laboratory. Engorged females are used as samples and immersed in commercial solutions of different chemical classes. The parameters evaluated include weight of females, egg laying and the percentage of hatchability of larvae, which is determined by counting fertile and infertile eggs. This counting process is usually performed manually, which consumes a lot of time and is repetitive and tiring, and therefore, this dissertation aims to automate this procedure. In this context, a computational method is proposed to account for and estimate the percentage of hatchability based on image processing and deep learning techniques, which follows the flow: pre-pocessing, slide extraction, egg segmentation; classification and counting of eggs. The method proposes a convolutional neural network architecture with the inclusion of soft attention mechanisms, called DenseNetSA, which was compared with other network architectures. The method achieves promising results with the DenseNetSA network for the group with 6 images, with 98% of fertile eggs and 88.67% of infertile eggs correctly classified. For the group with 3 images, 98% of the fertile eggs and 90.3% of the infertile eggs were correctly classified. The percentage of hatching presented the following values: 96.35% ± 3.33; 95.98% ± 3.5; 0.0% ± 0.0 for the groups with three images in the Piracanjuba, Desterro and Barbalha populations, respectively; and 94.41% ± 3.84; 95.93% ± 2.36; 0.0% ± 0.0 for the groups with six images in the Piracanjuba, Desterro and Barbalha populations, respectively. There was no statistical difference between the evaluated methods. The automatic method for predicting the hatching percentage of R. microplus larvae was validated and proved to be effective, with considerable reduction in time to obtain results.
publishDate 2023
dc.date.accessioned.fl_str_mv 2023-09-06T16:43:29Z
dc.date.issued.fl_str_mv 2023-07-07
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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dc.identifier.citation.fl_str_mv SANTOS, Igor Silva. Estimatição de eclosão em imagens de ovos do carrapato bovino baseado em redes neurais convolucionais. 2023. 65 f. Dissertação (Programa de Pós-Graduação em Engenharia de Eletricidade/CCET) - Universidade Federal do Maranhão, São Luís, 2023.
dc.identifier.uri.fl_str_mv https://tedebc.ufma.br/jspui/handle/tede/tede/4936
identifier_str_mv SANTOS, Igor Silva. Estimatição de eclosão em imagens de ovos do carrapato bovino baseado em redes neurais convolucionais. 2023. 65 f. Dissertação (Programa de Pós-Graduação em Engenharia de Eletricidade/CCET) - Universidade Federal do Maranhão, São Luís, 2023.
url https://tedebc.ufma.br/jspui/handle/tede/tede/4936
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dc.publisher.program.fl_str_mv PROGRAMA DE PÓS-GRADUAÇÃO EM ENGENHARIA DE ELETRICIDADE/CCET
dc.publisher.initials.fl_str_mv UFMA
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv DEPARTAMENTO DE ENGENHARIA DA ELETRICIDADE/CCET
publisher.none.fl_str_mv Universidade Federal do Maranhão
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