Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2012 |
| Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | por |
| Título da fonte: | Repositório Institucional da UFPA |
| Texto Completo: | http://repositorio.ufpa.br:8080/jspui/handle/2011/15322 |
Resumo: | The Actinobacteria, Corynebacterium pseudotuberculosis strain P54B96, a nonmotile, non sporulating and a mesophile bacterium, was isolated from liver, lung and mediastinal lymph node lesions in an antelope from South Africa. This strain is interesting in the sense that it has been found together with non-tuberculous mycobacteria (NTMs) which could nevertheless play a role in the lesion formation. In this work, we describe a set of features of C. pseudotuberculosis P54B96, together with the details of the complete genome sequence and annotation. The genome comprises of 2.34 Mbp long, single circular genome with 2,084 protein-coding genes, 12 rRNA, 49 tRNA and 62 pseudogenes and a G+C content of 52.19%. The analysis of the genome se quence provides means to better understanding the molecular and genetic basis of virulence of this bacterium, enabling a detailed investigation of its pathogenesis. |
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2023-02-15T16:43:11Z2023-02-15T16:43:11Z2012HASSAN, Syed Shah et al. Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology. Standards in Genomic Sciences, online, v. 7, n. 2, p. 189-199, 2012. DOI: http://doi.org/10.4056/sigs.3066455. Disponível em: http://repositorio.ufpa.br/jspui/handle/2011/15322. Acesso em:.1944-3277http://repositorio.ufpa.br:8080/jspui/handle/2011/1532210.4056/sigs.3066455The Actinobacteria, Corynebacterium pseudotuberculosis strain P54B96, a nonmotile, non sporulating and a mesophile bacterium, was isolated from liver, lung and mediastinal lymph node lesions in an antelope from South Africa. This strain is interesting in the sense that it has been found together with non-tuberculous mycobacteria (NTMs) which could nevertheless play a role in the lesion formation. In this work, we describe a set of features of C. pseudotuberculosis P54B96, together with the details of the complete genome sequence and annotation. The genome comprises of 2.34 Mbp long, single circular genome with 2,084 protein-coding genes, 12 rRNA, 49 tRNA and 62 pseudogenes and a G+C content of 52.19%. The analysis of the genome se quence provides means to better understanding the molecular and genetic basis of virulence of this bacterium, enabling a detailed investigation of its pathogenesis.FAPESPA - Fundação Amazônia de Amparo a Estudos e PesquisasCNPq - Conselho Nacional de Desenvolvimento Científico e TecnológicoFAPEMIG - Fundação de Amparo à Pesquisa do Estado de Minas GeraisCAPES - Coordenação de Aperfeiçoamento de Pessoal de Nível SuperiorSCHNEIDER, M. P. C.; BARBOSA, M. S. R.; CARNEIRO, A. R.; CERDEIRA, L. T.; RAMOS, R. T. J. Universidade Federal do ParáporBioMed CentralReino UnidoStandards in Genomic Scienceshttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccesshttp://standardsingenomics.org/content/7/2/189/reponame:Repositório Institucional da UFPAinstname:Universidade Federal do Pará (UFPA)instacron:UFPACorynebacterium pseudotuberculosisComplete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technologyinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article72189199http://lattes.cnpq.br/2882537281050009http://lattes.cnpq.br/1991446268436258http://lattes.cnpq.br/1608947907609178http://lattes.cnpq.br/8793222334599763http://lattes.cnpq.br/5634819738325059http://lattes.cnpq.br/1595676816910750http://lattes.cnpq.br/1515059996734455http://lattes.cnpq.br/3752226356973936http://lattes.cnpq.br/4393381414254469http://lattes.cnpq.br/1504496062851809http://lattes.cnpq.br/9968280925772857http://lattes.cnpq.br/3901112943859155http://lattes.cnpq.br/5746245583555688http://lattes.cnpq.br/6389878370640685http://lattes.cnpq.br/2484200467965399http://lattes.cnpq.br/2016464855117057http://lattes.cnpq.br/7533716053525477http://lattes.cnpq.br/5673401428259684http://lattes.cnpq.br/6015497640149048http://lattes.cnpq.br/5207352332676542http://lattes.cnpq.br/9717412363973376http://lattes.cnpq.br/5292717604621046http://lattes.cnpq.br/1274395392752454http://lattes.cnpq.br/http://lattes.cnpq.br/2419194183390541http://lattes.cnpq.br/9326996169562214http://lattes.cnpq.br/9198272608157135http://lattes.cnpq.br/http://lattes.cnpq.br/7642043789034070http://lattes.cnpq.br/1020477751003832HASSAN, Syed ShahGUIMARÃES, Luís CarlosPEREIRA, Ulisses de PáduaISLAM, ArshadALI, AmjadBAKHTIAR, Syeda MarriamRIBEIRO, DayanaSANTOS, Anderson Rodrigues dosSOARES, Siomar de CastroDORELLA, Fernanda AlvesGOMIDE, Anne Cybelle PintoSCHNEIDER, Maria Paula CruzBARBOSA, Maria Silvanira RibeiroALMEIDA, Sintia Silva deABREU, Vinicius Augusto Carvalho deABURJAILE, Flavia FigueiraCARNEIRO, Adriana RibeiroCERDEIRA, Louise TeixeiraNASCIMENTO, Karina Kelly Fiaux doBARBOSA, Eudes Guilherme VieiraDINIZ, Carlos Augusto AlmeidaROCHA, Flávia de SouzaRAMOS, Rommel Thiago JucaJAIN, NehaTIWARI, SandeepBARH, DebmalyaMIYOSHI, AndersonMÜLLER, BornaSILVA, Artur Luiz da Costa daAZEVEDO, Vasco Ariston de Carvalhohttps://orcid.orghttps://orcid.orghttps://orcid.org/0000-0003-4868-4459https://orcid.orghttps://orcid.orghttps://orcid.orghttps://orcid.orghttps://orcid.org/0000-0003-3418-0823https://orcid.org/0000-0001-7299-3724https://orcid.org/0000-0003-1171-7106https://orcid.orghttps://orcid.org/0000-0002-2538-4827https://orcid.orghttps://orcid.org/0000-0003-0270-9059https://orcid.orghttps://orcid.org/0000-0002-1067-1882https://orcid.org/0000-0003-1522-9871https://orcid.org/0000-0002-4495-2615https://orcid.orghttps://orcid.orghttps://orcid.orghttps://orcid.orghttps://orcid.org/0000-0002-8032-1474https://orcid.orghttps://orcid.org/0000-0002-8554-1660https://orcid.orghttps://orcid.orghttps://orcid.orghttps://orcid.orghttps://orcid.org/0000-0002-4775-2280ORIGINALArticle_CompleteGenomeSequence.pdfArticle_CompleteGenomeSequence.pdfapplication/pdf944062http://repositorio.ufpa.br/oai/bitstream/2011/15322/1/Article_CompleteGenomeSequence.pdf637e8a7ba65e40c3d87a0a32ad2c14a9MD51CC-LICENSElicense_rdflicense_rdfapplication/rdf+xml; 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| dc.title.pt_BR.fl_str_mv |
Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology |
| title |
Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology |
| spellingShingle |
Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology HASSAN, Syed Shah Corynebacterium pseudotuberculosis |
| title_short |
Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology |
| title_full |
Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology |
| title_fullStr |
Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology |
| title_full_unstemmed |
Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology |
| title_sort |
Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology |
| author |
HASSAN, Syed Shah |
| author_facet |
HASSAN, Syed Shah GUIMARÃES, Luís Carlos PEREIRA, Ulisses de Pádua ISLAM, Arshad ALI, Amjad BAKHTIAR, Syeda Marriam RIBEIRO, Dayana SANTOS, Anderson Rodrigues dos SOARES, Siomar de Castro DORELLA, Fernanda Alves GOMIDE, Anne Cybelle Pinto SCHNEIDER, Maria Paula Cruz BARBOSA, Maria Silvanira Ribeiro ALMEIDA, Sintia Silva de ABREU, Vinicius Augusto Carvalho de ABURJAILE, Flavia Figueira CARNEIRO, Adriana Ribeiro CERDEIRA, Louise Teixeira NASCIMENTO, Karina Kelly Fiaux do BARBOSA, Eudes Guilherme Vieira DINIZ, Carlos Augusto Almeida ROCHA, Flávia de Souza RAMOS, Rommel Thiago Juca JAIN, Neha TIWARI, Sandeep BARH, Debmalya MIYOSHI, Anderson MÜLLER, Borna SILVA, Artur Luiz da Costa da AZEVEDO, Vasco Ariston de Carvalho https://orcid.org https://orcid.org/0000-0003-4868-4459 https://orcid.org/0000-0003-3418-0823 https://orcid.org/0000-0001-7299-3724 https://orcid.org/0000-0003-1171-7106 https://orcid.org/0000-0002-2538-4827 https://orcid.org/0000-0003-0270-9059 https://orcid.org/0000-0002-1067-1882 https://orcid.org/0000-0003-1522-9871 https://orcid.org/0000-0002-4495-2615 https://orcid.org/0000-0002-8032-1474 https://orcid.org/0000-0002-8554-1660 https://orcid.org/0000-0002-4775-2280 |
| author_role |
author |
| author2 |
GUIMARÃES, Luís Carlos PEREIRA, Ulisses de Pádua ISLAM, Arshad ALI, Amjad BAKHTIAR, Syeda Marriam RIBEIRO, Dayana SANTOS, Anderson Rodrigues dos SOARES, Siomar de Castro DORELLA, Fernanda Alves GOMIDE, Anne Cybelle Pinto SCHNEIDER, Maria Paula Cruz BARBOSA, Maria Silvanira Ribeiro ALMEIDA, Sintia Silva de ABREU, Vinicius Augusto Carvalho de ABURJAILE, Flavia Figueira CARNEIRO, Adriana Ribeiro CERDEIRA, Louise Teixeira NASCIMENTO, Karina Kelly Fiaux do BARBOSA, Eudes Guilherme Vieira DINIZ, Carlos Augusto Almeida ROCHA, Flávia de Souza RAMOS, Rommel Thiago Juca JAIN, Neha TIWARI, Sandeep BARH, Debmalya MIYOSHI, Anderson MÜLLER, Borna SILVA, Artur Luiz da Costa da AZEVEDO, Vasco Ariston de Carvalho https://orcid.org https://orcid.org/0000-0003-4868-4459 https://orcid.org/0000-0003-3418-0823 https://orcid.org/0000-0001-7299-3724 https://orcid.org/0000-0003-1171-7106 https://orcid.org/0000-0002-2538-4827 https://orcid.org/0000-0003-0270-9059 https://orcid.org/0000-0002-1067-1882 https://orcid.org/0000-0003-1522-9871 https://orcid.org/0000-0002-4495-2615 https://orcid.org/0000-0002-8032-1474 https://orcid.org/0000-0002-8554-1660 https://orcid.org/0000-0002-4775-2280 |
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author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
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| dc.contributor.author.fl_str_mv |
HASSAN, Syed Shah GUIMARÃES, Luís Carlos PEREIRA, Ulisses de Pádua ISLAM, Arshad ALI, Amjad BAKHTIAR, Syeda Marriam RIBEIRO, Dayana SANTOS, Anderson Rodrigues dos SOARES, Siomar de Castro DORELLA, Fernanda Alves GOMIDE, Anne Cybelle Pinto SCHNEIDER, Maria Paula Cruz BARBOSA, Maria Silvanira Ribeiro ALMEIDA, Sintia Silva de ABREU, Vinicius Augusto Carvalho de ABURJAILE, Flavia Figueira CARNEIRO, Adriana Ribeiro CERDEIRA, Louise Teixeira NASCIMENTO, Karina Kelly Fiaux do BARBOSA, Eudes Guilherme Vieira DINIZ, Carlos Augusto Almeida ROCHA, Flávia de Souza RAMOS, Rommel Thiago Juca JAIN, Neha TIWARI, Sandeep BARH, Debmalya MIYOSHI, Anderson MÜLLER, Borna SILVA, Artur Luiz da Costa da AZEVEDO, Vasco Ariston de Carvalho https://orcid.org https://orcid.org https://orcid.org/0000-0003-4868-4459 https://orcid.org https://orcid.org https://orcid.org https://orcid.org https://orcid.org/0000-0003-3418-0823 https://orcid.org/0000-0001-7299-3724 https://orcid.org/0000-0003-1171-7106 https://orcid.org https://orcid.org/0000-0002-2538-4827 https://orcid.org https://orcid.org/0000-0003-0270-9059 https://orcid.org https://orcid.org/0000-0002-1067-1882 https://orcid.org/0000-0003-1522-9871 https://orcid.org/0000-0002-4495-2615 https://orcid.org https://orcid.org https://orcid.org https://orcid.org https://orcid.org/0000-0002-8032-1474 https://orcid.org https://orcid.org/0000-0002-8554-1660 https://orcid.org https://orcid.org https://orcid.org https://orcid.org https://orcid.org/0000-0002-4775-2280 |
| dc.subject.por.fl_str_mv |
Corynebacterium pseudotuberculosis |
| topic |
Corynebacterium pseudotuberculosis |
| description |
The Actinobacteria, Corynebacterium pseudotuberculosis strain P54B96, a nonmotile, non sporulating and a mesophile bacterium, was isolated from liver, lung and mediastinal lymph node lesions in an antelope from South Africa. This strain is interesting in the sense that it has been found together with non-tuberculous mycobacteria (NTMs) which could nevertheless play a role in the lesion formation. In this work, we describe a set of features of C. pseudotuberculosis P54B96, together with the details of the complete genome sequence and annotation. The genome comprises of 2.34 Mbp long, single circular genome with 2,084 protein-coding genes, 12 rRNA, 49 tRNA and 62 pseudogenes and a G+C content of 52.19%. The analysis of the genome se quence provides means to better understanding the molecular and genetic basis of virulence of this bacterium, enabling a detailed investigation of its pathogenesis. |
| publishDate |
2012 |
| dc.date.issued.fl_str_mv |
2012 |
| dc.date.accessioned.fl_str_mv |
2023-02-15T16:43:11Z |
| dc.date.available.fl_str_mv |
2023-02-15T16:43:11Z |
| dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
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article |
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publishedVersion |
| dc.identifier.citation.fl_str_mv |
HASSAN, Syed Shah et al. Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology. Standards in Genomic Sciences, online, v. 7, n. 2, p. 189-199, 2012. DOI: http://doi.org/10.4056/sigs.3066455. Disponível em: http://repositorio.ufpa.br/jspui/handle/2011/15322. Acesso em:. |
| dc.identifier.uri.fl_str_mv |
http://repositorio.ufpa.br:8080/jspui/handle/2011/15322 |
| dc.identifier.issn.pt_BR.fl_str_mv |
1944-3277 |
| dc.identifier.doi.pt_BR.fl_str_mv |
10.4056/sigs.3066455 |
| identifier_str_mv |
HASSAN, Syed Shah et al. Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology. Standards in Genomic Sciences, online, v. 7, n. 2, p. 189-199, 2012. DOI: http://doi.org/10.4056/sigs.3066455. Disponível em: http://repositorio.ufpa.br/jspui/handle/2011/15322. Acesso em:. 1944-3277 10.4056/sigs.3066455 |
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http://repositorio.ufpa.br:8080/jspui/handle/2011/15322 |
| dc.language.iso.fl_str_mv |
por |
| language |
por |
| dc.relation.ispartof.pt_BR.fl_str_mv |
Standards in Genomic Sciences |
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http://creativecommons.org/licenses/by-nc-nd/3.0/br/ info:eu-repo/semantics/openAccess |
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http://creativecommons.org/licenses/by-nc-nd/3.0/br/ |
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openAccess |
| dc.publisher.none.fl_str_mv |
BioMed Central |
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Reino Unido |
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BioMed Central |
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reponame:Repositório Institucional da UFPA instname:Universidade Federal do Pará (UFPA) instacron:UFPA |
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Universidade Federal do Pará (UFPA) |
| instacron_str |
UFPA |
| institution |
UFPA |
| reponame_str |
Repositório Institucional da UFPA |
| collection |
Repositório Institucional da UFPA |
| dc.source.uri.pt_BR.fl_str_mv |
http://standardsingenomics.org/content/7/2/189/ |
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http://repositorio.ufpa.br/oai/bitstream/2011/15322/1/Article_CompleteGenomeSequence.pdf http://repositorio.ufpa.br/oai/bitstream/2011/15322/2/license_rdf http://repositorio.ufpa.br/oai/bitstream/2011/15322/3/license.txt |
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637e8a7ba65e40c3d87a0a32ad2c14a9 e39d27027a6cc9cb039ad269a5db8e34 2b55adef5313c442051bad36d3312b2b |
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MD5 MD5 MD5 |
| repository.name.fl_str_mv |
Repositório Institucional da UFPA - Universidade Federal do Pará (UFPA) |
| repository.mail.fl_str_mv |
riufpabc@ufpa.br |
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1797787968507740160 |