SNP markers associated with soybean partial resistance to Phytophthora sojae

Detalhes bibliográficos
Autor(a) principal: Ludke, Willian Hytalo
Data de Publicação: 2019
Outros Autores: Schuste, Ivan, Silva, Felipe Lopes da, Montecelli, Tatiane Dalla Nora, Soares, Bruno de Almeida, Oliveira, Aloizio Borém de, Volpato, Leonardo
Tipo de documento: Artigo
Idioma: eng
Título da fonte: LOCUS Repositório Institucional da UFV
Texto Completo: http://dx.doi.org/10.1590/1984-70332019v19n1a05
http://locus.ufv.br//handle/123456789/25738
Resumo: Phytophthora root and stem rot is one of the most aggressive diseases in soybean crop. The use of resistant cultivars is the main strategy to reduce losses caused by the pathogen. This study aims to identify SNP markers associated with genes or QTLs that provide soybean with partial resistance to Phytophthora sojae. A total of 169 soybean cultivars were inoculated with Phytophthora sojae and genotyped with 3,807 SNP markers. Genome-wide association analysis was carried out via multiple linear models, followed by multiple linear regression and linkage disequilibrium analysis. Four QTLs associated with the characteristic were identified: two on chromosome 3 and two on chromosome 15. The regions containing these QTLs contain genes already annotated as providers of resistance to pathogens, in plants. The use of those markers in the selection of resistant plants can increase the efficiency of breeding programs in the development of soybean varieties resistant to P. sojae.
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spelling Ludke, Willian HytaloSchuste, IvanSilva, Felipe Lopes daMontecelli, Tatiane Dalla NoraSoares, Bruno de AlmeidaOliveira, Aloizio Borém deVolpato, Leonardo2019-06-07T13:58:30Z2019-06-07T13:58:30Z2019-0119847033http://dx.doi.org/10.1590/1984-70332019v19n1a05http://locus.ufv.br//handle/123456789/25738Phytophthora root and stem rot is one of the most aggressive diseases in soybean crop. The use of resistant cultivars is the main strategy to reduce losses caused by the pathogen. This study aims to identify SNP markers associated with genes or QTLs that provide soybean with partial resistance to Phytophthora sojae. A total of 169 soybean cultivars were inoculated with Phytophthora sojae and genotyped with 3,807 SNP markers. Genome-wide association analysis was carried out via multiple linear models, followed by multiple linear regression and linkage disequilibrium analysis. Four QTLs associated with the characteristic were identified: two on chromosome 3 and two on chromosome 15. The regions containing these QTLs contain genes already annotated as providers of resistance to pathogens, in plants. The use of those markers in the selection of resistant plants can increase the efficiency of breeding programs in the development of soybean varieties resistant to P. sojae.engCrop Breeding and Applied Biotechnologyv. 19, n. 01, p. 31- 39, jan./ mar. 2019Glycine max (L.) MerriPhytophthora root and stem rotSNPGWASLinkage disequilibriumSNP markers associated with soybean partial resistance to Phytophthora sojaeinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfinfo:eu-repo/semantics/openAccessreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALartigo.pdfartigo.pdftexto completoapplication/pdf919948https://locus.ufv.br//bitstream/123456789/25738/1/artigo.pdfd07f6025674a310b94106b82e710ce64MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://locus.ufv.br//bitstream/123456789/25738/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52123456789/257382019-06-07 11:17:06.565oai:locus.ufv.br:123456789/25738Tk9URTogUExBQ0UgWU9VUiBPV04gTElDRU5TRSBIRVJFClRoaXMgc2FtcGxlIGxpY2Vuc2UgaXMgcHJvdmlkZWQgZm9yIGluZm9ybWF0aW9uYWwgcHVycG9zZXMgb25seS4KCk5PTi1FWENMVVNJVkUgRElTVFJJQlVUSU9OIExJQ0VOU0UKCkJ5IHNpZ25pbmcgYW5kIHN1Ym1pdHRpbmcgdGhpcyBsaWNlbnNlLCB5b3UgKHRoZSBhdXRob3Iocykgb3IgY29weXJpZ2h0Cm93bmVyKSBncmFudHMgdG8gRFNwYWNlIFVuaXZlcnNpdHkgKERTVSkgdGhlIG5vbi1leGNsdXNpdmUgcmlnaHQgdG8gcmVwcm9kdWNlLAp0cmFuc2xhdGUgKGFzIGRlZmluZWQgYmVsb3cpLCBhbmQvb3IgZGlzdHJpYnV0ZSB5b3VyIHN1Ym1pc3Npb24gKGluY2x1ZGluZwp0aGUgYWJzdHJhY3QpIHdvcmxkd2lkZSBpbiBwcmludCBhbmQgZWxlY3Ryb25pYyBmb3JtYXQgYW5kIGluIGFueSBtZWRpdW0sCmluY2x1ZGluZyBidXQgbm90IGxpbWl0ZWQgdG8gYXVkaW8gb3IgdmlkZW8uCgpZb3UgYWdyZWUgdGhhdCBEU1UgbWF5LCB3aXRob3V0IGNoYW5naW5nIHRoZSBjb250ZW50LCB0cmFuc2xhdGUgdGhlCnN1Ym1pc3Npb24gdG8gYW55IG1lZGl1bSBvciBmb3JtYXQgZm9yIHRoZSBwdXJwb3NlIG9mIHByZXNlcnZhdGlvbi4KCllvdSBhbHNvIGFncmVlIHRoYXQgRFNVIG1heSBrZWVwIG1vcmUgdGhhbiBvbmUgY29weSBvZiB0aGlzIHN1Ym1pc3Npb24gZm9yCnB1cnBvc2VzIG9mIHNlY3VyaXR5LCBiYWNrLXVwIGFuZCBwcmVzZXJ2YXRpb24uCgpZb3UgcmVwcmVzZW50IHRoYXQgdGhlIHN1Ym1pc3Npb24gaXMgeW91ciBvcmlnaW5hbCB3b3JrLCBhbmQgdGhhdCB5b3UgaGF2ZQp0aGUgcmlnaHQgdG8gZ3JhbnQgdGhlIHJpZ2h0cyBjb250YWluZWQgaW4gdGhpcyBsaWNlbnNlLiBZb3UgYWxzbyByZXByZXNlbnQKdGhhdCB5b3VyIHN1Ym1pc3Npb24gZG9lcyBub3QsIHRvIHRoZSBiZXN0IG9mIHlvdXIga25vd2xlZGdlLCBpbmZyaW5nZSB1cG9uCmFueW9uZSdzIGNvcHlyaWdodC4KCklmIHRoZSBzdWJtaXNzaW9uIGNvbnRhaW5zIG1hdGVyaWFsIGZvciB3aGljaCB5b3UgZG8gbm90IGhvbGQgY29weXJpZ2h0LAp5b3UgcmVwcmVzZW50IHRoYXQgeW91IGhhdmUgb2J0YWluZWQgdGhlIHVucmVzdHJpY3RlZCBwZXJtaXNzaW9uIG9mIHRoZQpjb3B5cmlnaHQgb3duZXIgdG8gZ3JhbnQgRFNVIHRoZSByaWdodHMgcmVxdWlyZWQgYnkgdGhpcyBsaWNlbnNlLCBhbmQgdGhhdApzdWNoIHRoaXJkLXBhcnR5IG93bmVkIG1hdGVyaWFsIGlzIGNsZWFybHkgaWRlbnRpZmllZCBhbmQgYWNrbm93bGVkZ2VkCndpdGhpbiB0aGUgdGV4dCBvciBjb250ZW50IG9mIHRoZSBzdWJtaXNzaW9uLgoKSUYgVEhFIFNVQk1JU1NJT04gSVMgQkFTRUQgVVBPTiBXT1JLIFRIQVQgSEFTIEJFRU4gU1BPTlNPUkVEIE9SIFNVUFBPUlRFRApCWSBBTiBBR0VOQ1kgT1IgT1JHQU5JWkFUSU9OIE9USEVSIFRIQU4gRFNVLCBZT1UgUkVQUkVTRU5UIFRIQVQgWU9VIEhBVkUKRlVMRklMTEVEIEFOWSBSSUdIVCBPRiBSRVZJRVcgT1IgT1RIRVIgT0JMSUdBVElPTlMgUkVRVUlSRUQgQlkgU1VDSApDT05UUkFDVCBPUiBBR1JFRU1FTlQuCgpEU1Ugd2lsbCBjbGVhcmx5IGlkZW50aWZ5IHlvdXIgbmFtZShzKSBhcyB0aGUgYXV0aG9yKHMpIG9yIG93bmVyKHMpIG9mIHRoZQpzdWJtaXNzaW9uLCBhbmQgd2lsbCBub3QgbWFrZSBhbnkgYWx0ZXJhdGlvbiwgb3RoZXIgdGhhbiBhcyBhbGxvd2VkIGJ5IHRoaXMKbGljZW5zZSwgdG8geW91ciBzdWJtaXNzaW9uLgo=Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452019-06-07T14:17:06LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false
dc.title.en.fl_str_mv SNP markers associated with soybean partial resistance to Phytophthora sojae
title SNP markers associated with soybean partial resistance to Phytophthora sojae
spellingShingle SNP markers associated with soybean partial resistance to Phytophthora sojae
Ludke, Willian Hytalo
Glycine max (L.) Merri
Phytophthora root and stem rot
SNP
GWAS
Linkage disequilibrium
title_short SNP markers associated with soybean partial resistance to Phytophthora sojae
title_full SNP markers associated with soybean partial resistance to Phytophthora sojae
title_fullStr SNP markers associated with soybean partial resistance to Phytophthora sojae
title_full_unstemmed SNP markers associated with soybean partial resistance to Phytophthora sojae
title_sort SNP markers associated with soybean partial resistance to Phytophthora sojae
author Ludke, Willian Hytalo
author_facet Ludke, Willian Hytalo
Schuste, Ivan
Silva, Felipe Lopes da
Montecelli, Tatiane Dalla Nora
Soares, Bruno de Almeida
Oliveira, Aloizio Borém de
Volpato, Leonardo
author_role author
author2 Schuste, Ivan
Silva, Felipe Lopes da
Montecelli, Tatiane Dalla Nora
Soares, Bruno de Almeida
Oliveira, Aloizio Borém de
Volpato, Leonardo
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Ludke, Willian Hytalo
Schuste, Ivan
Silva, Felipe Lopes da
Montecelli, Tatiane Dalla Nora
Soares, Bruno de Almeida
Oliveira, Aloizio Borém de
Volpato, Leonardo
dc.subject.pt-BR.fl_str_mv Glycine max (L.) Merri
Phytophthora root and stem rot
SNP
GWAS
Linkage disequilibrium
topic Glycine max (L.) Merri
Phytophthora root and stem rot
SNP
GWAS
Linkage disequilibrium
description Phytophthora root and stem rot is one of the most aggressive diseases in soybean crop. The use of resistant cultivars is the main strategy to reduce losses caused by the pathogen. This study aims to identify SNP markers associated with genes or QTLs that provide soybean with partial resistance to Phytophthora sojae. A total of 169 soybean cultivars were inoculated with Phytophthora sojae and genotyped with 3,807 SNP markers. Genome-wide association analysis was carried out via multiple linear models, followed by multiple linear regression and linkage disequilibrium analysis. Four QTLs associated with the characteristic were identified: two on chromosome 3 and two on chromosome 15. The regions containing these QTLs contain genes already annotated as providers of resistance to pathogens, in plants. The use of those markers in the selection of resistant plants can increase the efficiency of breeding programs in the development of soybean varieties resistant to P. sojae.
publishDate 2019
dc.date.accessioned.fl_str_mv 2019-06-07T13:58:30Z
dc.date.available.fl_str_mv 2019-06-07T13:58:30Z
dc.date.issued.fl_str_mv 2019-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1590/1984-70332019v19n1a05
http://locus.ufv.br//handle/123456789/25738
dc.identifier.issn.none.fl_str_mv 19847033
identifier_str_mv 19847033
url http://dx.doi.org/10.1590/1984-70332019v19n1a05
http://locus.ufv.br//handle/123456789/25738
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartofseries.pt-BR.fl_str_mv v. 19, n. 01, p. 31- 39, jan./ mar. 2019
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Crop Breeding and Applied Biotechnology
publisher.none.fl_str_mv Crop Breeding and Applied Biotechnology
dc.source.none.fl_str_mv reponame:LOCUS Repositório Institucional da UFV
instname:Universidade Federal de Viçosa (UFV)
instacron:UFV
instname_str Universidade Federal de Viçosa (UFV)
instacron_str UFV
institution UFV
reponame_str LOCUS Repositório Institucional da UFV
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