Molecular modification proposal: analysis of physicochemical, pharmacokinetic and toxicological parameters “in silico” of barbituric drugs

Detalhes bibliográficos
Autor(a) principal: Silva, Henrique Hidelbrando Mendes
Data de Publicação: 2022
Outros Autores: Alves, Matheus Henrique Pereira, Gonçalves , Renan José Sousa, Pereira, Nathalia de Aguiar, Affonso, Cristiano Ribeiro Gonçalves
Tipo de documento: Artigo
Idioma: por
Título da fonte: Research, Society and Development
Texto Completo: https://rsdjournal.org/index.php/rsd/article/view/35680
Resumo: This research aimed to propose molecular modifications and compare the characteristics of three barbiturate drugs and their analogues developed in silico through procedures and computational techniques using free programs. Barbiturates were the class chosen for this study, the selected drugs were: Phenobarbital, Pentobarbital and Amobarbital, being modified through simulations in silico. Three analogues were proposed, being analyzed and compared with the prototypes, using the free programs, Marvinsketch, where it was possible to evaluate parameters such as: Log P, hydrogen donors/acceptors and Van Der Walls Surface. In PreADMET, parameters such as BHE, HIA, Caco-2, MDCK, CYP-3A4, Ames Test, Carcinogenicity (Rats) and hERG Risk were obtained. Through the Osiris Property Explorer, the following parameters were evaluated: Mutagenicity, tumorigenicity, irritability, reproductive effect, solubility, molecular weight, polarity, druglikeness and Drug-Score. With the results obtained in PreADMET referring to BHE, the analogues BBT-F and BBT-A obtained better results, while the BBT-P had a worsening in the result. In relation to HIA, the values proved to be satisfactory, exhibiting good intestinal absorption. As for toxicity, the Ames test was verified, where all molecules were mutagenic. With the results obtained in Osiris, all the prototype drugs proved to be mutagenic, while in the analogues, only BBT-P showed mutagenicity. As for tumorigenicity, the prototype drugs remained at medium to high risk, while analogue drugs all showed non-tumorigenic results. Therefore, it is concluded that it was possible to make a preliminary, fast and low-cost analysis, helping in the research of new drugs through computational tools.
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spelling Molecular modification proposal: analysis of physicochemical, pharmacokinetic and toxicological parameters “in silico” of barbituric drugs Propuesta de modificación molecular: análisis de parámetros fisicoquímicos, farmacocinéticos y toxicológicos “in silico” de medicamentos barbitúricos Proposta de modificação molecular: análise de parâmetros físico-químicos, farmacocinéticos e toxicológicos “in sílico” de fármacos barbitúricosTécnicas computacionaisAnálogosMoléculaToxicidade.Técnicas computacionalesAnálogosMoléculaToxicidade.Computational techniquesAnaloguesMoleculeToxicity.This research aimed to propose molecular modifications and compare the characteristics of three barbiturate drugs and their analogues developed in silico through procedures and computational techniques using free programs. Barbiturates were the class chosen for this study, the selected drugs were: Phenobarbital, Pentobarbital and Amobarbital, being modified through simulations in silico. Three analogues were proposed, being analyzed and compared with the prototypes, using the free programs, Marvinsketch, where it was possible to evaluate parameters such as: Log P, hydrogen donors/acceptors and Van Der Walls Surface. In PreADMET, parameters such as BHE, HIA, Caco-2, MDCK, CYP-3A4, Ames Test, Carcinogenicity (Rats) and hERG Risk were obtained. Through the Osiris Property Explorer, the following parameters were evaluated: Mutagenicity, tumorigenicity, irritability, reproductive effect, solubility, molecular weight, polarity, druglikeness and Drug-Score. With the results obtained in PreADMET referring to BHE, the analogues BBT-F and BBT-A obtained better results, while the BBT-P had a worsening in the result. In relation to HIA, the values proved to be satisfactory, exhibiting good intestinal absorption. As for toxicity, the Ames test was verified, where all molecules were mutagenic. With the results obtained in Osiris, all the prototype drugs proved to be mutagenic, while in the analogues, only BBT-P showed mutagenicity. As for tumorigenicity, the prototype drugs remained at medium to high risk, while analogue drugs all showed non-tumorigenic results. Therefore, it is concluded that it was possible to make a preliminary, fast and low-cost analysis, helping in the research of new drugs through computational tools.Este trabajo tuvo como objetivo proponer modificaciones moleculares y comparar las características de tres fármacos barbitúricos y sus análogos desarrollos in silico a través de procedimientos y técnicas computacionales utilizando programas libres. Los barbitúricos fueron la clase escogida para este estudio, los fármacos seleccionados fueron: Fenobarbital, Pentobarbital y Amobarbital, siendo modificados en simulaciones in silico. Se propusieron tres análogos, siendo analizados y comparados con los prototipos, utilizando programas libres, Marvinsketch, evaluó parámetros como: Log P, donantes/aceptores de hidrógeno y Superficie de Van Der Walls. En PreADMET se obtuvieron parámetros como BHE, HIA, Caco-2, MDCK, CYP-3A4, Prueba de Ames, Carcinogenicidad (Ratas) y Riesgo hERG. Usando el Osiris Property Explorer, se evaluaron los siguientes parámetros: Mutagenicidad, tumorigenicidad, irritabilidad, reproducción, solubilidad, peso molecular, polaridad, druglikness y Drug-Score. Los resultados obtenidos en PreADMET referidos a BHE, los análogos BBT-F y BBT-A obtuvieron mejores resultados, mientras que BBT-P tuvo peor resultado. En relación a HIA, los valores fueron satisfactorios, con buena absorción intestinal. En la toxicidad, se verificó la prueba de Ames, donde todas las moléculas resultaron mutagénicas. Con los resultados obtenidos en Osiris, todos los fármacos prototipo demostraron ser mutagénicos, mientras que en los análogos, solo BBT-P mostró mutagenicidad. En cuanto a la tumorigenicidad, los fármacos prototipo permanecieron en un riesgo medio a alto, mientras que todos los fármacos análogos mostraron resultados no tumorigénicos. Por lo tanto, se concluye que fue posible realizar un análisis preliminar, rápido y de bajo costo, ayudando en la investigación de nuevos fármacos a través de herramientas computacionales.                                                                           Este trabalho teve como objetivo propor modificações moleculares e comparar as características de três fármacos barbitúricos e de seus análogos desenvolvidos in sílico através de procedimentos e técnicas computacionais utilizando programas gratuitos. Os barbitúricos foram a classe escolhida para esse estudo, os fármacos selecionados foram: Fenobarbital, Pentobarbital e Amobarbital, sendo modificados através de simulações in sílico. Foram propostos três análogos, sendo analisados e comparados com os protótipos, utilizando os programas gratuitos, Marvinsketch, onde foi possível avaliar parâmetros como: Log P, doadores/aceptores de hidrogênio e Superfície de Van Der Walls. No PreADMET se obteve parâmetros como BHE, HIA, Caco-2, MDCK, CYP-3A4, Teste Ames, Carcinogenicidade (Ratos) e Risco hERG. Através do Osiris Property Explorer, foi avaliado os seguintes parâmetros: Mutagenicidade, tumorigenicidade, irritabilidade, efeito reprodutivo, solubilidade, peso molecular, polaridade, druglikeness e Drug-Score. Com os resultados obtidos no PreADMET referentes a BHE, os análogos BBT-F e BBT-A obtiveram melhores resultados, enquanto o BBT-P houve piora no resultado. Em relação ao HIA, os valores se mostraram satisfatórios, apresentando uma boa absorção intestinal. Quanto a toxicidade, foi verificado o teste de Ames, onde todas as moléculas se apresentaram mutagênicas. Com os resultados obtidos no Osíris, todos os fármacos protótipos se mostraram mutagênicos, enquanto nos análogos, apenas o BBT-P apresentou mutagenicidade. Quanto a tumorigenicidade, os fármacos protótipos se mantiveram em risco médio a elevado, enquanto os fármacos análogos, todos apresentaram resultados não tumorigênicos. Portanto, conclui-se que foi possível fazer uma análise preliminar, rápida e de baixo custo, auxiliando na pesquisa de novos fármacos através de ferramentas computacionais.Research, Society and Development2022-10-14info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://rsdjournal.org/index.php/rsd/article/view/3568010.33448/rsd-v11i13.35680Research, Society and Development; Vol. 11 No. 13; e5291111335680Research, Society and Development; Vol. 11 Núm. 13; e5291111335680Research, Society and Development; v. 11 n. 13; e52911113356802525-3409reponame:Research, Society and Developmentinstname:Universidade Federal de Itajubá (UNIFEI)instacron:UNIFEIporhttps://rsdjournal.org/index.php/rsd/article/view/35680/29956Copyright (c) 2022 Henrique Hidelbrando Mendes Silva; Matheus Henrique Pereira Alves; Renan José Sousa Gonçalves ; Nathalia de Aguiar Pereira; Cristiano Ribeiro Gonçalves Affonsohttps://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccess Silva, Henrique Hidelbrando Mendes Alves, Matheus Henrique PereiraGonçalves , Renan José Sousa Pereira, Nathalia de Aguiar Affonso, Cristiano Ribeiro Gonçalves 2022-10-17T13:43:46Zoai:ojs.pkp.sfu.ca:article/35680Revistahttps://rsdjournal.org/index.php/rsd/indexPUBhttps://rsdjournal.org/index.php/rsd/oairsd.articles@gmail.com2525-34092525-3409opendoar:2024-01-17T09:50:30.608294Research, Society and Development - Universidade Federal de Itajubá (UNIFEI)false
dc.title.none.fl_str_mv Molecular modification proposal: analysis of physicochemical, pharmacokinetic and toxicological parameters “in silico” of barbituric drugs
Propuesta de modificación molecular: análisis de parámetros fisicoquímicos, farmacocinéticos y toxicológicos “in silico” de medicamentos barbitúricos
Proposta de modificação molecular: análise de parâmetros físico-químicos, farmacocinéticos e toxicológicos “in sílico” de fármacos barbitúricos
title Molecular modification proposal: analysis of physicochemical, pharmacokinetic and toxicological parameters “in silico” of barbituric drugs
spellingShingle Molecular modification proposal: analysis of physicochemical, pharmacokinetic and toxicological parameters “in silico” of barbituric drugs
Silva, Henrique Hidelbrando Mendes
Técnicas computacionais
Análogos
Molécula
Toxicidade.
Técnicas computacionales
Análogos
Molécula
Toxicidade.
Computational techniques
Analogues
Molecule
Toxicity.
title_short Molecular modification proposal: analysis of physicochemical, pharmacokinetic and toxicological parameters “in silico” of barbituric drugs
title_full Molecular modification proposal: analysis of physicochemical, pharmacokinetic and toxicological parameters “in silico” of barbituric drugs
title_fullStr Molecular modification proposal: analysis of physicochemical, pharmacokinetic and toxicological parameters “in silico” of barbituric drugs
title_full_unstemmed Molecular modification proposal: analysis of physicochemical, pharmacokinetic and toxicological parameters “in silico” of barbituric drugs
title_sort Molecular modification proposal: analysis of physicochemical, pharmacokinetic and toxicological parameters “in silico” of barbituric drugs
author Silva, Henrique Hidelbrando Mendes
author_facet Silva, Henrique Hidelbrando Mendes
Alves, Matheus Henrique Pereira
Gonçalves , Renan José Sousa
Pereira, Nathalia de Aguiar
Affonso, Cristiano Ribeiro Gonçalves
author_role author
author2 Alves, Matheus Henrique Pereira
Gonçalves , Renan José Sousa
Pereira, Nathalia de Aguiar
Affonso, Cristiano Ribeiro Gonçalves
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Silva, Henrique Hidelbrando Mendes
Alves, Matheus Henrique Pereira
Gonçalves , Renan José Sousa
Pereira, Nathalia de Aguiar
Affonso, Cristiano Ribeiro Gonçalves
dc.subject.por.fl_str_mv Técnicas computacionais
Análogos
Molécula
Toxicidade.
Técnicas computacionales
Análogos
Molécula
Toxicidade.
Computational techniques
Analogues
Molecule
Toxicity.
topic Técnicas computacionais
Análogos
Molécula
Toxicidade.
Técnicas computacionales
Análogos
Molécula
Toxicidade.
Computational techniques
Analogues
Molecule
Toxicity.
description This research aimed to propose molecular modifications and compare the characteristics of three barbiturate drugs and their analogues developed in silico through procedures and computational techniques using free programs. Barbiturates were the class chosen for this study, the selected drugs were: Phenobarbital, Pentobarbital and Amobarbital, being modified through simulations in silico. Three analogues were proposed, being analyzed and compared with the prototypes, using the free programs, Marvinsketch, where it was possible to evaluate parameters such as: Log P, hydrogen donors/acceptors and Van Der Walls Surface. In PreADMET, parameters such as BHE, HIA, Caco-2, MDCK, CYP-3A4, Ames Test, Carcinogenicity (Rats) and hERG Risk were obtained. Through the Osiris Property Explorer, the following parameters were evaluated: Mutagenicity, tumorigenicity, irritability, reproductive effect, solubility, molecular weight, polarity, druglikeness and Drug-Score. With the results obtained in PreADMET referring to BHE, the analogues BBT-F and BBT-A obtained better results, while the BBT-P had a worsening in the result. In relation to HIA, the values proved to be satisfactory, exhibiting good intestinal absorption. As for toxicity, the Ames test was verified, where all molecules were mutagenic. With the results obtained in Osiris, all the prototype drugs proved to be mutagenic, while in the analogues, only BBT-P showed mutagenicity. As for tumorigenicity, the prototype drugs remained at medium to high risk, while analogue drugs all showed non-tumorigenic results. Therefore, it is concluded that it was possible to make a preliminary, fast and low-cost analysis, helping in the research of new drugs through computational tools.
publishDate 2022
dc.date.none.fl_str_mv 2022-10-14
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://rsdjournal.org/index.php/rsd/article/view/35680
10.33448/rsd-v11i13.35680
url https://rsdjournal.org/index.php/rsd/article/view/35680
identifier_str_mv 10.33448/rsd-v11i13.35680
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv https://rsdjournal.org/index.php/rsd/article/view/35680/29956
dc.rights.driver.fl_str_mv https://creativecommons.org/licenses/by/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Research, Society and Development
publisher.none.fl_str_mv Research, Society and Development
dc.source.none.fl_str_mv Research, Society and Development; Vol. 11 No. 13; e5291111335680
Research, Society and Development; Vol. 11 Núm. 13; e5291111335680
Research, Society and Development; v. 11 n. 13; e5291111335680
2525-3409
reponame:Research, Society and Development
instname:Universidade Federal de Itajubá (UNIFEI)
instacron:UNIFEI
instname_str Universidade Federal de Itajubá (UNIFEI)
instacron_str UNIFEI
institution UNIFEI
reponame_str Research, Society and Development
collection Research, Society and Development
repository.name.fl_str_mv Research, Society and Development - Universidade Federal de Itajubá (UNIFEI)
repository.mail.fl_str_mv rsd.articles@gmail.com
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