Sequence diversity and catalytic properties of phytases

Detalhes bibliográficos
Autor(a) principal: Pires , Elizabeth Bárbara Epalanga
Data de Publicação: 2022
Outros Autores: Polêto, Marcelo Depólo, Vidigal, Pedro Marcus Pereira, Aragão , Matheus Ítalo Bonfim, Barros , Tarley Araújo, Salgado, Rafael Locatelli, Guimarães , Valéria Monteze, Eller, Monique Renon
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Research, Society and Development
Texto Completo: https://rsdjournal.org/index.php/rsd/article/view/32765
Resumo: Phytic acid is an antinutritional factor in cereal feeds, and the use of phytases increases the bioavailability of nutrients bound to this molecule. However, the application of these enzymes depends on their thermal stability and activity at acidic pH. Therefore, in this study we created a database composed of 59 phytase sequences and analyzed the interactions that stabilize their structures in order to understand whether they contribute to the biochemical properties observed. The sequences were aligned and grouped at 30 % similarity, generating 5 clusters, which highlights the high variability among them. A comparative structural analysis of the cluster 3 phytases revealed conserved catalytic domains, as well as eight cysteine residues along the primary sequence, forming disulfide bonds for stabilizing the three-dimensional structure. However, the number of Van der Waals, ionic, and hydrogen interactions, and disulfide bonds was not determinant for the biochemical characteristics presented by these enzymes. The phytase KM873028, from cluster 3, was selected for characterization studies, but its expression in Pichia pastoris generated a protein with properties distinct from those derived from the same sequence expressed in a prokaryotic system. It is likely that the differences observed are associated with the location of the interactions in the structures, non-conserved amino acid residues found around the catalytic site, and post-translational modifications inherent to the expression systems. These possibilities highlight the relevance of strategic choices related to enzyme expression aiming at its production and industrial feasibility.
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spelling Sequence diversity and catalytic properties of phytasesDiversidad en secuencias y propiedades catalíticas en fitasasDiversidade de sequências e propriedades catalíticas de fitasesConservación de secuencias enzimáticasÁcido fíticoAlimentación animalEstabilidad enzimáticaEstructura enzimática.Conservação de sequências de enzimasÁcido fíticoAlimentação animalEstabilidade de enzimasEstrutura de enzimas.Enzyme sequence conservationPhytic acidAnimal feedEnzyme stabilityEnzyme structure. Phytic acid is an antinutritional factor in cereal feeds, and the use of phytases increases the bioavailability of nutrients bound to this molecule. However, the application of these enzymes depends on their thermal stability and activity at acidic pH. Therefore, in this study we created a database composed of 59 phytase sequences and analyzed the interactions that stabilize their structures in order to understand whether they contribute to the biochemical properties observed. The sequences were aligned and grouped at 30 % similarity, generating 5 clusters, which highlights the high variability among them. A comparative structural analysis of the cluster 3 phytases revealed conserved catalytic domains, as well as eight cysteine residues along the primary sequence, forming disulfide bonds for stabilizing the three-dimensional structure. However, the number of Van der Waals, ionic, and hydrogen interactions, and disulfide bonds was not determinant for the biochemical characteristics presented by these enzymes. The phytase KM873028, from cluster 3, was selected for characterization studies, but its expression in Pichia pastoris generated a protein with properties distinct from those derived from the same sequence expressed in a prokaryotic system. It is likely that the differences observed are associated with the location of the interactions in the structures, non-conserved amino acid residues found around the catalytic site, and post-translational modifications inherent to the expression systems. These possibilities highlight the relevance of strategic choices related to enzyme expression aiming at its production and industrial feasibility.El ácido fítico es un factor antinutricional en los cereales que componen las raciones, y el uso de fitasas aumenta la biodisponibilidad de los nutrientes en esta molécula. La aplicación de estas enzimas depende de su estabilidad térmica y actividad a pH ácido. Por lo tanto, creamos una base de datos con 59 secuencias de fitasa y analizamos las interacciones que estabilizan sus estructuras para comprender si contribuyen a las propiedades bioquímicas observadas. Las secuencias fueron agrupadas al 30% de similitud, generando 5 clusters, lo que demuestra la alta variabilidad. Un análisis estructural comparativo de las fitasas del grupo 3 reveló dominios catalíticos conservados, así como ocho residuos de cisteína a lo largo de la secuencia primaria, formando enlaces disulfuro para estabilizar la estrutura. Sin embargo, el número de interacciones de hidrógeno, Van der Waals, iónico y disulfuro no es determinante para las características bioquímicas que presentan estas enzimas. La fitasa KM873028, del grupo 3, fue seleccionada para estudios de caracterización, pero su expresión en Pichia pastoris generó una proteína con propiedades diferentes a las derivadas de la misma secuencia expresada en un sistema procariótico. Es probable que las diferencias observadas estén asociadas con la ubicación de las interacciones en las estructuras, los residuos de aminoácidos no conservados que se encuentran alrededor del sitio catalítico, y las modificaciones postraduccionales inherentes a los sistemas de expresión elegidos. Estas posibilidades muestran la relevancia de elecciones estratégicas relacionadas con la expresión de la enzima, con el objetivo de su producción y viabilidad industrial.O ácido fítico é um fator antinutricional de cereais que compõem rações, e o uso de fitases aumenta a biodisponibilidade de nutrientes ligados a esta molécula. No entanto, a aplicação dessas enzimas depende de sua estabilidade térmica e atividade em pH ácido. Por isso, nesse estudo criamos um banco de dados com 59 sequências de fitases e analisamos as interações que estabilizam suas estruturas a fim de compreender se estas contribuem para as propriedades bioquímicas observadas. As sequências foram alinhadas e agrupadas a 30% de similaridade, gerando 5 clusters, o que evidencia a alta variabilidade entre elas. Uma análise comparativa estrutural das fitases do cluster 3 revelou domínios catalíticos conservados, assim como oito resíduos de cisteína ao longo da sequência primária, formando pontes dissulfeto para estabilização da estrutura tridimensional proteica. Entretanto, o número de interações de hidrogênio, Van der Waals e iônicas e pontes dissulfeto não foi determinante para as características bioquímicas apresentadas por essas enzimas. A fitase KM873028, do cluster 3, foi selecionada para estudos de caracterização, mas a sua expressão em Pichia pastoris gerou uma proteína com propriedades distintas daquelas derivadas da mesma sequência expressa em sistema procarioto. É provável que as diferenças observadas estejam associadas à localização das interações nas estruturas, resíduos de aminoácidos não conservados encontrados ao redor do sítio catalítico, além de modificações pós-traducionais inerentes aos sistemas de expressão escolhidos. Essas possibilidades evidenciam a relevância das escolhas estratégicas relacionadas à expressão da enzima visando sua produção e viabilização industrial.Research, Society and Development2022-08-06info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://rsdjournal.org/index.php/rsd/article/view/3276510.33448/rsd-v11i10.32765Research, Society and Development; Vol. 11 No. 10; e427111032765Research, Society and Development; Vol. 11 Núm. 10; e427111032765Research, Society and Development; v. 11 n. 10; e4271110327652525-3409reponame:Research, Society and Developmentinstname:Universidade Federal de Itajubá (UNIFEI)instacron:UNIFEIenghttps://rsdjournal.org/index.php/rsd/article/view/32765/27940Copyright (c) 2022 Elizabeth Bárbara Epalanga Pires ; Marcelo Depólo Polêto; Pedro Marcus Pereira Vidigal; Matheus Ítalo Bonfim Aragão ; Tarley Araújo Barros ; Rafael Locatelli Salgado; Valéria Monteze Guimarães ; Monique Renon Ellerhttps://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessPires , Elizabeth Bárbara EpalangaPolêto, Marcelo DepóloVidigal, Pedro Marcus PereiraAragão , Matheus Ítalo BonfimBarros , Tarley AraújoSalgado, Rafael LocatelliGuimarães , Valéria MontezeEller, Monique Renon2022-08-12T22:23:03Zoai:ojs.pkp.sfu.ca:article/32765Revistahttps://rsdjournal.org/index.php/rsd/indexPUBhttps://rsdjournal.org/index.php/rsd/oairsd.articles@gmail.com2525-34092525-3409opendoar:2024-01-17T09:48:38.951830Research, Society and Development - Universidade Federal de Itajubá (UNIFEI)false
dc.title.none.fl_str_mv Sequence diversity and catalytic properties of phytases
Diversidad en secuencias y propiedades catalíticas en fitasas
Diversidade de sequências e propriedades catalíticas de fitases
title Sequence diversity and catalytic properties of phytases
spellingShingle Sequence diversity and catalytic properties of phytases
Pires , Elizabeth Bárbara Epalanga
Conservación de secuencias enzimáticas
Ácido fítico
Alimentación animal
Estabilidad enzimática
Estructura enzimática.
Conservação de sequências de enzimas
Ácido fítico
Alimentação animal
Estabilidade de enzimas
Estrutura de enzimas.
Enzyme sequence conservation
Phytic acid
Animal feed
Enzyme stability
Enzyme structure.
title_short Sequence diversity and catalytic properties of phytases
title_full Sequence diversity and catalytic properties of phytases
title_fullStr Sequence diversity and catalytic properties of phytases
title_full_unstemmed Sequence diversity and catalytic properties of phytases
title_sort Sequence diversity and catalytic properties of phytases
author Pires , Elizabeth Bárbara Epalanga
author_facet Pires , Elizabeth Bárbara Epalanga
Polêto, Marcelo Depólo
Vidigal, Pedro Marcus Pereira
Aragão , Matheus Ítalo Bonfim
Barros , Tarley Araújo
Salgado, Rafael Locatelli
Guimarães , Valéria Monteze
Eller, Monique Renon
author_role author
author2 Polêto, Marcelo Depólo
Vidigal, Pedro Marcus Pereira
Aragão , Matheus Ítalo Bonfim
Barros , Tarley Araújo
Salgado, Rafael Locatelli
Guimarães , Valéria Monteze
Eller, Monique Renon
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Pires , Elizabeth Bárbara Epalanga
Polêto, Marcelo Depólo
Vidigal, Pedro Marcus Pereira
Aragão , Matheus Ítalo Bonfim
Barros , Tarley Araújo
Salgado, Rafael Locatelli
Guimarães , Valéria Monteze
Eller, Monique Renon
dc.subject.por.fl_str_mv Conservación de secuencias enzimáticas
Ácido fítico
Alimentación animal
Estabilidad enzimática
Estructura enzimática.
Conservação de sequências de enzimas
Ácido fítico
Alimentação animal
Estabilidade de enzimas
Estrutura de enzimas.
Enzyme sequence conservation
Phytic acid
Animal feed
Enzyme stability
Enzyme structure.
topic Conservación de secuencias enzimáticas
Ácido fítico
Alimentación animal
Estabilidad enzimática
Estructura enzimática.
Conservação de sequências de enzimas
Ácido fítico
Alimentação animal
Estabilidade de enzimas
Estrutura de enzimas.
Enzyme sequence conservation
Phytic acid
Animal feed
Enzyme stability
Enzyme structure.
description Phytic acid is an antinutritional factor in cereal feeds, and the use of phytases increases the bioavailability of nutrients bound to this molecule. However, the application of these enzymes depends on their thermal stability and activity at acidic pH. Therefore, in this study we created a database composed of 59 phytase sequences and analyzed the interactions that stabilize their structures in order to understand whether they contribute to the biochemical properties observed. The sequences were aligned and grouped at 30 % similarity, generating 5 clusters, which highlights the high variability among them. A comparative structural analysis of the cluster 3 phytases revealed conserved catalytic domains, as well as eight cysteine residues along the primary sequence, forming disulfide bonds for stabilizing the three-dimensional structure. However, the number of Van der Waals, ionic, and hydrogen interactions, and disulfide bonds was not determinant for the biochemical characteristics presented by these enzymes. The phytase KM873028, from cluster 3, was selected for characterization studies, but its expression in Pichia pastoris generated a protein with properties distinct from those derived from the same sequence expressed in a prokaryotic system. It is likely that the differences observed are associated with the location of the interactions in the structures, non-conserved amino acid residues found around the catalytic site, and post-translational modifications inherent to the expression systems. These possibilities highlight the relevance of strategic choices related to enzyme expression aiming at its production and industrial feasibility.
publishDate 2022
dc.date.none.fl_str_mv 2022-08-06
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://rsdjournal.org/index.php/rsd/article/view/32765
10.33448/rsd-v11i10.32765
url https://rsdjournal.org/index.php/rsd/article/view/32765
identifier_str_mv 10.33448/rsd-v11i10.32765
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://rsdjournal.org/index.php/rsd/article/view/32765/27940
dc.rights.driver.fl_str_mv https://creativecommons.org/licenses/by/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Research, Society and Development
publisher.none.fl_str_mv Research, Society and Development
dc.source.none.fl_str_mv Research, Society and Development; Vol. 11 No. 10; e427111032765
Research, Society and Development; Vol. 11 Núm. 10; e427111032765
Research, Society and Development; v. 11 n. 10; e427111032765
2525-3409
reponame:Research, Society and Development
instname:Universidade Federal de Itajubá (UNIFEI)
instacron:UNIFEI
instname_str Universidade Federal de Itajubá (UNIFEI)
instacron_str UNIFEI
institution UNIFEI
reponame_str Research, Society and Development
collection Research, Society and Development
repository.name.fl_str_mv Research, Society and Development - Universidade Federal de Itajubá (UNIFEI)
repository.mail.fl_str_mv rsd.articles@gmail.com
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