A Model Based on Genetic Algorithm for Colorectal Cancer Diagnosis

Detalhes bibliográficos
Autor(a) principal: Taino, Daniela F. [UNESP]
Data de Publicação: 2019
Outros Autores: Ribeiro, Matheus G. [UNESP], Roberto, Guilherme Freire, Zafalon, Geraldo F. D. [UNESP], do Nascimento, Marcelo Zanchetta, Tosta, Thaína A., Martins, Alessandro S., Neves, Leandro A. [UNESP]
Tipo de documento: Artigo de conferência
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1007/978-3-030-33904-3_47
http://hdl.handle.net/11449/198202
Resumo: In this paper we present a method based on genetic algorithm capable of analyzing a significant number of features obtained from fractal techniques, Haralick texture features and curvelet coefficients, as well as several selection methods and classifiers for the study and pattern recognition of colorectal cancer. The chromosomal structure was represented by four genes in order to define an individual. The steps for evaluation and selection of individuals as well as crossover and mutation were directed to provide distinctions of colorectal cancer groups with the highest accuracy rate and the smallest number of features. The tests were performed with features from histological images H&E, different values of population and iterations numbers and with the k-fold cross-validation method. The best result was provided by a population of 500 individuals and 50 iterations applying relief, random forest and 29 features (obtained mainly from the combination of percolation measures and curvelet subimages). This solution was capable of distinguishing the groups with an accuracy rate of 90.82% and an AUC equal to 0.967.
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spelling A Model Based on Genetic Algorithm for Colorectal Cancer DiagnosisColorectal cancerFeature classificationFeature selectionGenetic algorithmIn this paper we present a method based on genetic algorithm capable of analyzing a significant number of features obtained from fractal techniques, Haralick texture features and curvelet coefficients, as well as several selection methods and classifiers for the study and pattern recognition of colorectal cancer. The chromosomal structure was represented by four genes in order to define an individual. The steps for evaluation and selection of individuals as well as crossover and mutation were directed to provide distinctions of colorectal cancer groups with the highest accuracy rate and the smallest number of features. The tests were performed with features from histological images H&E, different values of population and iterations numbers and with the k-fold cross-validation method. The best result was provided by a population of 500 individuals and 50 iterations applying relief, random forest and 29 features (obtained mainly from the combination of percolation measures and curvelet subimages). This solution was capable of distinguishing the groups with an accuracy rate of 90.82% and an AUC equal to 0.967.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG)Department of Computer Science and Statistics São Paulo State University (UNESP), R. Cristovão Colombo, 2265Faculty of Computation (FACOM) Federal University of Uberlândia (UFU), Av. João Naves de Ávila, 2121Center of Mathematics Computing and Cognition Federal University of ABC (UFABC), Av. dos Estados, 5001Federal Institute of Triângulo Mineiro (IFTM), R. Belarmino Vilela Junqueira S/NDepartment of Computer Science and Statistics São Paulo State University (UNESP), R. Cristovão Colombo, 2265CNPq: #304848/2018-2CNPq: #313365/2018-0CNPq: #427114/2016-0CNPq: #430965/2018-4FAPEMIG: #APQ-00578-18Universidade Estadual Paulista (Unesp)Universidade Federal de Uberlândia (UFU)Universidade Federal do ABC (UFABC)Federal Institute of Triângulo Mineiro (IFTM)Taino, Daniela F. [UNESP]Ribeiro, Matheus G. [UNESP]Roberto, Guilherme FreireZafalon, Geraldo F. D. [UNESP]do Nascimento, Marcelo ZanchettaTosta, Thaína A.Martins, Alessandro S.Neves, Leandro A. [UNESP]2020-12-12T01:06:21Z2020-12-12T01:06:21Z2019-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/conferenceObject504-513http://dx.doi.org/10.1007/978-3-030-33904-3_47Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), v. 11896 LNCS, p. 504-513.1611-33490302-9743http://hdl.handle.net/11449/19820210.1007/978-3-030-33904-3_472-s2.0-85075660821Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)info:eu-repo/semantics/openAccess2021-10-23T09:55:31Zoai:repositorio.unesp.br:11449/198202Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T09:55:31Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv A Model Based on Genetic Algorithm for Colorectal Cancer Diagnosis
title A Model Based on Genetic Algorithm for Colorectal Cancer Diagnosis
spellingShingle A Model Based on Genetic Algorithm for Colorectal Cancer Diagnosis
Taino, Daniela F. [UNESP]
Colorectal cancer
Feature classification
Feature selection
Genetic algorithm
title_short A Model Based on Genetic Algorithm for Colorectal Cancer Diagnosis
title_full A Model Based on Genetic Algorithm for Colorectal Cancer Diagnosis
title_fullStr A Model Based on Genetic Algorithm for Colorectal Cancer Diagnosis
title_full_unstemmed A Model Based on Genetic Algorithm for Colorectal Cancer Diagnosis
title_sort A Model Based on Genetic Algorithm for Colorectal Cancer Diagnosis
author Taino, Daniela F. [UNESP]
author_facet Taino, Daniela F. [UNESP]
Ribeiro, Matheus G. [UNESP]
Roberto, Guilherme Freire
Zafalon, Geraldo F. D. [UNESP]
do Nascimento, Marcelo Zanchetta
Tosta, Thaína A.
Martins, Alessandro S.
Neves, Leandro A. [UNESP]
author_role author
author2 Ribeiro, Matheus G. [UNESP]
Roberto, Guilherme Freire
Zafalon, Geraldo F. D. [UNESP]
do Nascimento, Marcelo Zanchetta
Tosta, Thaína A.
Martins, Alessandro S.
Neves, Leandro A. [UNESP]
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Universidade Federal de Uberlândia (UFU)
Universidade Federal do ABC (UFABC)
Federal Institute of Triângulo Mineiro (IFTM)
dc.contributor.author.fl_str_mv Taino, Daniela F. [UNESP]
Ribeiro, Matheus G. [UNESP]
Roberto, Guilherme Freire
Zafalon, Geraldo F. D. [UNESP]
do Nascimento, Marcelo Zanchetta
Tosta, Thaína A.
Martins, Alessandro S.
Neves, Leandro A. [UNESP]
dc.subject.por.fl_str_mv Colorectal cancer
Feature classification
Feature selection
Genetic algorithm
topic Colorectal cancer
Feature classification
Feature selection
Genetic algorithm
description In this paper we present a method based on genetic algorithm capable of analyzing a significant number of features obtained from fractal techniques, Haralick texture features and curvelet coefficients, as well as several selection methods and classifiers for the study and pattern recognition of colorectal cancer. The chromosomal structure was represented by four genes in order to define an individual. The steps for evaluation and selection of individuals as well as crossover and mutation were directed to provide distinctions of colorectal cancer groups with the highest accuracy rate and the smallest number of features. The tests were performed with features from histological images H&E, different values of population and iterations numbers and with the k-fold cross-validation method. The best result was provided by a population of 500 individuals and 50 iterations applying relief, random forest and 29 features (obtained mainly from the combination of percolation measures and curvelet subimages). This solution was capable of distinguishing the groups with an accuracy rate of 90.82% and an AUC equal to 0.967.
publishDate 2019
dc.date.none.fl_str_mv 2019-01-01
2020-12-12T01:06:21Z
2020-12-12T01:06:21Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/conferenceObject
format conferenceObject
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1007/978-3-030-33904-3_47
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), v. 11896 LNCS, p. 504-513.
1611-3349
0302-9743
http://hdl.handle.net/11449/198202
10.1007/978-3-030-33904-3_47
2-s2.0-85075660821
url http://dx.doi.org/10.1007/978-3-030-33904-3_47
http://hdl.handle.net/11449/198202
identifier_str_mv Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), v. 11896 LNCS, p. 504-513.
1611-3349
0302-9743
10.1007/978-3-030-33904-3_47
2-s2.0-85075660821
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 504-513
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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