Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms

Detalhes bibliográficos
Autor(a) principal: de Campos, Bruna K.
Data de Publicação: 2020
Outros Autores: Galazzi, Rodrigo M., dos Santos, Bruna M. [UNESP], Balbuena, Tiago S. [UNESP], dos Santos, Fábio N., Mokochinski, João B., Eberlin, Marcos N., Arruda, Marco A.Z.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.ecoenv.2020.110918
http://hdl.handle.net/11449/200712
Resumo: This work evaluates different generations of transgenic (cp4-EPSPS gene) and non-transgenic soybean plants through proteomics and metabolomics. For proteomics purpose, 24 differentially abundant protein spots were found through 2-D DIGE, being 4 belonging to transgenic plants. From this total, 19 were successfully identified, storage proteins as predominant class. Some identified proteins are involved in growing and cell division, and stress response, such as LEA and dehydrin. For metabolomics, 17 compounds were putatively annotated, mainly belonging to the secondary metabolism, such as flavonoids. From these analyzes, all generations and varieties of the soybean are prone to be differentiate by PLS-DA. According to our results, transgenic plants appear to be more stable than non-transgenic ones. In addition, the omics-based approaches allowed access some relations between those differential spot proteins and metabolites, mainly those storage proteins and flavonoid.
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spelling Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platformsGenerational effectMass spectrometryMetaboliteProteinSoybeanTransgenicThis work evaluates different generations of transgenic (cp4-EPSPS gene) and non-transgenic soybean plants through proteomics and metabolomics. For proteomics purpose, 24 differentially abundant protein spots were found through 2-D DIGE, being 4 belonging to transgenic plants. From this total, 19 were successfully identified, storage proteins as predominant class. Some identified proteins are involved in growing and cell division, and stress response, such as LEA and dehydrin. For metabolomics, 17 compounds were putatively annotated, mainly belonging to the secondary metabolism, such as flavonoids. From these analyzes, all generations and varieties of the soybean are prone to be differentiate by PLS-DA. According to our results, transgenic plants appear to be more stable than non-transgenic ones. In addition, the omics-based approaches allowed access some relations between those differential spot proteins and metabolites, mainly those storage proteins and flavonoid.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Spectrometry Sample Preparation and Mechanization Group – GEPAM Institute of Chemistry University of Campinas – UNICAMP, P.O. Box 6154National Institute of Science and Technology for Bioanalytics Institute of Chemistry University of Campinas – UNICAMP, P.O. Box 6154Department of Technology School of Agricultural and Veterinary Studies State University “Júlio de Mesquita Filho”- UNESP - JaboticabalDepartment of Organic Chemistry Institute of Chemistry University of Campinas – UNICAMP, P.O. Box 6154London Institute of Medical Sciences Faculty of Medicine Imperial College London UK Research and InnovationDepartment of Technology School of Agricultural and Veterinary Studies State University “Júlio de Mesquita Filho”- UNESP - JaboticabalFAPESP: 2013/15646-3FAPESP: 2013/17514-7FAPESP: 2016/07384-7FAPESP: 2018/25207-0CNPq: 401170/2016-0Universidade Estadual de Campinas (UNICAMP)Universidade Estadual Paulista (Unesp)UK Research and Innovationde Campos, Bruna K.Galazzi, Rodrigo M.dos Santos, Bruna M. [UNESP]Balbuena, Tiago S. [UNESP]dos Santos, Fábio N.Mokochinski, João B.Eberlin, Marcos N.Arruda, Marco A.Z.2020-12-12T02:14:01Z2020-12-12T02:14:01Z2020-10-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.ecoenv.2020.110918Ecotoxicology and Environmental Safety, v. 202.1090-24140147-6513http://hdl.handle.net/11449/20071210.1016/j.ecoenv.2020.1109182-s2.0-85087504012Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengEcotoxicology and Environmental Safetyinfo:eu-repo/semantics/openAccess2021-10-23T14:47:58Zoai:repositorio.unesp.br:11449/200712Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T14:47:58Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms
title Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms
spellingShingle Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms
de Campos, Bruna K.
Generational effect
Mass spectrometry
Metabolite
Protein
Soybean
Transgenic
title_short Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms
title_full Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms
title_fullStr Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms
title_full_unstemmed Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms
title_sort Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms
author de Campos, Bruna K.
author_facet de Campos, Bruna K.
Galazzi, Rodrigo M.
dos Santos, Bruna M. [UNESP]
Balbuena, Tiago S. [UNESP]
dos Santos, Fábio N.
Mokochinski, João B.
Eberlin, Marcos N.
Arruda, Marco A.Z.
author_role author
author2 Galazzi, Rodrigo M.
dos Santos, Bruna M. [UNESP]
Balbuena, Tiago S. [UNESP]
dos Santos, Fábio N.
Mokochinski, João B.
Eberlin, Marcos N.
Arruda, Marco A.Z.
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual de Campinas (UNICAMP)
Universidade Estadual Paulista (Unesp)
UK Research and Innovation
dc.contributor.author.fl_str_mv de Campos, Bruna K.
Galazzi, Rodrigo M.
dos Santos, Bruna M. [UNESP]
Balbuena, Tiago S. [UNESP]
dos Santos, Fábio N.
Mokochinski, João B.
Eberlin, Marcos N.
Arruda, Marco A.Z.
dc.subject.por.fl_str_mv Generational effect
Mass spectrometry
Metabolite
Protein
Soybean
Transgenic
topic Generational effect
Mass spectrometry
Metabolite
Protein
Soybean
Transgenic
description This work evaluates different generations of transgenic (cp4-EPSPS gene) and non-transgenic soybean plants through proteomics and metabolomics. For proteomics purpose, 24 differentially abundant protein spots were found through 2-D DIGE, being 4 belonging to transgenic plants. From this total, 19 were successfully identified, storage proteins as predominant class. Some identified proteins are involved in growing and cell division, and stress response, such as LEA and dehydrin. For metabolomics, 17 compounds were putatively annotated, mainly belonging to the secondary metabolism, such as flavonoids. From these analyzes, all generations and varieties of the soybean are prone to be differentiate by PLS-DA. According to our results, transgenic plants appear to be more stable than non-transgenic ones. In addition, the omics-based approaches allowed access some relations between those differential spot proteins and metabolites, mainly those storage proteins and flavonoid.
publishDate 2020
dc.date.none.fl_str_mv 2020-12-12T02:14:01Z
2020-12-12T02:14:01Z
2020-10-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.ecoenv.2020.110918
Ecotoxicology and Environmental Safety, v. 202.
1090-2414
0147-6513
http://hdl.handle.net/11449/200712
10.1016/j.ecoenv.2020.110918
2-s2.0-85087504012
url http://dx.doi.org/10.1016/j.ecoenv.2020.110918
http://hdl.handle.net/11449/200712
identifier_str_mv Ecotoxicology and Environmental Safety, v. 202.
1090-2414
0147-6513
10.1016/j.ecoenv.2020.110918
2-s2.0-85087504012
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Ecotoxicology and Environmental Safety
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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