Variants in the Chromosomal Region of the Myostatin Gene and Their Association With Lines, Performance, and Body Measurements of Quarter Horses

Detalhes bibliográficos
Autor(a) principal: de Matteis, Rafael [UNESP]
Data de Publicação: 2018
Outros Autores: Pereira, Guilherme L. [UNESP], Casarotto, Letícia T. [UNESP], Tavernaro, Anna Júlia S. [UNESP], Silva, Josineudson Augusto II. V. [UNESP], Chardulo, Luís Artur L. [UNESP], Curi, Rogério A. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.jevs.2018.09.007
http://hdl.handle.net/11449/189819
Resumo: The objectives of this study were to evaluate differences between the racing and cutting lines of Quarter Horses in the allele frequencies of polymorphisms identified in the chromosomal region of the myostatin gene (MSTN, ECA18) and to analyze the association of polymorphisms in this chromosomal region with the estimated breeding values (EBVs) for racing performance, given by the maximum speed index, height at withers (HW), thoracic perimeter (TP), and body length (BL) in the racing line, and with EBVs for HW, TP, and BL in the cutting line. Genomic, phenotypic, and pedigree data from 420 horses of both sexes, registered in the Brazilian Association of Quarter Horse breeders, were used (352 of racing line and 68 of cutting line). In the genome region studied (MSTN ± 2 Mb), 46 SNPs and one SINE (ERE1) shared among the cutting and racing lines were identified, and the allele frequencies of 32 SNPs and the one SINE differed significantly between the two lines (P <.05). Furthermore, the part of this region closest to the MSTN (±1 Mb) was found to be less polymorphic in the racing line. Regarding phenotype-associated polymorphisms (unadjusted P <.05), those related to HW in the racing line are highlighted because of their large number and extensive linkage disequilibrium. In addition, these markers exhibited significantly higher frequencies of the favorable allele compared to the cutting line.
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spelling Variants in the Chromosomal Region of the Myostatin Gene and Their Association With Lines, Performance, and Body Measurements of Quarter HorsesERE1HorseMolecular markersQTLSNPSpeedThe objectives of this study were to evaluate differences between the racing and cutting lines of Quarter Horses in the allele frequencies of polymorphisms identified in the chromosomal region of the myostatin gene (MSTN, ECA18) and to analyze the association of polymorphisms in this chromosomal region with the estimated breeding values (EBVs) for racing performance, given by the maximum speed index, height at withers (HW), thoracic perimeter (TP), and body length (BL) in the racing line, and with EBVs for HW, TP, and BL in the cutting line. Genomic, phenotypic, and pedigree data from 420 horses of both sexes, registered in the Brazilian Association of Quarter Horse breeders, were used (352 of racing line and 68 of cutting line). In the genome region studied (MSTN ± 2 Mb), 46 SNPs and one SINE (ERE1) shared among the cutting and racing lines were identified, and the allele frequencies of 32 SNPs and the one SINE differed significantly between the two lines (P <.05). Furthermore, the part of this region closest to the MSTN (±1 Mb) was found to be less polymorphic in the racing line. Regarding phenotype-associated polymorphisms (unadjusted P <.05), those related to HW in the racing line are highlighted because of their large number and extensive linkage disequilibrium. In addition, these markers exhibited significantly higher frequencies of the favorable allele compared to the cutting line.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Department of Animal Science College of Agriculture and Veterinary Science São Paulo State University (UNESP)Department of Animal Breeding and Nutrition College of Veterinary and Animal Science São Paulo State University (UNESP)Department of Animal Science College of Agriculture and Veterinary Science São Paulo State University (UNESP)Department of Animal Breeding and Nutrition College of Veterinary and Animal Science São Paulo State University (UNESP)FAPESP: 2014/20207-1Universidade Estadual Paulista (Unesp)de Matteis, Rafael [UNESP]Pereira, Guilherme L. [UNESP]Casarotto, Letícia T. [UNESP]Tavernaro, Anna Júlia S. [UNESP]Silva, Josineudson Augusto II. V. [UNESP]Chardulo, Luís Artur L. [UNESP]Curi, Rogério A. [UNESP]2019-10-06T16:53:15Z2019-10-06T16:53:15Z2018-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article75-83http://dx.doi.org/10.1016/j.jevs.2018.09.007Journal of Equine Veterinary Science, v. 71, p. 75-83.0737-0806http://hdl.handle.net/11449/18981910.1016/j.jevs.2018.09.0072-s2.0-8505510951535147134139191260000-0001-6289-0406Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Equine Veterinary Scienceinfo:eu-repo/semantics/openAccess2021-10-23T14:48:10Zoai:repositorio.unesp.br:11449/189819Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T14:48:10Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Variants in the Chromosomal Region of the Myostatin Gene and Their Association With Lines, Performance, and Body Measurements of Quarter Horses
title Variants in the Chromosomal Region of the Myostatin Gene and Their Association With Lines, Performance, and Body Measurements of Quarter Horses
spellingShingle Variants in the Chromosomal Region of the Myostatin Gene and Their Association With Lines, Performance, and Body Measurements of Quarter Horses
de Matteis, Rafael [UNESP]
ERE1
Horse
Molecular markers
QTL
SNP
Speed
title_short Variants in the Chromosomal Region of the Myostatin Gene and Their Association With Lines, Performance, and Body Measurements of Quarter Horses
title_full Variants in the Chromosomal Region of the Myostatin Gene and Their Association With Lines, Performance, and Body Measurements of Quarter Horses
title_fullStr Variants in the Chromosomal Region of the Myostatin Gene and Their Association With Lines, Performance, and Body Measurements of Quarter Horses
title_full_unstemmed Variants in the Chromosomal Region of the Myostatin Gene and Their Association With Lines, Performance, and Body Measurements of Quarter Horses
title_sort Variants in the Chromosomal Region of the Myostatin Gene and Their Association With Lines, Performance, and Body Measurements of Quarter Horses
author de Matteis, Rafael [UNESP]
author_facet de Matteis, Rafael [UNESP]
Pereira, Guilherme L. [UNESP]
Casarotto, Letícia T. [UNESP]
Tavernaro, Anna Júlia S. [UNESP]
Silva, Josineudson Augusto II. V. [UNESP]
Chardulo, Luís Artur L. [UNESP]
Curi, Rogério A. [UNESP]
author_role author
author2 Pereira, Guilherme L. [UNESP]
Casarotto, Letícia T. [UNESP]
Tavernaro, Anna Júlia S. [UNESP]
Silva, Josineudson Augusto II. V. [UNESP]
Chardulo, Luís Artur L. [UNESP]
Curi, Rogério A. [UNESP]
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv de Matteis, Rafael [UNESP]
Pereira, Guilherme L. [UNESP]
Casarotto, Letícia T. [UNESP]
Tavernaro, Anna Júlia S. [UNESP]
Silva, Josineudson Augusto II. V. [UNESP]
Chardulo, Luís Artur L. [UNESP]
Curi, Rogério A. [UNESP]
dc.subject.por.fl_str_mv ERE1
Horse
Molecular markers
QTL
SNP
Speed
topic ERE1
Horse
Molecular markers
QTL
SNP
Speed
description The objectives of this study were to evaluate differences between the racing and cutting lines of Quarter Horses in the allele frequencies of polymorphisms identified in the chromosomal region of the myostatin gene (MSTN, ECA18) and to analyze the association of polymorphisms in this chromosomal region with the estimated breeding values (EBVs) for racing performance, given by the maximum speed index, height at withers (HW), thoracic perimeter (TP), and body length (BL) in the racing line, and with EBVs for HW, TP, and BL in the cutting line. Genomic, phenotypic, and pedigree data from 420 horses of both sexes, registered in the Brazilian Association of Quarter Horse breeders, were used (352 of racing line and 68 of cutting line). In the genome region studied (MSTN ± 2 Mb), 46 SNPs and one SINE (ERE1) shared among the cutting and racing lines were identified, and the allele frequencies of 32 SNPs and the one SINE differed significantly between the two lines (P <.05). Furthermore, the part of this region closest to the MSTN (±1 Mb) was found to be less polymorphic in the racing line. Regarding phenotype-associated polymorphisms (unadjusted P <.05), those related to HW in the racing line are highlighted because of their large number and extensive linkage disequilibrium. In addition, these markers exhibited significantly higher frequencies of the favorable allele compared to the cutting line.
publishDate 2018
dc.date.none.fl_str_mv 2018-12-01
2019-10-06T16:53:15Z
2019-10-06T16:53:15Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.jevs.2018.09.007
Journal of Equine Veterinary Science, v. 71, p. 75-83.
0737-0806
http://hdl.handle.net/11449/189819
10.1016/j.jevs.2018.09.007
2-s2.0-85055109515
3514713413919126
0000-0001-6289-0406
url http://dx.doi.org/10.1016/j.jevs.2018.09.007
http://hdl.handle.net/11449/189819
identifier_str_mv Journal of Equine Veterinary Science, v. 71, p. 75-83.
0737-0806
10.1016/j.jevs.2018.09.007
2-s2.0-85055109515
3514713413919126
0000-0001-6289-0406
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Journal of Equine Veterinary Science
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 75-83
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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