The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae)

Detalhes bibliográficos
Autor(a) principal: Silva, Saura R. [UNESP]
Data de Publicação: 2017
Outros Autores: Pinheiro, Daniel G. [UNESP], Meer, Elliott J., Michael, Todd P., Varani, Alessandro M. [UNESP], Miranda, Vitor F. O. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1007/s12686-016-0653-5
http://hdl.handle.net/11449/174561
Resumo: Utricularia foliosa L., commonly known as leafy bladderwort, is a widespread aquatic carnivorous plant from the Lentibulariaceae family. The species of the Utricularia and Genlisea genera are known to possess the smallest nuclear genomes across angiosperms. This study reveals that U. foliosa have a typical chloroplast genome of 150,851 bp in length, comprised of a large single-copy region (LSC) of 82,720 bp, a small single-copy region (SSC) of 17,481 bp, and inverted repeat regions (IRs) of 25,325 bp. A total of 139 genes, 88 of which are protein coding genes, 37 tRNA genes, eight rRNA genes and six pseudogenes were identified. All plastid NAD(P)H-dehydrogenase genes are present as intact copies. Phylogenetic analyses indicate that U. foliosa is closely related to other suspended or affixed aquatic species belonging to the Utricularia sect. Utricularia.
id UNSP_7a3b16f3d7bc41c044e5c882ab9539a6
oai_identifier_str oai:repositorio.unesp.br:11449/174561
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae)BladderwortCarnivorous plantCpDNALentibulariaceaePlastomeUtricularia foliosa L., commonly known as leafy bladderwort, is a widespread aquatic carnivorous plant from the Lentibulariaceae family. The species of the Utricularia and Genlisea genera are known to possess the smallest nuclear genomes across angiosperms. This study reveals that U. foliosa have a typical chloroplast genome of 150,851 bp in length, comprised of a large single-copy region (LSC) of 82,720 bp, a small single-copy region (SSC) of 17,481 bp, and inverted repeat regions (IRs) of 25,325 bp. A total of 139 genes, 88 of which are protein coding genes, 37 tRNA genes, eight rRNA genes and six pseudogenes were identified. All plastid NAD(P)H-dehydrogenase genes are present as intact copies. Phylogenetic analyses indicate that U. foliosa is closely related to other suspended or affixed aquatic species belonging to the Utricularia sect. Utricularia.Instituto de Biociências UNESP - Univ Estadual Paulista, Câmpus BotucatuDepartamento de Tecnologia Faculdade de Ciências Agrárias e Veterinárias UNESP – Univ Estadual Paulista, Câmpus JaboticabalIbis Bioscience Computational GenomicsDepartamento de Biologia Aplicada à Agropecuária Faculdade de Ciências Agrárias e Veterinárias UNESP - Univ Estadual Paulista, Câmpus JaboticabalInstituto de Biociências UNESP - Univ Estadual Paulista, Câmpus BotucatuDepartamento de Tecnologia Faculdade de Ciências Agrárias e Veterinárias UNESP – Univ Estadual Paulista, Câmpus JaboticabalDepartamento de Biologia Aplicada à Agropecuária Faculdade de Ciências Agrárias e Veterinárias UNESP - Univ Estadual Paulista, Câmpus JaboticabalUniversidade Estadual Paulista (Unesp)Computational GenomicsSilva, Saura R. [UNESP]Pinheiro, Daniel G. [UNESP]Meer, Elliott J.Michael, Todd P.Varani, Alessandro M. [UNESP]Miranda, Vitor F. O. [UNESP]2018-12-11T17:11:43Z2018-12-11T17:11:43Z2017-06-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article213-216application/pdfhttp://dx.doi.org/10.1007/s12686-016-0653-5Conservation Genetics Resources, v. 9, n. 2, p. 213-216, 2017.1877-72601877-7252http://hdl.handle.net/11449/17456110.1007/s12686-016-0653-52-s2.0-850190914552-s2.0-85019091455.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengConservation Genetics Resources0,4300,430info:eu-repo/semantics/openAccess2023-11-06T06:06:20Zoai:repositorio.unesp.br:11449/174561Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-11-06T06:06:20Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae)
title The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae)
spellingShingle The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae)
Silva, Saura R. [UNESP]
Bladderwort
Carnivorous plant
CpDNA
Lentibulariaceae
Plastome
title_short The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae)
title_full The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae)
title_fullStr The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae)
title_full_unstemmed The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae)
title_sort The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae)
author Silva, Saura R. [UNESP]
author_facet Silva, Saura R. [UNESP]
Pinheiro, Daniel G. [UNESP]
Meer, Elliott J.
Michael, Todd P.
Varani, Alessandro M. [UNESP]
Miranda, Vitor F. O. [UNESP]
author_role author
author2 Pinheiro, Daniel G. [UNESP]
Meer, Elliott J.
Michael, Todd P.
Varani, Alessandro M. [UNESP]
Miranda, Vitor F. O. [UNESP]
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Computational Genomics
dc.contributor.author.fl_str_mv Silva, Saura R. [UNESP]
Pinheiro, Daniel G. [UNESP]
Meer, Elliott J.
Michael, Todd P.
Varani, Alessandro M. [UNESP]
Miranda, Vitor F. O. [UNESP]
dc.subject.por.fl_str_mv Bladderwort
Carnivorous plant
CpDNA
Lentibulariaceae
Plastome
topic Bladderwort
Carnivorous plant
CpDNA
Lentibulariaceae
Plastome
description Utricularia foliosa L., commonly known as leafy bladderwort, is a widespread aquatic carnivorous plant from the Lentibulariaceae family. The species of the Utricularia and Genlisea genera are known to possess the smallest nuclear genomes across angiosperms. This study reveals that U. foliosa have a typical chloroplast genome of 150,851 bp in length, comprised of a large single-copy region (LSC) of 82,720 bp, a small single-copy region (SSC) of 17,481 bp, and inverted repeat regions (IRs) of 25,325 bp. A total of 139 genes, 88 of which are protein coding genes, 37 tRNA genes, eight rRNA genes and six pseudogenes were identified. All plastid NAD(P)H-dehydrogenase genes are present as intact copies. Phylogenetic analyses indicate that U. foliosa is closely related to other suspended or affixed aquatic species belonging to the Utricularia sect. Utricularia.
publishDate 2017
dc.date.none.fl_str_mv 2017-06-01
2018-12-11T17:11:43Z
2018-12-11T17:11:43Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1007/s12686-016-0653-5
Conservation Genetics Resources, v. 9, n. 2, p. 213-216, 2017.
1877-7260
1877-7252
http://hdl.handle.net/11449/174561
10.1007/s12686-016-0653-5
2-s2.0-85019091455
2-s2.0-85019091455.pdf
url http://dx.doi.org/10.1007/s12686-016-0653-5
http://hdl.handle.net/11449/174561
identifier_str_mv Conservation Genetics Resources, v. 9, n. 2, p. 213-216, 2017.
1877-7260
1877-7252
10.1007/s12686-016-0653-5
2-s2.0-85019091455
2-s2.0-85019091455.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Conservation Genetics Resources
0,430
0,430
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 213-216
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1799964833424080896