The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae)
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1007/s12686-016-0653-5 http://hdl.handle.net/11449/174561 |
Resumo: | Utricularia foliosa L., commonly known as leafy bladderwort, is a widespread aquatic carnivorous plant from the Lentibulariaceae family. The species of the Utricularia and Genlisea genera are known to possess the smallest nuclear genomes across angiosperms. This study reveals that U. foliosa have a typical chloroplast genome of 150,851 bp in length, comprised of a large single-copy region (LSC) of 82,720 bp, a small single-copy region (SSC) of 17,481 bp, and inverted repeat regions (IRs) of 25,325 bp. A total of 139 genes, 88 of which are protein coding genes, 37 tRNA genes, eight rRNA genes and six pseudogenes were identified. All plastid NAD(P)H-dehydrogenase genes are present as intact copies. Phylogenetic analyses indicate that U. foliosa is closely related to other suspended or affixed aquatic species belonging to the Utricularia sect. Utricularia. |
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The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae)BladderwortCarnivorous plantCpDNALentibulariaceaePlastomeUtricularia foliosa L., commonly known as leafy bladderwort, is a widespread aquatic carnivorous plant from the Lentibulariaceae family. The species of the Utricularia and Genlisea genera are known to possess the smallest nuclear genomes across angiosperms. This study reveals that U. foliosa have a typical chloroplast genome of 150,851 bp in length, comprised of a large single-copy region (LSC) of 82,720 bp, a small single-copy region (SSC) of 17,481 bp, and inverted repeat regions (IRs) of 25,325 bp. A total of 139 genes, 88 of which are protein coding genes, 37 tRNA genes, eight rRNA genes and six pseudogenes were identified. All plastid NAD(P)H-dehydrogenase genes are present as intact copies. Phylogenetic analyses indicate that U. foliosa is closely related to other suspended or affixed aquatic species belonging to the Utricularia sect. Utricularia.Instituto de Biociências UNESP - Univ Estadual Paulista, Câmpus BotucatuDepartamento de Tecnologia Faculdade de Ciências Agrárias e Veterinárias UNESP – Univ Estadual Paulista, Câmpus JaboticabalIbis Bioscience Computational GenomicsDepartamento de Biologia Aplicada à Agropecuária Faculdade de Ciências Agrárias e Veterinárias UNESP - Univ Estadual Paulista, Câmpus JaboticabalInstituto de Biociências UNESP - Univ Estadual Paulista, Câmpus BotucatuDepartamento de Tecnologia Faculdade de Ciências Agrárias e Veterinárias UNESP – Univ Estadual Paulista, Câmpus JaboticabalDepartamento de Biologia Aplicada à Agropecuária Faculdade de Ciências Agrárias e Veterinárias UNESP - Univ Estadual Paulista, Câmpus JaboticabalUniversidade Estadual Paulista (Unesp)Computational GenomicsSilva, Saura R. [UNESP]Pinheiro, Daniel G. [UNESP]Meer, Elliott J.Michael, Todd P.Varani, Alessandro M. [UNESP]Miranda, Vitor F. O. [UNESP]2018-12-11T17:11:43Z2018-12-11T17:11:43Z2017-06-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article213-216application/pdfhttp://dx.doi.org/10.1007/s12686-016-0653-5Conservation Genetics Resources, v. 9, n. 2, p. 213-216, 2017.1877-72601877-7252http://hdl.handle.net/11449/17456110.1007/s12686-016-0653-52-s2.0-850190914552-s2.0-85019091455.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengConservation Genetics Resources0,4300,430info:eu-repo/semantics/openAccess2023-11-06T06:06:20Zoai:repositorio.unesp.br:11449/174561Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-11-06T06:06:20Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae) |
title |
The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae) |
spellingShingle |
The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae) Silva, Saura R. [UNESP] Bladderwort Carnivorous plant CpDNA Lentibulariaceae Plastome |
title_short |
The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae) |
title_full |
The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae) |
title_fullStr |
The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae) |
title_full_unstemmed |
The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae) |
title_sort |
The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae) |
author |
Silva, Saura R. [UNESP] |
author_facet |
Silva, Saura R. [UNESP] Pinheiro, Daniel G. [UNESP] Meer, Elliott J. Michael, Todd P. Varani, Alessandro M. [UNESP] Miranda, Vitor F. O. [UNESP] |
author_role |
author |
author2 |
Pinheiro, Daniel G. [UNESP] Meer, Elliott J. Michael, Todd P. Varani, Alessandro M. [UNESP] Miranda, Vitor F. O. [UNESP] |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Computational Genomics |
dc.contributor.author.fl_str_mv |
Silva, Saura R. [UNESP] Pinheiro, Daniel G. [UNESP] Meer, Elliott J. Michael, Todd P. Varani, Alessandro M. [UNESP] Miranda, Vitor F. O. [UNESP] |
dc.subject.por.fl_str_mv |
Bladderwort Carnivorous plant CpDNA Lentibulariaceae Plastome |
topic |
Bladderwort Carnivorous plant CpDNA Lentibulariaceae Plastome |
description |
Utricularia foliosa L., commonly known as leafy bladderwort, is a widespread aquatic carnivorous plant from the Lentibulariaceae family. The species of the Utricularia and Genlisea genera are known to possess the smallest nuclear genomes across angiosperms. This study reveals that U. foliosa have a typical chloroplast genome of 150,851 bp in length, comprised of a large single-copy region (LSC) of 82,720 bp, a small single-copy region (SSC) of 17,481 bp, and inverted repeat regions (IRs) of 25,325 bp. A total of 139 genes, 88 of which are protein coding genes, 37 tRNA genes, eight rRNA genes and six pseudogenes were identified. All plastid NAD(P)H-dehydrogenase genes are present as intact copies. Phylogenetic analyses indicate that U. foliosa is closely related to other suspended or affixed aquatic species belonging to the Utricularia sect. Utricularia. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-06-01 2018-12-11T17:11:43Z 2018-12-11T17:11:43Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1007/s12686-016-0653-5 Conservation Genetics Resources, v. 9, n. 2, p. 213-216, 2017. 1877-7260 1877-7252 http://hdl.handle.net/11449/174561 10.1007/s12686-016-0653-5 2-s2.0-85019091455 2-s2.0-85019091455.pdf |
url |
http://dx.doi.org/10.1007/s12686-016-0653-5 http://hdl.handle.net/11449/174561 |
identifier_str_mv |
Conservation Genetics Resources, v. 9, n. 2, p. 213-216, 2017. 1877-7260 1877-7252 10.1007/s12686-016-0653-5 2-s2.0-85019091455 2-s2.0-85019091455.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Conservation Genetics Resources 0,430 0,430 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
213-216 application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1799964833424080896 |