Susceptibility of field-collected nyssorhynchus darlingi to plasmodium spp. In western amazonian Brazil

Detalhes bibliográficos
Autor(a) principal: Alonso, Diego Peres [UNESP]
Data de Publicação: 2021
Outros Autores: Alvarez, Marcus Vinicius Niz [UNESP], Ribolla, Paulo Eduardo Martins [UNESP], Conn, Jan E., de Oliveira, Tatiane Marques Porangaba, Sallum, Maria Anice Mureb
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3390/genes12111693
http://hdl.handle.net/11449/233774
Resumo: Mosquito susceptibility to Plasmodium spp. infection is of paramount importance for malaria occurrence and sustainable transmission. Therefore, understanding the genetic features underlying the mechanisms of susceptibility traits is pivotal to assessing malaria transmission dynamics in endemic areas. The aim of this study was to investigate the susceptibility of Nyssorhynchus darlingi—the dominant malaria vector in Brazil—to Plasmodium spp. using a reduced representation genome-sequencing protocol. The investigation was performed using a genome-wide association study (GWAS) to identify mosquito genes that are predicted to modulate the susceptibility of natural populations of the mosquito to Plasmodium infection. After applying the sequence alignment protocol, we generated the variant panel and filtered variants; leading to the detection of 202,837 SNPs in all specimens analyzed. The resulting panel was used to perform GWAS by comparing the pool of SNP variants present in Ny. darlingi infected with Plasmodium spp. with the pool obtained in field-collected mosquitoes with no evidence of infection by the parasite (all mosquitoes were tested separately using RT-PCR). The GWAS results for infection status showed two statistically significant variants adjacent to important genes that can be associated with susceptibility to Plasmodium infec-tion: Cytochrome P450 (cyp450) and chitinase. This study provides relevant knowledge on malaria transmission dynamics by using a genomic approach to identify mosquito genes associated with susceptibility to Plasmodium infection in Ny. darlingi in western Amazonian Brazil.
id UNSP_83f9fdb7228eb36f30250f9616162971
oai_identifier_str oai:repositorio.unesp.br:11449/233774
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling Susceptibility of field-collected nyssorhynchus darlingi to plasmodium spp. In western amazonian BrazilChitinaseCytochrome P450GWASNextRADNyssorhynchus darlingiMosquito susceptibility to Plasmodium spp. infection is of paramount importance for malaria occurrence and sustainable transmission. Therefore, understanding the genetic features underlying the mechanisms of susceptibility traits is pivotal to assessing malaria transmission dynamics in endemic areas. The aim of this study was to investigate the susceptibility of Nyssorhynchus darlingi—the dominant malaria vector in Brazil—to Plasmodium spp. using a reduced representation genome-sequencing protocol. The investigation was performed using a genome-wide association study (GWAS) to identify mosquito genes that are predicted to modulate the susceptibility of natural populations of the mosquito to Plasmodium infection. After applying the sequence alignment protocol, we generated the variant panel and filtered variants; leading to the detection of 202,837 SNPs in all specimens analyzed. The resulting panel was used to perform GWAS by comparing the pool of SNP variants present in Ny. darlingi infected with Plasmodium spp. with the pool obtained in field-collected mosquitoes with no evidence of infection by the parasite (all mosquitoes were tested separately using RT-PCR). The GWAS results for infection status showed two statistically significant variants adjacent to important genes that can be associated with susceptibility to Plasmodium infec-tion: Cytochrome P450 (cyp450) and chitinase. This study provides relevant knowledge on malaria transmission dynamics by using a genomic approach to identify mosquito genes associated with susceptibility to Plasmodium infection in Ny. darlingi in western Amazonian Brazil.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)National Institutes of HealthConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Biotechnology Institute and Bioscience Institute Sao Paulo State University UNESPDepartamento de Epidemiologia Faculdade de Saúde Pública Universidade de São PauloWadsworth Center New York State Department of HealthDepartment of Biomedical Sciences School of Public Health State University of New YorkBiotechnology Institute and Bioscience Institute Sao Paulo State University UNESPFAPESP: 2014/26229-7National Institutes of Health: 2R01AI110112-06A1CNPq: 301877/2016-5Universidade Estadual Paulista (UNESP)Universidade de São Paulo (USP)New York State Department of HealthState University of New YorkAlonso, Diego Peres [UNESP]Alvarez, Marcus Vinicius Niz [UNESP]Ribolla, Paulo Eduardo Martins [UNESP]Conn, Jan E.de Oliveira, Tatiane Marques PorangabaSallum, Maria Anice Mureb2022-05-01T10:18:54Z2022-05-01T10:18:54Z2021-11-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3390/genes12111693Genes, v. 12, n. 11, 2021.2073-4425http://hdl.handle.net/11449/23377410.3390/genes121116932-s2.0-85118474763Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGenesinfo:eu-repo/semantics/openAccess2022-05-01T10:18:54Zoai:repositorio.unesp.br:11449/233774Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462022-05-01T10:18:54Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Susceptibility of field-collected nyssorhynchus darlingi to plasmodium spp. In western amazonian Brazil
title Susceptibility of field-collected nyssorhynchus darlingi to plasmodium spp. In western amazonian Brazil
spellingShingle Susceptibility of field-collected nyssorhynchus darlingi to plasmodium spp. In western amazonian Brazil
Alonso, Diego Peres [UNESP]
Chitinase
Cytochrome P450
GWAS
NextRAD
Nyssorhynchus darlingi
title_short Susceptibility of field-collected nyssorhynchus darlingi to plasmodium spp. In western amazonian Brazil
title_full Susceptibility of field-collected nyssorhynchus darlingi to plasmodium spp. In western amazonian Brazil
title_fullStr Susceptibility of field-collected nyssorhynchus darlingi to plasmodium spp. In western amazonian Brazil
title_full_unstemmed Susceptibility of field-collected nyssorhynchus darlingi to plasmodium spp. In western amazonian Brazil
title_sort Susceptibility of field-collected nyssorhynchus darlingi to plasmodium spp. In western amazonian Brazil
author Alonso, Diego Peres [UNESP]
author_facet Alonso, Diego Peres [UNESP]
Alvarez, Marcus Vinicius Niz [UNESP]
Ribolla, Paulo Eduardo Martins [UNESP]
Conn, Jan E.
de Oliveira, Tatiane Marques Porangaba
Sallum, Maria Anice Mureb
author_role author
author2 Alvarez, Marcus Vinicius Niz [UNESP]
Ribolla, Paulo Eduardo Martins [UNESP]
Conn, Jan E.
de Oliveira, Tatiane Marques Porangaba
Sallum, Maria Anice Mureb
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Universidade de São Paulo (USP)
New York State Department of Health
State University of New York
dc.contributor.author.fl_str_mv Alonso, Diego Peres [UNESP]
Alvarez, Marcus Vinicius Niz [UNESP]
Ribolla, Paulo Eduardo Martins [UNESP]
Conn, Jan E.
de Oliveira, Tatiane Marques Porangaba
Sallum, Maria Anice Mureb
dc.subject.por.fl_str_mv Chitinase
Cytochrome P450
GWAS
NextRAD
Nyssorhynchus darlingi
topic Chitinase
Cytochrome P450
GWAS
NextRAD
Nyssorhynchus darlingi
description Mosquito susceptibility to Plasmodium spp. infection is of paramount importance for malaria occurrence and sustainable transmission. Therefore, understanding the genetic features underlying the mechanisms of susceptibility traits is pivotal to assessing malaria transmission dynamics in endemic areas. The aim of this study was to investigate the susceptibility of Nyssorhynchus darlingi—the dominant malaria vector in Brazil—to Plasmodium spp. using a reduced representation genome-sequencing protocol. The investigation was performed using a genome-wide association study (GWAS) to identify mosquito genes that are predicted to modulate the susceptibility of natural populations of the mosquito to Plasmodium infection. After applying the sequence alignment protocol, we generated the variant panel and filtered variants; leading to the detection of 202,837 SNPs in all specimens analyzed. The resulting panel was used to perform GWAS by comparing the pool of SNP variants present in Ny. darlingi infected with Plasmodium spp. with the pool obtained in field-collected mosquitoes with no evidence of infection by the parasite (all mosquitoes were tested separately using RT-PCR). The GWAS results for infection status showed two statistically significant variants adjacent to important genes that can be associated with susceptibility to Plasmodium infec-tion: Cytochrome P450 (cyp450) and chitinase. This study provides relevant knowledge on malaria transmission dynamics by using a genomic approach to identify mosquito genes associated with susceptibility to Plasmodium infection in Ny. darlingi in western Amazonian Brazil.
publishDate 2021
dc.date.none.fl_str_mv 2021-11-01
2022-05-01T10:18:54Z
2022-05-01T10:18:54Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3390/genes12111693
Genes, v. 12, n. 11, 2021.
2073-4425
http://hdl.handle.net/11449/233774
10.3390/genes12111693
2-s2.0-85118474763
url http://dx.doi.org/10.3390/genes12111693
http://hdl.handle.net/11449/233774
identifier_str_mv Genes, v. 12, n. 11, 2021.
2073-4425
10.3390/genes12111693
2-s2.0-85118474763
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Genes
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1799965265253892096