Studies on the Interaction of Rose Bengal with the Human Serum Albumin Protein under Spectroscopic and Docking Simulations Aspects in the Characterization of Binding Sites

Detalhes bibliográficos
Autor(a) principal: Yoguim, Maurício I. [UNESP]
Data de Publicação: 2022
Outros Autores: Grandini, Giulia S. [UNESP], Bertozo, Luiza de C. [UNESP], Caracelli, Ignez, Ximenes, Valdecir F. [UNESP], de Souza, Aguinaldo R. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3390/chemosensors10110440
http://hdl.handle.net/11449/246259
Resumo: Rose Bengal (RB) is a xanthene dye used as a sensitizer to convert triplet (3O2) to singlet oxygen (1O2). This photophysical property makes it one of the most used dyes in photodynamic therapy. Thus, understanding its interaction with biomacromolecules can provide helpful information about its mode of action and application. The protein chosen for this study was human serum albumin (HSA), which has nine binding sites for fatty acids (FA), and at least three sites for interactions of drugs (DS). The complexation of HSA with RB caused a maximum bathochromic shift in its absorption. From this displacement and the application of the Benesi–Hildebrand model, the ligand–protein association constant (3.90 ± 0.08 × 105 M−1) was obtained. Applying the Job’s Plot method resulted in a 6:1 (ligand-protein) stoichiometry. The determination of preferred binding sites was performed by measuring the association constant in the presence of drugs for which their binding sites in HSA are already well established, such as warfarin (DS1), ibuprofen (DS2 and FA6), digitoxin (DS3), diazepam (DS2), and diflunisal (DS2 and FA6). From these studies, it was found that RB is able to bind at DS1, DS3, and FA6 sites but not at DS2. Subsequently, molecular docking studies using the 2BX8 and 2BXE crystallographic structures were performed and corroborated the experimental results. The lowest energy poses were −52.13, −58.79, and −67.55 kcal mol−1 at DS1, DS3, and FA6, respectively. Conversely, DS2 was the lower affinity binding site. In conclusion, HSA has a high affinity for RB, being able to bind up to six dye molecules.
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spelling Studies on the Interaction of Rose Bengal with the Human Serum Albumin Protein under Spectroscopic and Docking Simulations Aspects in the Characterization of Binding SitesHSAinteraction sitesmolecular dockingRose BengalRose Bengal (RB) is a xanthene dye used as a sensitizer to convert triplet (3O2) to singlet oxygen (1O2). This photophysical property makes it one of the most used dyes in photodynamic therapy. Thus, understanding its interaction with biomacromolecules can provide helpful information about its mode of action and application. The protein chosen for this study was human serum albumin (HSA), which has nine binding sites for fatty acids (FA), and at least three sites for interactions of drugs (DS). The complexation of HSA with RB caused a maximum bathochromic shift in its absorption. From this displacement and the application of the Benesi–Hildebrand model, the ligand–protein association constant (3.90 ± 0.08 × 105 M−1) was obtained. Applying the Job’s Plot method resulted in a 6:1 (ligand-protein) stoichiometry. The determination of preferred binding sites was performed by measuring the association constant in the presence of drugs for which their binding sites in HSA are already well established, such as warfarin (DS1), ibuprofen (DS2 and FA6), digitoxin (DS3), diazepam (DS2), and diflunisal (DS2 and FA6). From these studies, it was found that RB is able to bind at DS1, DS3, and FA6 sites but not at DS2. Subsequently, molecular docking studies using the 2BX8 and 2BXE crystallographic structures were performed and corroborated the experimental results. The lowest energy poses were −52.13, −58.79, and −67.55 kcal mol−1 at DS1, DS3, and FA6, respectively. Conversely, DS2 was the lower affinity binding site. In conclusion, HSA has a high affinity for RB, being able to bind up to six dye molecules.Department of Chemistry Faculty of Sciences São Paulo State University, Av. Luiz Edmundo Carrijo Coube 14-01Department of Physics Federal University of São Carlos, Rod. Washington Luiz, km 235, s/n, São CarlosDepartment of Chemistry Faculty of Sciences São Paulo State University, Av. Luiz Edmundo Carrijo Coube 14-01Universidade Estadual Paulista (UNESP)Universidade Federal de São Carlos (UFSCar)Yoguim, Maurício I. [UNESP]Grandini, Giulia S. [UNESP]Bertozo, Luiza de C. [UNESP]Caracelli, IgnezXimenes, Valdecir F. [UNESP]de Souza, Aguinaldo R. [UNESP]2023-07-29T12:36:03Z2023-07-29T12:36:03Z2022-11-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3390/chemosensors10110440Chemosensors, v. 10, n. 11, 2022.2227-9040http://hdl.handle.net/11449/24625910.3390/chemosensors101104402-s2.0-85141553845Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengChemosensorsinfo:eu-repo/semantics/openAccess2023-07-29T12:36:03Zoai:repositorio.unesp.br:11449/246259Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-07-29T12:36:03Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Studies on the Interaction of Rose Bengal with the Human Serum Albumin Protein under Spectroscopic and Docking Simulations Aspects in the Characterization of Binding Sites
title Studies on the Interaction of Rose Bengal with the Human Serum Albumin Protein under Spectroscopic and Docking Simulations Aspects in the Characterization of Binding Sites
spellingShingle Studies on the Interaction of Rose Bengal with the Human Serum Albumin Protein under Spectroscopic and Docking Simulations Aspects in the Characterization of Binding Sites
Yoguim, Maurício I. [UNESP]
HSA
interaction sites
molecular docking
Rose Bengal
title_short Studies on the Interaction of Rose Bengal with the Human Serum Albumin Protein under Spectroscopic and Docking Simulations Aspects in the Characterization of Binding Sites
title_full Studies on the Interaction of Rose Bengal with the Human Serum Albumin Protein under Spectroscopic and Docking Simulations Aspects in the Characterization of Binding Sites
title_fullStr Studies on the Interaction of Rose Bengal with the Human Serum Albumin Protein under Spectroscopic and Docking Simulations Aspects in the Characterization of Binding Sites
title_full_unstemmed Studies on the Interaction of Rose Bengal with the Human Serum Albumin Protein under Spectroscopic and Docking Simulations Aspects in the Characterization of Binding Sites
title_sort Studies on the Interaction of Rose Bengal with the Human Serum Albumin Protein under Spectroscopic and Docking Simulations Aspects in the Characterization of Binding Sites
author Yoguim, Maurício I. [UNESP]
author_facet Yoguim, Maurício I. [UNESP]
Grandini, Giulia S. [UNESP]
Bertozo, Luiza de C. [UNESP]
Caracelli, Ignez
Ximenes, Valdecir F. [UNESP]
de Souza, Aguinaldo R. [UNESP]
author_role author
author2 Grandini, Giulia S. [UNESP]
Bertozo, Luiza de C. [UNESP]
Caracelli, Ignez
Ximenes, Valdecir F. [UNESP]
de Souza, Aguinaldo R. [UNESP]
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Universidade Federal de São Carlos (UFSCar)
dc.contributor.author.fl_str_mv Yoguim, Maurício I. [UNESP]
Grandini, Giulia S. [UNESP]
Bertozo, Luiza de C. [UNESP]
Caracelli, Ignez
Ximenes, Valdecir F. [UNESP]
de Souza, Aguinaldo R. [UNESP]
dc.subject.por.fl_str_mv HSA
interaction sites
molecular docking
Rose Bengal
topic HSA
interaction sites
molecular docking
Rose Bengal
description Rose Bengal (RB) is a xanthene dye used as a sensitizer to convert triplet (3O2) to singlet oxygen (1O2). This photophysical property makes it one of the most used dyes in photodynamic therapy. Thus, understanding its interaction with biomacromolecules can provide helpful information about its mode of action and application. The protein chosen for this study was human serum albumin (HSA), which has nine binding sites for fatty acids (FA), and at least three sites for interactions of drugs (DS). The complexation of HSA with RB caused a maximum bathochromic shift in its absorption. From this displacement and the application of the Benesi–Hildebrand model, the ligand–protein association constant (3.90 ± 0.08 × 105 M−1) was obtained. Applying the Job’s Plot method resulted in a 6:1 (ligand-protein) stoichiometry. The determination of preferred binding sites was performed by measuring the association constant in the presence of drugs for which their binding sites in HSA are already well established, such as warfarin (DS1), ibuprofen (DS2 and FA6), digitoxin (DS3), diazepam (DS2), and diflunisal (DS2 and FA6). From these studies, it was found that RB is able to bind at DS1, DS3, and FA6 sites but not at DS2. Subsequently, molecular docking studies using the 2BX8 and 2BXE crystallographic structures were performed and corroborated the experimental results. The lowest energy poses were −52.13, −58.79, and −67.55 kcal mol−1 at DS1, DS3, and FA6, respectively. Conversely, DS2 was the lower affinity binding site. In conclusion, HSA has a high affinity for RB, being able to bind up to six dye molecules.
publishDate 2022
dc.date.none.fl_str_mv 2022-11-01
2023-07-29T12:36:03Z
2023-07-29T12:36:03Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3390/chemosensors10110440
Chemosensors, v. 10, n. 11, 2022.
2227-9040
http://hdl.handle.net/11449/246259
10.3390/chemosensors10110440
2-s2.0-85141553845
url http://dx.doi.org/10.3390/chemosensors10110440
http://hdl.handle.net/11449/246259
identifier_str_mv Chemosensors, v. 10, n. 11, 2022.
2227-9040
10.3390/chemosensors10110440
2-s2.0-85141553845
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Chemosensors
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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