Genetic diversity of emerging hemotropic mycoplasmas in domestic pigs from Brazil

Detalhes bibliográficos
Autor(a) principal: Sonalio, Karina [UNESP]
Data de Publicação: 2020
Outros Autores: Perles, Lívia [UNESP], Gatto, Igor Renan H., do Amaral, Renan B. [UNESP], Almeida, Henrique M. S. [UNESP], Galdeano, José Vanderlei B., Vieira, Rafael F. C., André, Marcos R. [UNESP], de Oliveira, Luis Guilherme [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1111/tbed.13767
http://hdl.handle.net/11449/199281
Resumo: Mycoplasma suis and Mycoplasma parvum bind strongly to erythrocytes and may cause clinical hemoplasmosis in swine, affecting several age groups. Mycoplasma spp. infected animals may be asymptomatic carriers and/or show nonspecific clinical signs. In Brazil, information on genetic diversity associated with porcine hemoplasmas (PH) has not been described yet. Therefore, this study has aimed to detect, quantify and characterize the genetic diversity of PH in finishing pigs from technified farms in the state of Goiás, central-western Brazil. Ethylenediaminetetraacetic acid-blood samples from 450 swine belonging to 30 different farms from Goiás state were collected at the slaughterhouse. Quantitative real-time PCR (qPCR) assays were performed for the molecular detection and quantification of PH 16S rRNA gene fragments. Cloning and sequencing of 16S and 23S rRNA amplicons were performed to evaluate the genetic diversity. Moreover, a questionnaire was applied to each farm manager to obtain epidemiological information about the herd. The results on qPCR showed herd occurrence of 68.89% for PH. Quantification values (starting quantity [SQ]) ranged from 8.43 × 10−1 to 4.69 × 106 copies/µl, and 52.71% of the samples presented SQ values equal or lower than 1 × 103 copies/µl. Risk factors were not evaluated once all farms had at least one positive animal. However, Spearman's coefficient test revealed that the occurrence of PH was inversely associated with the number of farrows per week, weaned piglets per week, and weight at slaughter. Phylogenetic analysis based on maximum likelihood and Bayesian methods showed that the 16S rRNA and 23S rRNA gene sequences obtained from five samples formed a single cluster closely related to M. parvum. Genotype analysis using DNASP software confirmed seven and four different 16S and 23S rRNA genotypes among the cloned amplicons, indicating that there are several genotypes of M. parvum circulating in individual pigs and among pig farms in central-western Brazil.
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spelling Genetic diversity of emerging hemotropic mycoplasmas in domestic pigs from Brazilemerging diseasegenotypesintensive pig farmingMycoplasma parvumMycoplasma suisporcine hemoplasmasMycoplasma suis and Mycoplasma parvum bind strongly to erythrocytes and may cause clinical hemoplasmosis in swine, affecting several age groups. Mycoplasma spp. infected animals may be asymptomatic carriers and/or show nonspecific clinical signs. In Brazil, information on genetic diversity associated with porcine hemoplasmas (PH) has not been described yet. Therefore, this study has aimed to detect, quantify and characterize the genetic diversity of PH in finishing pigs from technified farms in the state of Goiás, central-western Brazil. Ethylenediaminetetraacetic acid-blood samples from 450 swine belonging to 30 different farms from Goiás state were collected at the slaughterhouse. Quantitative real-time PCR (qPCR) assays were performed for the molecular detection and quantification of PH 16S rRNA gene fragments. Cloning and sequencing of 16S and 23S rRNA amplicons were performed to evaluate the genetic diversity. Moreover, a questionnaire was applied to each farm manager to obtain epidemiological information about the herd. The results on qPCR showed herd occurrence of 68.89% for PH. Quantification values (starting quantity [SQ]) ranged from 8.43 × 10−1 to 4.69 × 106 copies/µl, and 52.71% of the samples presented SQ values equal or lower than 1 × 103 copies/µl. Risk factors were not evaluated once all farms had at least one positive animal. However, Spearman's coefficient test revealed that the occurrence of PH was inversely associated with the number of farrows per week, weaned piglets per week, and weight at slaughter. Phylogenetic analysis based on maximum likelihood and Bayesian methods showed that the 16S rRNA and 23S rRNA gene sequences obtained from five samples formed a single cluster closely related to M. parvum. Genotype analysis using DNASP software confirmed seven and four different 16S and 23S rRNA genotypes among the cloned amplicons, indicating that there are several genotypes of M. parvum circulating in individual pigs and among pig farms in central-western Brazil.School of Agricultural and Veterinarian Sciences São Paulo State University (Unesp)Ourofino Animal HealthCOMIGO CooperativeVector-Borne Diseases Laboratory Departament of Veterinary Medicine Universidade Federal do Paraná (UFPR)Global One Health initiative (GOHi) The Ohio State UniversitySchool of Agricultural and Veterinarian Sciences São Paulo State University (Unesp)Universidade Estadual Paulista (Unesp)Ourofino Animal HealthCOMIGO CooperativeUniversidade Federal do Paraná (UFPR)The Ohio State UniversitySonalio, Karina [UNESP]Perles, Lívia [UNESP]Gatto, Igor Renan H.do Amaral, Renan B. [UNESP]Almeida, Henrique M. S. [UNESP]Galdeano, José Vanderlei B.Vieira, Rafael F. C.André, Marcos R. [UNESP]de Oliveira, Luis Guilherme [UNESP]2020-12-12T01:35:34Z2020-12-12T01:35:34Z2020-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1111/tbed.13767Transboundary and Emerging Diseases.1865-16821865-1674http://hdl.handle.net/11449/19928110.1111/tbed.137672-s2.0-85089675348Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengTransboundary and Emerging Diseasesinfo:eu-repo/semantics/openAccess2021-10-23T06:44:55Zoai:repositorio.unesp.br:11449/199281Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T06:44:55Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Genetic diversity of emerging hemotropic mycoplasmas in domestic pigs from Brazil
title Genetic diversity of emerging hemotropic mycoplasmas in domestic pigs from Brazil
spellingShingle Genetic diversity of emerging hemotropic mycoplasmas in domestic pigs from Brazil
Sonalio, Karina [UNESP]
emerging disease
genotypes
intensive pig farming
Mycoplasma parvum
Mycoplasma suis
porcine hemoplasmas
title_short Genetic diversity of emerging hemotropic mycoplasmas in domestic pigs from Brazil
title_full Genetic diversity of emerging hemotropic mycoplasmas in domestic pigs from Brazil
title_fullStr Genetic diversity of emerging hemotropic mycoplasmas in domestic pigs from Brazil
title_full_unstemmed Genetic diversity of emerging hemotropic mycoplasmas in domestic pigs from Brazil
title_sort Genetic diversity of emerging hemotropic mycoplasmas in domestic pigs from Brazil
author Sonalio, Karina [UNESP]
author_facet Sonalio, Karina [UNESP]
Perles, Lívia [UNESP]
Gatto, Igor Renan H.
do Amaral, Renan B. [UNESP]
Almeida, Henrique M. S. [UNESP]
Galdeano, José Vanderlei B.
Vieira, Rafael F. C.
André, Marcos R. [UNESP]
de Oliveira, Luis Guilherme [UNESP]
author_role author
author2 Perles, Lívia [UNESP]
Gatto, Igor Renan H.
do Amaral, Renan B. [UNESP]
Almeida, Henrique M. S. [UNESP]
Galdeano, José Vanderlei B.
Vieira, Rafael F. C.
André, Marcos R. [UNESP]
de Oliveira, Luis Guilherme [UNESP]
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Ourofino Animal Health
COMIGO Cooperative
Universidade Federal do Paraná (UFPR)
The Ohio State University
dc.contributor.author.fl_str_mv Sonalio, Karina [UNESP]
Perles, Lívia [UNESP]
Gatto, Igor Renan H.
do Amaral, Renan B. [UNESP]
Almeida, Henrique M. S. [UNESP]
Galdeano, José Vanderlei B.
Vieira, Rafael F. C.
André, Marcos R. [UNESP]
de Oliveira, Luis Guilherme [UNESP]
dc.subject.por.fl_str_mv emerging disease
genotypes
intensive pig farming
Mycoplasma parvum
Mycoplasma suis
porcine hemoplasmas
topic emerging disease
genotypes
intensive pig farming
Mycoplasma parvum
Mycoplasma suis
porcine hemoplasmas
description Mycoplasma suis and Mycoplasma parvum bind strongly to erythrocytes and may cause clinical hemoplasmosis in swine, affecting several age groups. Mycoplasma spp. infected animals may be asymptomatic carriers and/or show nonspecific clinical signs. In Brazil, information on genetic diversity associated with porcine hemoplasmas (PH) has not been described yet. Therefore, this study has aimed to detect, quantify and characterize the genetic diversity of PH in finishing pigs from technified farms in the state of Goiás, central-western Brazil. Ethylenediaminetetraacetic acid-blood samples from 450 swine belonging to 30 different farms from Goiás state were collected at the slaughterhouse. Quantitative real-time PCR (qPCR) assays were performed for the molecular detection and quantification of PH 16S rRNA gene fragments. Cloning and sequencing of 16S and 23S rRNA amplicons were performed to evaluate the genetic diversity. Moreover, a questionnaire was applied to each farm manager to obtain epidemiological information about the herd. The results on qPCR showed herd occurrence of 68.89% for PH. Quantification values (starting quantity [SQ]) ranged from 8.43 × 10−1 to 4.69 × 106 copies/µl, and 52.71% of the samples presented SQ values equal or lower than 1 × 103 copies/µl. Risk factors were not evaluated once all farms had at least one positive animal. However, Spearman's coefficient test revealed that the occurrence of PH was inversely associated with the number of farrows per week, weaned piglets per week, and weight at slaughter. Phylogenetic analysis based on maximum likelihood and Bayesian methods showed that the 16S rRNA and 23S rRNA gene sequences obtained from five samples formed a single cluster closely related to M. parvum. Genotype analysis using DNASP software confirmed seven and four different 16S and 23S rRNA genotypes among the cloned amplicons, indicating that there are several genotypes of M. parvum circulating in individual pigs and among pig farms in central-western Brazil.
publishDate 2020
dc.date.none.fl_str_mv 2020-12-12T01:35:34Z
2020-12-12T01:35:34Z
2020-01-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1111/tbed.13767
Transboundary and Emerging Diseases.
1865-1682
1865-1674
http://hdl.handle.net/11449/199281
10.1111/tbed.13767
2-s2.0-85089675348
url http://dx.doi.org/10.1111/tbed.13767
http://hdl.handle.net/11449/199281
identifier_str_mv Transboundary and Emerging Diseases.
1865-1682
1865-1674
10.1111/tbed.13767
2-s2.0-85089675348
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Transboundary and Emerging Diseases
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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