Identifying yeasts using surface enhanced Raman spectroscopy

Detalhes bibliográficos
Autor(a) principal: Lemma, Tibebe [UNESP]
Data de Publicação: 2019
Outros Autores: Wang, Jin, Arstila, Kai, Hytönen, Vesa P., Toppari, J. Jussi
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.saa.2019.04.010
http://hdl.handle.net/11449/187558
Resumo: The molecular fingerprints of yeasts Saccharomyces cerevisiae, Dekkera bruxellensis, and Wickerhamomyces anomalus (former name Pichia anomala) have been examined using surface-enhanced Raman spectroscopy (SERS) and helium ion microscopy (HIM). The SERS spectra obtained from cell cultures (lysate and non-treated cells) distinguish between these very closely related fungal species. Highly SERS active silver nano-particles suitable for detecting complex biomolecules were fabricated using a simple synthesis route. The yeast samples mixed with aggregated Ag nanoparticles yielded highly enhanced and reproducible Raman signal owing to the high density of the hot spots at the junctions of two or more Ag nanoparticles and enabled to differentiate the three species based on their unique features (spectral fingerprint). We also collected SERS spectra of the three yeast species in beer medium to demonstrate the potential of the method for industrial application. These findings demonstrate the great potential of SERS for detection and identification of fungi species based on the biochemical compositions, even in a chemically complex sample.
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spelling Identifying yeasts using surface enhanced Raman spectroscopyAggregateHelium ion microscopySERSSilver nanoparticleYeastThe molecular fingerprints of yeasts Saccharomyces cerevisiae, Dekkera bruxellensis, and Wickerhamomyces anomalus (former name Pichia anomala) have been examined using surface-enhanced Raman spectroscopy (SERS) and helium ion microscopy (HIM). The SERS spectra obtained from cell cultures (lysate and non-treated cells) distinguish between these very closely related fungal species. Highly SERS active silver nano-particles suitable for detecting complex biomolecules were fabricated using a simple synthesis route. The yeast samples mixed with aggregated Ag nanoparticles yielded highly enhanced and reproducible Raman signal owing to the high density of the hot spots at the junctions of two or more Ag nanoparticles and enabled to differentiate the three species based on their unique features (spectral fingerprint). We also collected SERS spectra of the three yeast species in beer medium to demonstrate the potential of the method for industrial application. These findings demonstrate the great potential of SERS for detection and identification of fungi species based on the biochemical compositions, even in a chemically complex sample.TekesAcademy of FinlandFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Faculdade de Clências e Tecnologia (FCT)-Universidade Estadual Paulista (UNESP)-Presidente PrudenteInstitute of Intelligent Machines Chinese Academy of SciencesNanoScience Center Department of Physics University of Jyväskylä, P.O. Box 35 (YN)Faculty of Medicine and Health Technology BioMediTech Tampere University, Arvo Ylpön katu 34Fimlab Laboratories, Biokatu 4Faculdade de Clências e Tecnologia (FCT)-Universidade Estadual Paulista (UNESP)-Presidente PrudenteTekes: 1185/31/2013Academy of Finland: 136288FAPESP: 2013/14262-7FAPESP: 2016/06424-5Academy of Finland: 263526Universidade Estadual Paulista (Unesp)Chinese Academy of SciencesUniversity of JyväskyläTampere UniversityFimlab LaboratoriesLemma, Tibebe [UNESP]Wang, JinArstila, KaiHytönen, Vesa P.Toppari, J. Jussi2019-10-06T15:40:09Z2019-10-06T15:40:09Z2019-07-05info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article299-307http://dx.doi.org/10.1016/j.saa.2019.04.010Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy, v. 218, p. 299-307.1386-1425http://hdl.handle.net/11449/18755810.1016/j.saa.2019.04.0102-s2.0-85064322776Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengSpectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopyinfo:eu-repo/semantics/openAccess2021-10-23T09:20:11Zoai:repositorio.unesp.br:11449/187558Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T09:20:11Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Identifying yeasts using surface enhanced Raman spectroscopy
title Identifying yeasts using surface enhanced Raman spectroscopy
spellingShingle Identifying yeasts using surface enhanced Raman spectroscopy
Lemma, Tibebe [UNESP]
Aggregate
Helium ion microscopy
SERS
Silver nanoparticle
Yeast
title_short Identifying yeasts using surface enhanced Raman spectroscopy
title_full Identifying yeasts using surface enhanced Raman spectroscopy
title_fullStr Identifying yeasts using surface enhanced Raman spectroscopy
title_full_unstemmed Identifying yeasts using surface enhanced Raman spectroscopy
title_sort Identifying yeasts using surface enhanced Raman spectroscopy
author Lemma, Tibebe [UNESP]
author_facet Lemma, Tibebe [UNESP]
Wang, Jin
Arstila, Kai
Hytönen, Vesa P.
Toppari, J. Jussi
author_role author
author2 Wang, Jin
Arstila, Kai
Hytönen, Vesa P.
Toppari, J. Jussi
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Chinese Academy of Sciences
University of Jyväskylä
Tampere University
Fimlab Laboratories
dc.contributor.author.fl_str_mv Lemma, Tibebe [UNESP]
Wang, Jin
Arstila, Kai
Hytönen, Vesa P.
Toppari, J. Jussi
dc.subject.por.fl_str_mv Aggregate
Helium ion microscopy
SERS
Silver nanoparticle
Yeast
topic Aggregate
Helium ion microscopy
SERS
Silver nanoparticle
Yeast
description The molecular fingerprints of yeasts Saccharomyces cerevisiae, Dekkera bruxellensis, and Wickerhamomyces anomalus (former name Pichia anomala) have been examined using surface-enhanced Raman spectroscopy (SERS) and helium ion microscopy (HIM). The SERS spectra obtained from cell cultures (lysate and non-treated cells) distinguish between these very closely related fungal species. Highly SERS active silver nano-particles suitable for detecting complex biomolecules were fabricated using a simple synthesis route. The yeast samples mixed with aggregated Ag nanoparticles yielded highly enhanced and reproducible Raman signal owing to the high density of the hot spots at the junctions of two or more Ag nanoparticles and enabled to differentiate the three species based on their unique features (spectral fingerprint). We also collected SERS spectra of the three yeast species in beer medium to demonstrate the potential of the method for industrial application. These findings demonstrate the great potential of SERS for detection and identification of fungi species based on the biochemical compositions, even in a chemically complex sample.
publishDate 2019
dc.date.none.fl_str_mv 2019-10-06T15:40:09Z
2019-10-06T15:40:09Z
2019-07-05
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.saa.2019.04.010
Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy, v. 218, p. 299-307.
1386-1425
http://hdl.handle.net/11449/187558
10.1016/j.saa.2019.04.010
2-s2.0-85064322776
url http://dx.doi.org/10.1016/j.saa.2019.04.010
http://hdl.handle.net/11449/187558
identifier_str_mv Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy, v. 218, p. 299-307.
1386-1425
10.1016/j.saa.2019.04.010
2-s2.0-85064322776
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 299-307
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1799965364128317440