Automatic algorithm for quantifying lung involvement in patients with chronic obstructive pulmonary disease, infection with SARS-CoV-2, paracoccidioidomycosis and no lung disease patients

Detalhes bibliográficos
Autor(a) principal: Alves, Allan Felipe Fattori [UNESP]
Data de Publicação: 2021
Outros Autores: Miranda, José Ricardo Arruda [UNESP], Reis, Fabiano, Oliveira, Abner Alves [UNESP], Souza, Sérgio Augusto Santana [UNESP], Fortaleza, Carlos Magno Castelo Branco [UNESP], Tanni, Suzana Erico [UNESP], Castro, José Thiago Souza, Pina, Diana Rodrigues [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1371/journal.pone.0251783
http://hdl.handle.net/11449/228960
Resumo: In this work, we aimed to develop an automatic algorithm for the quantification of total volume and lung impairments in four different diseases. The quantification was completely automatic based upon high resolution computed tomography exams. The algorithm was capable of measuring volume and differentiating pulmonary involvement including inflammatory process and fibrosis, emphysema, and ground-glass opacities. The algorithm classifies the percentage of each pulmonary involvement when compared to the entire lung volume. Our algorithm was applied to four different patients groups: no lung disease patients, patients diagnosed with SARS-CoV-2, patients with chronic obstructive pulmonary disease, and patients with paracoccidioidomycosis. The quantification results were compared with a semi-automatic algorithm previously validated. Results confirmed that the automatic approach has a good agreement with the semi-automatic. Bland-Altman (B&A) demonstrated a low dispersion when comparing total lung volume, and also when comparing each lung impairment individually. Linear regression adjustment achieved an R value of 0.81 when comparing total lung volume between both methods. Our approach provides a reliable quantification process for physicians, thus impairments measurements contributes to support prognostic decisions in important lung diseases including the infection of SARS-CoV-2.
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spelling Automatic algorithm for quantifying lung involvement in patients with chronic obstructive pulmonary disease, infection with SARS-CoV-2, paracoccidioidomycosis and no lung disease patientsIn this work, we aimed to develop an automatic algorithm for the quantification of total volume and lung impairments in four different diseases. The quantification was completely automatic based upon high resolution computed tomography exams. The algorithm was capable of measuring volume and differentiating pulmonary involvement including inflammatory process and fibrosis, emphysema, and ground-glass opacities. The algorithm classifies the percentage of each pulmonary involvement when compared to the entire lung volume. Our algorithm was applied to four different patients groups: no lung disease patients, patients diagnosed with SARS-CoV-2, patients with chronic obstructive pulmonary disease, and patients with paracoccidioidomycosis. The quantification results were compared with a semi-automatic algorithm previously validated. Results confirmed that the automatic approach has a good agreement with the semi-automatic. Bland-Altman (B&A) demonstrated a low dispersion when comparing total lung volume, and also when comparing each lung impairment individually. Linear regression adjustment achieved an R value of 0.81 when comparing total lung volume between both methods. Our approach provides a reliable quantification process for physicians, thus impairments measurements contributes to support prognostic decisions in important lung diseases including the infection of SARS-CoV-2.Botucatu Medical School Clinics Hospital Medical Physics and Radioprotection NucleusInstitute of Bioscience Sao Paulo State University Julio de Mesquita FilhoRadiology and Medical Imaging State University of CampinasMedical School Sao Paulo State University Julio de Mesquita FilhoBotucatu Medical School Clinics Hospital Medical Physics and Radioprotection NucleusInstitute of Bioscience Sao Paulo State University Julio de Mesquita FilhoMedical School Sao Paulo State University Julio de Mesquita FilhoUniversidade Estadual Paulista (UNESP)Universidade Estadual de Campinas (UNICAMP)Alves, Allan Felipe Fattori [UNESP]Miranda, José Ricardo Arruda [UNESP]Reis, FabianoOliveira, Abner Alves [UNESP]Souza, Sérgio Augusto Santana [UNESP]Fortaleza, Carlos Magno Castelo Branco [UNESP]Tanni, Suzana Erico [UNESP]Castro, José Thiago SouzaPina, Diana Rodrigues [UNESP]2022-04-29T08:29:34Z2022-04-29T08:29:34Z2021-06-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1371/journal.pone.0251783PLoS ONE, v. 16, n. 6 June, 2021.1932-6203http://hdl.handle.net/11449/22896010.1371/journal.pone.02517832-s2.0-85107673816Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPLoS ONEinfo:eu-repo/semantics/openAccess2022-04-29T08:29:34Zoai:repositorio.unesp.br:11449/228960Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462022-04-29T08:29:34Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Automatic algorithm for quantifying lung involvement in patients with chronic obstructive pulmonary disease, infection with SARS-CoV-2, paracoccidioidomycosis and no lung disease patients
title Automatic algorithm for quantifying lung involvement in patients with chronic obstructive pulmonary disease, infection with SARS-CoV-2, paracoccidioidomycosis and no lung disease patients
spellingShingle Automatic algorithm for quantifying lung involvement in patients with chronic obstructive pulmonary disease, infection with SARS-CoV-2, paracoccidioidomycosis and no lung disease patients
Alves, Allan Felipe Fattori [UNESP]
title_short Automatic algorithm for quantifying lung involvement in patients with chronic obstructive pulmonary disease, infection with SARS-CoV-2, paracoccidioidomycosis and no lung disease patients
title_full Automatic algorithm for quantifying lung involvement in patients with chronic obstructive pulmonary disease, infection with SARS-CoV-2, paracoccidioidomycosis and no lung disease patients
title_fullStr Automatic algorithm for quantifying lung involvement in patients with chronic obstructive pulmonary disease, infection with SARS-CoV-2, paracoccidioidomycosis and no lung disease patients
title_full_unstemmed Automatic algorithm for quantifying lung involvement in patients with chronic obstructive pulmonary disease, infection with SARS-CoV-2, paracoccidioidomycosis and no lung disease patients
title_sort Automatic algorithm for quantifying lung involvement in patients with chronic obstructive pulmonary disease, infection with SARS-CoV-2, paracoccidioidomycosis and no lung disease patients
author Alves, Allan Felipe Fattori [UNESP]
author_facet Alves, Allan Felipe Fattori [UNESP]
Miranda, José Ricardo Arruda [UNESP]
Reis, Fabiano
Oliveira, Abner Alves [UNESP]
Souza, Sérgio Augusto Santana [UNESP]
Fortaleza, Carlos Magno Castelo Branco [UNESP]
Tanni, Suzana Erico [UNESP]
Castro, José Thiago Souza
Pina, Diana Rodrigues [UNESP]
author_role author
author2 Miranda, José Ricardo Arruda [UNESP]
Reis, Fabiano
Oliveira, Abner Alves [UNESP]
Souza, Sérgio Augusto Santana [UNESP]
Fortaleza, Carlos Magno Castelo Branco [UNESP]
Tanni, Suzana Erico [UNESP]
Castro, José Thiago Souza
Pina, Diana Rodrigues [UNESP]
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Universidade Estadual de Campinas (UNICAMP)
dc.contributor.author.fl_str_mv Alves, Allan Felipe Fattori [UNESP]
Miranda, José Ricardo Arruda [UNESP]
Reis, Fabiano
Oliveira, Abner Alves [UNESP]
Souza, Sérgio Augusto Santana [UNESP]
Fortaleza, Carlos Magno Castelo Branco [UNESP]
Tanni, Suzana Erico [UNESP]
Castro, José Thiago Souza
Pina, Diana Rodrigues [UNESP]
description In this work, we aimed to develop an automatic algorithm for the quantification of total volume and lung impairments in four different diseases. The quantification was completely automatic based upon high resolution computed tomography exams. The algorithm was capable of measuring volume and differentiating pulmonary involvement including inflammatory process and fibrosis, emphysema, and ground-glass opacities. The algorithm classifies the percentage of each pulmonary involvement when compared to the entire lung volume. Our algorithm was applied to four different patients groups: no lung disease patients, patients diagnosed with SARS-CoV-2, patients with chronic obstructive pulmonary disease, and patients with paracoccidioidomycosis. The quantification results were compared with a semi-automatic algorithm previously validated. Results confirmed that the automatic approach has a good agreement with the semi-automatic. Bland-Altman (B&A) demonstrated a low dispersion when comparing total lung volume, and also when comparing each lung impairment individually. Linear regression adjustment achieved an R value of 0.81 when comparing total lung volume between both methods. Our approach provides a reliable quantification process for physicians, thus impairments measurements contributes to support prognostic decisions in important lung diseases including the infection of SARS-CoV-2.
publishDate 2021
dc.date.none.fl_str_mv 2021-06-01
2022-04-29T08:29:34Z
2022-04-29T08:29:34Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.pone.0251783
PLoS ONE, v. 16, n. 6 June, 2021.
1932-6203
http://hdl.handle.net/11449/228960
10.1371/journal.pone.0251783
2-s2.0-85107673816
url http://dx.doi.org/10.1371/journal.pone.0251783
http://hdl.handle.net/11449/228960
identifier_str_mv PLoS ONE, v. 16, n. 6 June, 2021.
1932-6203
10.1371/journal.pone.0251783
2-s2.0-85107673816
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv PLoS ONE
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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