Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1111/jzs.12513 http://hdl.handle.net/11449/222083 |
Resumo: | Neotropical catfishes of the family Pseudopimelodidae comprise 53 species allocated to seven genera widely distributed in South America from northwestern Colombia and Venezuela to Argentina and Uruguay. Intergeneric relationships based on morphology-based phylogenies are conflicting, and the interspecific relationships remain incipient. We conducted the first molecular phylogeny of the family by analyzing sequence data from ultraconserved elements (UCEs) of the genome for 33 specimens of Pseudopimelodidae and 19 related taxa. Phylogenetic relationships were accessed by concatenated matrices using Bayesian inference and, maximum likelihood, and the coalescent approach by a species tree analysis. The phylogeny with 868 UCE loci and 906,689 bp strongly support the monophyly of Pseudopimelodidae, and the arrangement of two major subclades herein classified as subfamilies Pseudopimelodinae and the newly proposed Batrochoglaninae. Pseudopimelodinae is composed by Cruciglanis sister to Pseudopimelodus and Rhyacoglanis, whereas the new subfamily Batrochoglaninae is composed by Cephalosilurus and Lophiosilurus as sister to Batrochoglanis and Microglanis. Pseudopimelodinae is supported by five morphological synapomorphies and Batrochoglaninae supported by three such synapomorphies. The results of this study will surely guide future research aiming to delimit and describe species within the monophyletic groups. |
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Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elementsbiodiversityfish evolutionNeotropical regionsystematicNeotropical catfishes of the family Pseudopimelodidae comprise 53 species allocated to seven genera widely distributed in South America from northwestern Colombia and Venezuela to Argentina and Uruguay. Intergeneric relationships based on morphology-based phylogenies are conflicting, and the interspecific relationships remain incipient. We conducted the first molecular phylogeny of the family by analyzing sequence data from ultraconserved elements (UCEs) of the genome for 33 specimens of Pseudopimelodidae and 19 related taxa. Phylogenetic relationships were accessed by concatenated matrices using Bayesian inference and, maximum likelihood, and the coalescent approach by a species tree analysis. The phylogeny with 868 UCE loci and 906,689 bp strongly support the monophyly of Pseudopimelodidae, and the arrangement of two major subclades herein classified as subfamilies Pseudopimelodinae and the newly proposed Batrochoglaninae. Pseudopimelodinae is composed by Cruciglanis sister to Pseudopimelodus and Rhyacoglanis, whereas the new subfamily Batrochoglaninae is composed by Cephalosilurus and Lophiosilurus as sister to Batrochoglanis and Microglanis. Pseudopimelodinae is supported by five morphological synapomorphies and Batrochoglaninae supported by three such synapomorphies. The results of this study will surely guide future research aiming to delimit and describe species within the monophyletic groups.Instituto de Biociências Universidade Estadual Paulista “Júlio de Mesquita Filho” (UNESP)Museu de Zoologia Universidade de São Paulo (USP)Museu de Zoologia Centro de Ciências Biológicas Universidade Estadual de Londrina (UEL)Department of Ichthyology Academy of Natural Sciences of Drexel UniversityInstituto de Biociências Universidade Estadual Paulista “Júlio de Mesquita Filho” (UNESP)Universidade Estadual Paulista (UNESP)Universidade de São Paulo (USP)Universidade Estadual de Londrina (UEL)Academy of Natural Sciences of Drexel UniversitySilva, Gabriel S. C. [UNESP]Melo, Bruno F. [UNESP]Roxo, Fábio F. [UNESP]Ochoa, Luz E.Shibatta, Oscar A.Sabaj, Mark H.Oliveira, Claudio [UNESP]2022-04-28T19:42:14Z2022-04-28T19:42:14Z2021-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1111/jzs.12513Journal of Zoological Systematics and Evolutionary Research.1439-04690947-5745http://hdl.handle.net/11449/22208310.1111/jzs.125132-s2.0-85111516993Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Zoological Systematics and Evolutionary Researchinfo:eu-repo/semantics/openAccess2022-04-28T19:42:14Zoai:repositorio.unesp.br:11449/222083Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462022-04-28T19:42:14Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements |
title |
Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements |
spellingShingle |
Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements Silva, Gabriel S. C. [UNESP] biodiversity fish evolution Neotropical region systematic |
title_short |
Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements |
title_full |
Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements |
title_fullStr |
Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements |
title_full_unstemmed |
Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements |
title_sort |
Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements |
author |
Silva, Gabriel S. C. [UNESP] |
author_facet |
Silva, Gabriel S. C. [UNESP] Melo, Bruno F. [UNESP] Roxo, Fábio F. [UNESP] Ochoa, Luz E. Shibatta, Oscar A. Sabaj, Mark H. Oliveira, Claudio [UNESP] |
author_role |
author |
author2 |
Melo, Bruno F. [UNESP] Roxo, Fábio F. [UNESP] Ochoa, Luz E. Shibatta, Oscar A. Sabaj, Mark H. Oliveira, Claudio [UNESP] |
author2_role |
author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (UNESP) Universidade de São Paulo (USP) Universidade Estadual de Londrina (UEL) Academy of Natural Sciences of Drexel University |
dc.contributor.author.fl_str_mv |
Silva, Gabriel S. C. [UNESP] Melo, Bruno F. [UNESP] Roxo, Fábio F. [UNESP] Ochoa, Luz E. Shibatta, Oscar A. Sabaj, Mark H. Oliveira, Claudio [UNESP] |
dc.subject.por.fl_str_mv |
biodiversity fish evolution Neotropical region systematic |
topic |
biodiversity fish evolution Neotropical region systematic |
description |
Neotropical catfishes of the family Pseudopimelodidae comprise 53 species allocated to seven genera widely distributed in South America from northwestern Colombia and Venezuela to Argentina and Uruguay. Intergeneric relationships based on morphology-based phylogenies are conflicting, and the interspecific relationships remain incipient. We conducted the first molecular phylogeny of the family by analyzing sequence data from ultraconserved elements (UCEs) of the genome for 33 specimens of Pseudopimelodidae and 19 related taxa. Phylogenetic relationships were accessed by concatenated matrices using Bayesian inference and, maximum likelihood, and the coalescent approach by a species tree analysis. The phylogeny with 868 UCE loci and 906,689 bp strongly support the monophyly of Pseudopimelodidae, and the arrangement of two major subclades herein classified as subfamilies Pseudopimelodinae and the newly proposed Batrochoglaninae. Pseudopimelodinae is composed by Cruciglanis sister to Pseudopimelodus and Rhyacoglanis, whereas the new subfamily Batrochoglaninae is composed by Cephalosilurus and Lophiosilurus as sister to Batrochoglanis and Microglanis. Pseudopimelodinae is supported by five morphological synapomorphies and Batrochoglaninae supported by three such synapomorphies. The results of this study will surely guide future research aiming to delimit and describe species within the monophyletic groups. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-01-01 2022-04-28T19:42:14Z 2022-04-28T19:42:14Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1111/jzs.12513 Journal of Zoological Systematics and Evolutionary Research. 1439-0469 0947-5745 http://hdl.handle.net/11449/222083 10.1111/jzs.12513 2-s2.0-85111516993 |
url |
http://dx.doi.org/10.1111/jzs.12513 http://hdl.handle.net/11449/222083 |
identifier_str_mv |
Journal of Zoological Systematics and Evolutionary Research. 1439-0469 0947-5745 10.1111/jzs.12513 2-s2.0-85111516993 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Journal of Zoological Systematics and Evolutionary Research |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1799965744042082304 |