Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements

Detalhes bibliográficos
Autor(a) principal: Silva, Gabriel S. C. [UNESP]
Data de Publicação: 2021
Outros Autores: Melo, Bruno F. [UNESP], Roxo, Fábio F. [UNESP], Ochoa, Luz E., Shibatta, Oscar A., Sabaj, Mark H., Oliveira, Claudio [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1111/jzs.12513
http://hdl.handle.net/11449/222083
Resumo: Neotropical catfishes of the family Pseudopimelodidae comprise 53 species allocated to seven genera widely distributed in South America from northwestern Colombia and Venezuela to Argentina and Uruguay. Intergeneric relationships based on morphology-based phylogenies are conflicting, and the interspecific relationships remain incipient. We conducted the first molecular phylogeny of the family by analyzing sequence data from ultraconserved elements (UCEs) of the genome for 33 specimens of Pseudopimelodidae and 19 related taxa. Phylogenetic relationships were accessed by concatenated matrices using Bayesian inference and, maximum likelihood, and the coalescent approach by a species tree analysis. The phylogeny with 868 UCE loci and 906,689 bp strongly support the monophyly of Pseudopimelodidae, and the arrangement of two major subclades herein classified as subfamilies Pseudopimelodinae and the newly proposed Batrochoglaninae. Pseudopimelodinae is composed by Cruciglanis sister to Pseudopimelodus and Rhyacoglanis, whereas the new subfamily Batrochoglaninae is composed by Cephalosilurus and Lophiosilurus as sister to Batrochoglanis and Microglanis. Pseudopimelodinae is supported by five morphological synapomorphies and Batrochoglaninae supported by three such synapomorphies. The results of this study will surely guide future research aiming to delimit and describe species within the monophyletic groups.
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spelling Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elementsbiodiversityfish evolutionNeotropical regionsystematicNeotropical catfishes of the family Pseudopimelodidae comprise 53 species allocated to seven genera widely distributed in South America from northwestern Colombia and Venezuela to Argentina and Uruguay. Intergeneric relationships based on morphology-based phylogenies are conflicting, and the interspecific relationships remain incipient. We conducted the first molecular phylogeny of the family by analyzing sequence data from ultraconserved elements (UCEs) of the genome for 33 specimens of Pseudopimelodidae and 19 related taxa. Phylogenetic relationships were accessed by concatenated matrices using Bayesian inference and, maximum likelihood, and the coalescent approach by a species tree analysis. The phylogeny with 868 UCE loci and 906,689 bp strongly support the monophyly of Pseudopimelodidae, and the arrangement of two major subclades herein classified as subfamilies Pseudopimelodinae and the newly proposed Batrochoglaninae. Pseudopimelodinae is composed by Cruciglanis sister to Pseudopimelodus and Rhyacoglanis, whereas the new subfamily Batrochoglaninae is composed by Cephalosilurus and Lophiosilurus as sister to Batrochoglanis and Microglanis. Pseudopimelodinae is supported by five morphological synapomorphies and Batrochoglaninae supported by three such synapomorphies. The results of this study will surely guide future research aiming to delimit and describe species within the monophyletic groups.Instituto de Biociências Universidade Estadual Paulista “Júlio de Mesquita Filho” (UNESP)Museu de Zoologia Universidade de São Paulo (USP)Museu de Zoologia Centro de Ciências Biológicas Universidade Estadual de Londrina (UEL)Department of Ichthyology Academy of Natural Sciences of Drexel UniversityInstituto de Biociências Universidade Estadual Paulista “Júlio de Mesquita Filho” (UNESP)Universidade Estadual Paulista (UNESP)Universidade de São Paulo (USP)Universidade Estadual de Londrina (UEL)Academy of Natural Sciences of Drexel UniversitySilva, Gabriel S. C. [UNESP]Melo, Bruno F. [UNESP]Roxo, Fábio F. [UNESP]Ochoa, Luz E.Shibatta, Oscar A.Sabaj, Mark H.Oliveira, Claudio [UNESP]2022-04-28T19:42:14Z2022-04-28T19:42:14Z2021-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1111/jzs.12513Journal of Zoological Systematics and Evolutionary Research.1439-04690947-5745http://hdl.handle.net/11449/22208310.1111/jzs.125132-s2.0-85111516993Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Zoological Systematics and Evolutionary Researchinfo:eu-repo/semantics/openAccess2022-04-28T19:42:14Zoai:repositorio.unesp.br:11449/222083Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462022-04-28T19:42:14Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements
title Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements
spellingShingle Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements
Silva, Gabriel S. C. [UNESP]
biodiversity
fish evolution
Neotropical region
systematic
title_short Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements
title_full Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements
title_fullStr Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements
title_full_unstemmed Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements
title_sort Phylogenomics of the bumblebee catfishes (Siluriformes: Pseudopimelodidae) using ultraconserved elements
author Silva, Gabriel S. C. [UNESP]
author_facet Silva, Gabriel S. C. [UNESP]
Melo, Bruno F. [UNESP]
Roxo, Fábio F. [UNESP]
Ochoa, Luz E.
Shibatta, Oscar A.
Sabaj, Mark H.
Oliveira, Claudio [UNESP]
author_role author
author2 Melo, Bruno F. [UNESP]
Roxo, Fábio F. [UNESP]
Ochoa, Luz E.
Shibatta, Oscar A.
Sabaj, Mark H.
Oliveira, Claudio [UNESP]
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Universidade de São Paulo (USP)
Universidade Estadual de Londrina (UEL)
Academy of Natural Sciences of Drexel University
dc.contributor.author.fl_str_mv Silva, Gabriel S. C. [UNESP]
Melo, Bruno F. [UNESP]
Roxo, Fábio F. [UNESP]
Ochoa, Luz E.
Shibatta, Oscar A.
Sabaj, Mark H.
Oliveira, Claudio [UNESP]
dc.subject.por.fl_str_mv biodiversity
fish evolution
Neotropical region
systematic
topic biodiversity
fish evolution
Neotropical region
systematic
description Neotropical catfishes of the family Pseudopimelodidae comprise 53 species allocated to seven genera widely distributed in South America from northwestern Colombia and Venezuela to Argentina and Uruguay. Intergeneric relationships based on morphology-based phylogenies are conflicting, and the interspecific relationships remain incipient. We conducted the first molecular phylogeny of the family by analyzing sequence data from ultraconserved elements (UCEs) of the genome for 33 specimens of Pseudopimelodidae and 19 related taxa. Phylogenetic relationships were accessed by concatenated matrices using Bayesian inference and, maximum likelihood, and the coalescent approach by a species tree analysis. The phylogeny with 868 UCE loci and 906,689 bp strongly support the monophyly of Pseudopimelodidae, and the arrangement of two major subclades herein classified as subfamilies Pseudopimelodinae and the newly proposed Batrochoglaninae. Pseudopimelodinae is composed by Cruciglanis sister to Pseudopimelodus and Rhyacoglanis, whereas the new subfamily Batrochoglaninae is composed by Cephalosilurus and Lophiosilurus as sister to Batrochoglanis and Microglanis. Pseudopimelodinae is supported by five morphological synapomorphies and Batrochoglaninae supported by three such synapomorphies. The results of this study will surely guide future research aiming to delimit and describe species within the monophyletic groups.
publishDate 2021
dc.date.none.fl_str_mv 2021-01-01
2022-04-28T19:42:14Z
2022-04-28T19:42:14Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1111/jzs.12513
Journal of Zoological Systematics and Evolutionary Research.
1439-0469
0947-5745
http://hdl.handle.net/11449/222083
10.1111/jzs.12513
2-s2.0-85111516993
url http://dx.doi.org/10.1111/jzs.12513
http://hdl.handle.net/11449/222083
identifier_str_mv Journal of Zoological Systematics and Evolutionary Research.
1439-0469
0947-5745
10.1111/jzs.12513
2-s2.0-85111516993
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Journal of Zoological Systematics and Evolutionary Research
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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