Cryptic Genetic Diversity Is Paramount in Small-Bodied Amphibians of the Genus Euparkerella (Anura: Craugastoridae) Endemic to the Brazilian Atlantic Forest

Detalhes bibliográficos
Autor(a) principal: Fusinatto, Luciana A.
Data de Publicação: 2013
Outros Autores: Alexandrino, Joao [UNESP], Haddad, Celio F. B. [UNESP], Brunes, Tuliana O., Rocha, Carlos F. D., Sequeira, Fernando
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1371/journal.pone.0079504
http://hdl.handle.net/11449/111523
Resumo: Morphological similarity associated to restricted distributions and low dispersal abilities make the direct developing Terrarana frogs of the genus Euparkerella a good model for examining diversification processes. We here infer phylogenetic relationships within the genus Euparkerella, using DNA sequence data from one mitochondrial and four nuclear genes coupled with traditional Bayesian phylogenetic reconstruction approaches and more recent coalescent methods of species tree inference. We also used Bayesian clustering analysis and a recent Bayesian coalescent-based approach specifically to infer species delimitation. The analysis of 39 individuals from the four known Euparkerella species uncovered high levels of genetic diversity, especially within the two previously morphologically-defined E. cochranae and E. brasiliensis. Within these species, the gene trees at five independent loci and trees from combined data (concatenated dataset and the species tree) uncovered six deeply diverged and geographically coherent evolutionary units, which may have diverged between the Miocene and the Pleistocene. These six units were also uncovered in the Bayesian clustering analysis, and supported by the Bayesian coalescent-based species delimitation (BPP), and Genealogical Sorting Index (GSI), providing thus strong evidence for underestimation of the current levels of diversity within Euparkerella. The cryptic diversity now uncovered opens new opportunities to examine the origins and maintenance of microendemism in the context of spatial heterogeneity and/or human induced fragmentation of the highly threatened Brazilian Atlantic forest hotspot.
id UNSP_aabe92b93a1e66837539fd3c385dc3cd
oai_identifier_str oai:repositorio.unesp.br:11449/111523
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling Cryptic Genetic Diversity Is Paramount in Small-Bodied Amphibians of the Genus Euparkerella (Anura: Craugastoridae) Endemic to the Brazilian Atlantic ForestMorphological similarity associated to restricted distributions and low dispersal abilities make the direct developing Terrarana frogs of the genus Euparkerella a good model for examining diversification processes. We here infer phylogenetic relationships within the genus Euparkerella, using DNA sequence data from one mitochondrial and four nuclear genes coupled with traditional Bayesian phylogenetic reconstruction approaches and more recent coalescent methods of species tree inference. We also used Bayesian clustering analysis and a recent Bayesian coalescent-based approach specifically to infer species delimitation. The analysis of 39 individuals from the four known Euparkerella species uncovered high levels of genetic diversity, especially within the two previously morphologically-defined E. cochranae and E. brasiliensis. Within these species, the gene trees at five independent loci and trees from combined data (concatenated dataset and the species tree) uncovered six deeply diverged and geographically coherent evolutionary units, which may have diverged between the Miocene and the Pleistocene. These six units were also uncovered in the Bayesian clustering analysis, and supported by the Bayesian coalescent-based species delimitation (BPP), and Genealogical Sorting Index (GSI), providing thus strong evidence for underestimation of the current levels of diversity within Euparkerella. The cryptic diversity now uncovered opens new opportunities to examine the origins and maintenance of microendemism in the context of spatial heterogeneity and/or human induced fragmentation of the highly threatened Brazilian Atlantic forest hotspot.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Productivity in Research grantFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)CFBHFundação de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ)Fundacao Para a Ciencia e a Tecnologia (FCT)Univ Estado Rio de Janeiro, Inst Biol Roberto Alcantara Gomes, Dept Ecol, BR-20550011 Rio De Janeiro, BrazilUNIFESP Univ Fed Sao Paulo, Dept Ciencias Biol, Sao Paulo, BrazilUniv Estadual Paulista, Inst Biociencias, Dept Zool, Sao Paulo, BrazilUniv Porto, Ctr Invest Biodiversidade & Recursos Genet, CIBIO UP, Vairao, PortugalUniv Porto, Fac Ciencias, Dept Biol, P-4100 Oporto, PortugalUniv Estadual Paulista, Inst Biociencias, Dept Zool, Sao Paulo, BrazilCAPES: 0378/11-9CNPq: 142823/2009-0FAPESP: 05/52727-5FAPESP: 06/56938-3CFBH2008/50928-1FAPERJ: E-26/102.404765-2012Fundacao Para a Ciencia e a Tecnologia (FCT)SFRH/BPD/87721/2012304791/2010-5472287/2012-5Public Library ScienceUniversidade do Estado do Rio de Janeiro (UERJ)Universidade Federal de São Paulo (UNIFESP)Universidade Estadual Paulista (Unesp)Univ PortoFusinatto, Luciana A.Alexandrino, Joao [UNESP]Haddad, Celio F. B. [UNESP]Brunes, Tuliana O.Rocha, Carlos F. D.Sequeira, Fernando2014-12-03T13:08:44Z2014-12-03T13:08:44Z2013-11-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article12application/pdfhttp://dx.doi.org/10.1371/journal.pone.0079504Plos One. San Francisco: Public Library Science, v. 8, n. 11, 12 p., 2013.1932-6203http://hdl.handle.net/11449/11152310.1371/journal.pone.0079504WOS:000326499300087WOS000326499300087.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPLOS ONE2.7661,164info:eu-repo/semantics/openAccess2023-10-15T06:03:23Zoai:repositorio.unesp.br:11449/111523Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-10-15T06:03:23Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Cryptic Genetic Diversity Is Paramount in Small-Bodied Amphibians of the Genus Euparkerella (Anura: Craugastoridae) Endemic to the Brazilian Atlantic Forest
title Cryptic Genetic Diversity Is Paramount in Small-Bodied Amphibians of the Genus Euparkerella (Anura: Craugastoridae) Endemic to the Brazilian Atlantic Forest
spellingShingle Cryptic Genetic Diversity Is Paramount in Small-Bodied Amphibians of the Genus Euparkerella (Anura: Craugastoridae) Endemic to the Brazilian Atlantic Forest
Fusinatto, Luciana A.
title_short Cryptic Genetic Diversity Is Paramount in Small-Bodied Amphibians of the Genus Euparkerella (Anura: Craugastoridae) Endemic to the Brazilian Atlantic Forest
title_full Cryptic Genetic Diversity Is Paramount in Small-Bodied Amphibians of the Genus Euparkerella (Anura: Craugastoridae) Endemic to the Brazilian Atlantic Forest
title_fullStr Cryptic Genetic Diversity Is Paramount in Small-Bodied Amphibians of the Genus Euparkerella (Anura: Craugastoridae) Endemic to the Brazilian Atlantic Forest
title_full_unstemmed Cryptic Genetic Diversity Is Paramount in Small-Bodied Amphibians of the Genus Euparkerella (Anura: Craugastoridae) Endemic to the Brazilian Atlantic Forest
title_sort Cryptic Genetic Diversity Is Paramount in Small-Bodied Amphibians of the Genus Euparkerella (Anura: Craugastoridae) Endemic to the Brazilian Atlantic Forest
author Fusinatto, Luciana A.
author_facet Fusinatto, Luciana A.
Alexandrino, Joao [UNESP]
Haddad, Celio F. B. [UNESP]
Brunes, Tuliana O.
Rocha, Carlos F. D.
Sequeira, Fernando
author_role author
author2 Alexandrino, Joao [UNESP]
Haddad, Celio F. B. [UNESP]
Brunes, Tuliana O.
Rocha, Carlos F. D.
Sequeira, Fernando
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Estado do Rio de Janeiro (UERJ)
Universidade Federal de São Paulo (UNIFESP)
Universidade Estadual Paulista (Unesp)
Univ Porto
dc.contributor.author.fl_str_mv Fusinatto, Luciana A.
Alexandrino, Joao [UNESP]
Haddad, Celio F. B. [UNESP]
Brunes, Tuliana O.
Rocha, Carlos F. D.
Sequeira, Fernando
description Morphological similarity associated to restricted distributions and low dispersal abilities make the direct developing Terrarana frogs of the genus Euparkerella a good model for examining diversification processes. We here infer phylogenetic relationships within the genus Euparkerella, using DNA sequence data from one mitochondrial and four nuclear genes coupled with traditional Bayesian phylogenetic reconstruction approaches and more recent coalescent methods of species tree inference. We also used Bayesian clustering analysis and a recent Bayesian coalescent-based approach specifically to infer species delimitation. The analysis of 39 individuals from the four known Euparkerella species uncovered high levels of genetic diversity, especially within the two previously morphologically-defined E. cochranae and E. brasiliensis. Within these species, the gene trees at five independent loci and trees from combined data (concatenated dataset and the species tree) uncovered six deeply diverged and geographically coherent evolutionary units, which may have diverged between the Miocene and the Pleistocene. These six units were also uncovered in the Bayesian clustering analysis, and supported by the Bayesian coalescent-based species delimitation (BPP), and Genealogical Sorting Index (GSI), providing thus strong evidence for underestimation of the current levels of diversity within Euparkerella. The cryptic diversity now uncovered opens new opportunities to examine the origins and maintenance of microendemism in the context of spatial heterogeneity and/or human induced fragmentation of the highly threatened Brazilian Atlantic forest hotspot.
publishDate 2013
dc.date.none.fl_str_mv 2013-11-01
2014-12-03T13:08:44Z
2014-12-03T13:08:44Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.pone.0079504
Plos One. San Francisco: Public Library Science, v. 8, n. 11, 12 p., 2013.
1932-6203
http://hdl.handle.net/11449/111523
10.1371/journal.pone.0079504
WOS:000326499300087
WOS000326499300087.pdf
url http://dx.doi.org/10.1371/journal.pone.0079504
http://hdl.handle.net/11449/111523
identifier_str_mv Plos One. San Francisco: Public Library Science, v. 8, n. 11, 12 p., 2013.
1932-6203
10.1371/journal.pone.0079504
WOS:000326499300087
WOS000326499300087.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv PLOS ONE
2.766
1,164
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 12
application/pdf
dc.publisher.none.fl_str_mv Public Library Science
publisher.none.fl_str_mv Public Library Science
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1799964565971140608