The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization

Detalhes bibliográficos
Autor(a) principal: Bueno, Danilo [UNESP]
Data de Publicação: 2016
Outros Autores: Palacios-Gimenez, Octavio Manuel [UNESP], Martí, Dardo Andrea, Mariguela, Tatiane Casagrande [UNESP], Cabral-de-Mello, Diogo Cavalcanti [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1007/s00438-016-1204-1
http://hdl.handle.net/11449/168591
Resumo: The 5S ribosomal DNA (rDNA) sequences are subject of dynamic evolution at chromosomal and molecular levels, evolving through concerted and/or birth-and-death fashion. Among grasshoppers, the chromosomal location for this sequence was established for some species, but little molecular information was obtained to infer evolutionary patterns. Here, we integrated data from chromosomal and nucleotide sequence analysis for 5S rDNA in two Abracris species aiming to identify evolutionary dynamics. For both species, two arrays were identified, a larger sequence (named type-I) that consisted of the entire 5S rDNA gene plus NTS (non-transcribed spacer) and a smaller (named type-II) with truncated 5S rDNA gene plus short NTS that was considered a pseudogene. For type-I sequences, the gene corresponding region contained the internal control region and poly-T motif and the NTS presented partial transposable elements. Between the species, nucleotide differences for type-I were noticed, while type-II was identical, suggesting pseudogenization in a common ancestor. At chromosomal point to view, the type-II was placed in one bivalent, while type-I occurred in multiple copies in distinct chromosomes. In Abracris, the evolution of 5S rDNA was apparently influenced by the chromosomal distribution of clusters (single or multiple location), resulting in a mixed mechanism integrating concerted and birth-and-death evolution depending on the unit.
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spelling The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organizationFISHGenomeMultigene familyNon-transcribed spacerRepetitive DNAsThe 5S ribosomal DNA (rDNA) sequences are subject of dynamic evolution at chromosomal and molecular levels, evolving through concerted and/or birth-and-death fashion. Among grasshoppers, the chromosomal location for this sequence was established for some species, but little molecular information was obtained to infer evolutionary patterns. Here, we integrated data from chromosomal and nucleotide sequence analysis for 5S rDNA in two Abracris species aiming to identify evolutionary dynamics. For both species, two arrays were identified, a larger sequence (named type-I) that consisted of the entire 5S rDNA gene plus NTS (non-transcribed spacer) and a smaller (named type-II) with truncated 5S rDNA gene plus short NTS that was considered a pseudogene. For type-I sequences, the gene corresponding region contained the internal control region and poly-T motif and the NTS presented partial transposable elements. Between the species, nucleotide differences for type-I were noticed, while type-II was identical, suggesting pseudogenization in a common ancestor. At chromosomal point to view, the type-II was placed in one bivalent, while type-I occurred in multiple copies in distinct chromosomes. In Abracris, the evolution of 5S rDNA was apparently influenced by the chromosomal distribution of clusters (single or multiple location), resulting in a mixed mechanism integrating concerted and birth-and-death evolution depending on the unit.Departamento de Biologia Instituto de Biociências/IB UNESP Univ Estadual PaulistaLaboratorio de Genética Evolutiva IBS Facultad de Ciencias Exactas Químicas y Naturales CONICET Universidad Nacional de MisionesDepartamento de Zoologia Instituto de Biociências/IB UNESP Univ Estadual PaulistaDepartamento de Biologia Instituto de Biociências/IB UNESP Univ Estadual PaulistaDepartamento de Zoologia Instituto de Biociências/IB UNESP Univ Estadual PaulistaUniversidade Estadual Paulista (Unesp)Universidad Nacional de MisionesBueno, Danilo [UNESP]Palacios-Gimenez, Octavio Manuel [UNESP]Martí, Dardo AndreaMariguela, Tatiane Casagrande [UNESP]Cabral-de-Mello, Diogo Cavalcanti [UNESP]2018-12-11T16:42:04Z2018-12-11T16:42:04Z2016-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1607-1613application/pdfhttp://dx.doi.org/10.1007/s00438-016-1204-1Molecular Genetics and Genomics, v. 291, n. 4, p. 1607-1613, 2016.1617-46231617-4615http://hdl.handle.net/11449/16859110.1007/s00438-016-1204-12-s2.0-849641941502-s2.0-84964194150.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMolecular Genetics and Genomics1,1681,168info:eu-repo/semantics/openAccess2024-01-24T06:29:15Zoai:repositorio.unesp.br:11449/168591Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-01-24T06:29:15Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization
title The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization
spellingShingle The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization
Bueno, Danilo [UNESP]
FISH
Genome
Multigene family
Non-transcribed spacer
Repetitive DNAs
title_short The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization
title_full The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization
title_fullStr The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization
title_full_unstemmed The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization
title_sort The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization
author Bueno, Danilo [UNESP]
author_facet Bueno, Danilo [UNESP]
Palacios-Gimenez, Octavio Manuel [UNESP]
Martí, Dardo Andrea
Mariguela, Tatiane Casagrande [UNESP]
Cabral-de-Mello, Diogo Cavalcanti [UNESP]
author_role author
author2 Palacios-Gimenez, Octavio Manuel [UNESP]
Martí, Dardo Andrea
Mariguela, Tatiane Casagrande [UNESP]
Cabral-de-Mello, Diogo Cavalcanti [UNESP]
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Universidad Nacional de Misiones
dc.contributor.author.fl_str_mv Bueno, Danilo [UNESP]
Palacios-Gimenez, Octavio Manuel [UNESP]
Martí, Dardo Andrea
Mariguela, Tatiane Casagrande [UNESP]
Cabral-de-Mello, Diogo Cavalcanti [UNESP]
dc.subject.por.fl_str_mv FISH
Genome
Multigene family
Non-transcribed spacer
Repetitive DNAs
topic FISH
Genome
Multigene family
Non-transcribed spacer
Repetitive DNAs
description The 5S ribosomal DNA (rDNA) sequences are subject of dynamic evolution at chromosomal and molecular levels, evolving through concerted and/or birth-and-death fashion. Among grasshoppers, the chromosomal location for this sequence was established for some species, but little molecular information was obtained to infer evolutionary patterns. Here, we integrated data from chromosomal and nucleotide sequence analysis for 5S rDNA in two Abracris species aiming to identify evolutionary dynamics. For both species, two arrays were identified, a larger sequence (named type-I) that consisted of the entire 5S rDNA gene plus NTS (non-transcribed spacer) and a smaller (named type-II) with truncated 5S rDNA gene plus short NTS that was considered a pseudogene. For type-I sequences, the gene corresponding region contained the internal control region and poly-T motif and the NTS presented partial transposable elements. Between the species, nucleotide differences for type-I were noticed, while type-II was identical, suggesting pseudogenization in a common ancestor. At chromosomal point to view, the type-II was placed in one bivalent, while type-I occurred in multiple copies in distinct chromosomes. In Abracris, the evolution of 5S rDNA was apparently influenced by the chromosomal distribution of clusters (single or multiple location), resulting in a mixed mechanism integrating concerted and birth-and-death evolution depending on the unit.
publishDate 2016
dc.date.none.fl_str_mv 2016-08-01
2018-12-11T16:42:04Z
2018-12-11T16:42:04Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1007/s00438-016-1204-1
Molecular Genetics and Genomics, v. 291, n. 4, p. 1607-1613, 2016.
1617-4623
1617-4615
http://hdl.handle.net/11449/168591
10.1007/s00438-016-1204-1
2-s2.0-84964194150
2-s2.0-84964194150.pdf
url http://dx.doi.org/10.1007/s00438-016-1204-1
http://hdl.handle.net/11449/168591
identifier_str_mv Molecular Genetics and Genomics, v. 291, n. 4, p. 1607-1613, 2016.
1617-4623
1617-4615
10.1007/s00438-016-1204-1
2-s2.0-84964194150
2-s2.0-84964194150.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Molecular Genetics and Genomics
1,168
1,168
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1607-1613
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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