Tricarboxylic acid cycle metabolites as mediators of dna methylation reprogramming in bovine preimplantation embryos

Detalhes bibliográficos
Autor(a) principal: Ispada, Jessica
Data de Publicação: 2020
Outros Autores: da Fonseca Junior, Aldcejam Martins, de Lima, Camila Bruna, Dos Santos, Erika Cristina, Fontes, Patricia Kubo [UNESP], Nogueira, Marcelo Fábio Gouveia [UNESP], da Silva, Vinicius Lourenço, Almeida, Fernanda Nascimento, Leite, Saul de Castro, Chitwood, James Lee, Ross, Pablo Juan, Milazzotto, Marcella Pecora
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3390/ijms21186868
http://hdl.handle.net/11449/206516
Resumo: In many cell types, epigenetic changes are partially regulated by the availability of metabolites involved in the activity of chromatin-modifying enzymes. Even so, the association between metabolism and the typical epigenetic reprogramming that occurs during preimplantation embryo development remains poorly understood. In this work, we explore the link between energy metabolism, more specifically the tricarboxylic acid cycle (TCA), and epigenetic regulation in bovine preimplantation embryos. Using a morphokinetics model of embryonic development (fast-and slow-developing embryos), we show that DNA methylation (5mC) and hydroxymethylation (5hmC) are dynamically regulated and altered by the speed of the first cleavages. More specifically, slow-developing embryos fail to perform the typical reprogramming that is necessary to ensure the generation of blastocysts with higher ability to establish specific cell lineages. Transcriptome analysis revealed that such differences were mainly associated with enzymes involved in the TCA cycle rather than specific writers/erasers of DNA methylation marks. This relationship was later confirmed by disturbing the embryonic metabolism through changes in α-ketoglutarate or succinate availability in culture media. This was sufficient to interfere with the DNA methylation dynamics despite the fact that blastocyst rates and total cell number were not quite affected. These results provide the first evidence of a relationship between epigenetic reprogramming and energy metabolism in bovine embryos. Likewise, levels of metabolites in culture media may be crucial for precise epigenetic reprogramming, with possible further consequences in the molecular control and differentiation of cells.
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spelling Tricarboxylic acid cycle metabolites as mediators of dna methylation reprogramming in bovine preimplantation embryosBovineDNA methylationEmbryoEpigeneticMetabolismIn many cell types, epigenetic changes are partially regulated by the availability of metabolites involved in the activity of chromatin-modifying enzymes. Even so, the association between metabolism and the typical epigenetic reprogramming that occurs during preimplantation embryo development remains poorly understood. In this work, we explore the link between energy metabolism, more specifically the tricarboxylic acid cycle (TCA), and epigenetic regulation in bovine preimplantation embryos. Using a morphokinetics model of embryonic development (fast-and slow-developing embryos), we show that DNA methylation (5mC) and hydroxymethylation (5hmC) are dynamically regulated and altered by the speed of the first cleavages. More specifically, slow-developing embryos fail to perform the typical reprogramming that is necessary to ensure the generation of blastocysts with higher ability to establish specific cell lineages. Transcriptome analysis revealed that such differences were mainly associated with enzymes involved in the TCA cycle rather than specific writers/erasers of DNA methylation marks. This relationship was later confirmed by disturbing the embryonic metabolism through changes in α-ketoglutarate or succinate availability in culture media. This was sufficient to interfere with the DNA methylation dynamics despite the fact that blastocyst rates and total cell number were not quite affected. These results provide the first evidence of a relationship between epigenetic reprogramming and energy metabolism in bovine embryos. Likewise, levels of metabolites in culture media may be crucial for precise epigenetic reprogramming, with possible further consequences in the molecular control and differentiation of cells.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Laboratory of Embryonic Metabolism and Epigenetics Center of Natural and Human Sciences Federal University of ABCInstitute of Biomedical Sciences University of Sao PauloCentre de Recherche en Reproduction Développement et Santé Intergénérationnelle (CRDSI) Département des Sciences Animales Faculté des Sciences de l’Agriculture et de l’Alimentation Université LavalLaboratory of Phytomedicines Pharmacology and Biotechnology Department of Pharmacology Institute of Biosciences São Paulo State University (Unesp), Campus of BotucatuDepartment of Biological Sciences School of Sciences and Languages São Paulo State University (Unesp), Campus of AssisBioinformatics and Health Informatics Group Center for Engineering Modeling and Applied Social Sciences Universidade Federal do ABCCenter for Mathematics Computation and Cognition Universidade Federal do ABCDepartment of Animal Science University of California DavisLaboratory of Phytomedicines Pharmacology and Biotechnology Department of Pharmacology Institute of Biosciences São Paulo State University (Unesp), Campus of BotucatuDepartment of Biological Sciences School of Sciences and Languages São Paulo State University (Unesp), Campus of AssisFAPESP: 2012/50533-2FAPESP: 2015/03381-0FAPESP: 2017/18384-0FAPESP: 2018/11668-6Federal University of ABCUniversidade de São Paulo (USP)Université LavalUniversidade Estadual Paulista (Unesp)Universidade Federal do ABC (UFABC)University of California DavisIspada, Jessicada Fonseca Junior, Aldcejam Martinsde Lima, Camila BrunaDos Santos, Erika CristinaFontes, Patricia Kubo [UNESP]Nogueira, Marcelo Fábio Gouveia [UNESP]da Silva, Vinicius LourençoAlmeida, Fernanda NascimentoLeite, Saul de CastroChitwood, James LeeRoss, Pablo JuanMilazzotto, Marcella Pecora2021-06-25T10:33:34Z2021-06-25T10:33:34Z2020-09-02info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1-16http://dx.doi.org/10.3390/ijms21186868International Journal of Molecular Sciences, v. 21, n. 18, p. 1-16, 2020.1422-00671661-6596http://hdl.handle.net/11449/20651610.3390/ijms211868682-s2.0-85091078505Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengInternational Journal of Molecular Sciencesinfo:eu-repo/semantics/openAccess2021-10-23T07:07:30Zoai:repositorio.unesp.br:11449/206516Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T07:07:30Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Tricarboxylic acid cycle metabolites as mediators of dna methylation reprogramming in bovine preimplantation embryos
title Tricarboxylic acid cycle metabolites as mediators of dna methylation reprogramming in bovine preimplantation embryos
spellingShingle Tricarboxylic acid cycle metabolites as mediators of dna methylation reprogramming in bovine preimplantation embryos
Ispada, Jessica
Bovine
DNA methylation
Embryo
Epigenetic
Metabolism
title_short Tricarboxylic acid cycle metabolites as mediators of dna methylation reprogramming in bovine preimplantation embryos
title_full Tricarboxylic acid cycle metabolites as mediators of dna methylation reprogramming in bovine preimplantation embryos
title_fullStr Tricarboxylic acid cycle metabolites as mediators of dna methylation reprogramming in bovine preimplantation embryos
title_full_unstemmed Tricarboxylic acid cycle metabolites as mediators of dna methylation reprogramming in bovine preimplantation embryos
title_sort Tricarboxylic acid cycle metabolites as mediators of dna methylation reprogramming in bovine preimplantation embryos
author Ispada, Jessica
author_facet Ispada, Jessica
da Fonseca Junior, Aldcejam Martins
de Lima, Camila Bruna
Dos Santos, Erika Cristina
Fontes, Patricia Kubo [UNESP]
Nogueira, Marcelo Fábio Gouveia [UNESP]
da Silva, Vinicius Lourenço
Almeida, Fernanda Nascimento
Leite, Saul de Castro
Chitwood, James Lee
Ross, Pablo Juan
Milazzotto, Marcella Pecora
author_role author
author2 da Fonseca Junior, Aldcejam Martins
de Lima, Camila Bruna
Dos Santos, Erika Cristina
Fontes, Patricia Kubo [UNESP]
Nogueira, Marcelo Fábio Gouveia [UNESP]
da Silva, Vinicius Lourenço
Almeida, Fernanda Nascimento
Leite, Saul de Castro
Chitwood, James Lee
Ross, Pablo Juan
Milazzotto, Marcella Pecora
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Federal University of ABC
Universidade de São Paulo (USP)
Université Laval
Universidade Estadual Paulista (Unesp)
Universidade Federal do ABC (UFABC)
University of California Davis
dc.contributor.author.fl_str_mv Ispada, Jessica
da Fonseca Junior, Aldcejam Martins
de Lima, Camila Bruna
Dos Santos, Erika Cristina
Fontes, Patricia Kubo [UNESP]
Nogueira, Marcelo Fábio Gouveia [UNESP]
da Silva, Vinicius Lourenço
Almeida, Fernanda Nascimento
Leite, Saul de Castro
Chitwood, James Lee
Ross, Pablo Juan
Milazzotto, Marcella Pecora
dc.subject.por.fl_str_mv Bovine
DNA methylation
Embryo
Epigenetic
Metabolism
topic Bovine
DNA methylation
Embryo
Epigenetic
Metabolism
description In many cell types, epigenetic changes are partially regulated by the availability of metabolites involved in the activity of chromatin-modifying enzymes. Even so, the association between metabolism and the typical epigenetic reprogramming that occurs during preimplantation embryo development remains poorly understood. In this work, we explore the link between energy metabolism, more specifically the tricarboxylic acid cycle (TCA), and epigenetic regulation in bovine preimplantation embryos. Using a morphokinetics model of embryonic development (fast-and slow-developing embryos), we show that DNA methylation (5mC) and hydroxymethylation (5hmC) are dynamically regulated and altered by the speed of the first cleavages. More specifically, slow-developing embryos fail to perform the typical reprogramming that is necessary to ensure the generation of blastocysts with higher ability to establish specific cell lineages. Transcriptome analysis revealed that such differences were mainly associated with enzymes involved in the TCA cycle rather than specific writers/erasers of DNA methylation marks. This relationship was later confirmed by disturbing the embryonic metabolism through changes in α-ketoglutarate or succinate availability in culture media. This was sufficient to interfere with the DNA methylation dynamics despite the fact that blastocyst rates and total cell number were not quite affected. These results provide the first evidence of a relationship between epigenetic reprogramming and energy metabolism in bovine embryos. Likewise, levels of metabolites in culture media may be crucial for precise epigenetic reprogramming, with possible further consequences in the molecular control and differentiation of cells.
publishDate 2020
dc.date.none.fl_str_mv 2020-09-02
2021-06-25T10:33:34Z
2021-06-25T10:33:34Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3390/ijms21186868
International Journal of Molecular Sciences, v. 21, n. 18, p. 1-16, 2020.
1422-0067
1661-6596
http://hdl.handle.net/11449/206516
10.3390/ijms21186868
2-s2.0-85091078505
url http://dx.doi.org/10.3390/ijms21186868
http://hdl.handle.net/11449/206516
identifier_str_mv International Journal of Molecular Sciences, v. 21, n. 18, p. 1-16, 2020.
1422-0067
1661-6596
10.3390/ijms21186868
2-s2.0-85091078505
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv International Journal of Molecular Sciences
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1-16
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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