Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil

Detalhes bibliográficos
Autor(a) principal: Martins, Renan Moura [UNESP]
Data de Publicação: 2022
Outros Autores: Carvalho, Tamara [UNESP], Bittar, Cintia [UNESP], Quevedo, Daniela Muller, Miceli, Rafael Nava, Nogueira, Mauricio Lacerda, Ferreira, Helena Lage, Costa, Paulo Inácio [UNESP], Araújo, João Pessoa [UNESP], Spilki, Fernando Rosado, Rahal, Paula [UNESP], Calmon, Marilia Freitas [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3390/v14112333
http://hdl.handle.net/11449/247862
Resumo: Wastewater-based epidemiology (WBE) is a tool involving the analysis of wastewater for chemicals and pathogens at the community level. WBE has been shown to be an effective surveillance system for SARS-CoV-2, providing an early-warning-detection system for disease prevalence in the community via the detection of genetic materials in the wastewater. In numerous nation-states, studies have indicated the presence of SARS-CoV-2 in wastewater. Herein, we report the primary time-course monitoring of SARS-CoV-2 RNA in wastewater samples in São José do Rio Preto-SP/Brazil in order to explain the dynamics of the presence of SARS-CoV-2 RNA during one year of the SARS-CoV-2 pandemic and analyze possible relationships with other environmental parameters. We performed RNA quantification of SARS-CoV-2 by RT-qPCR using N1 and N2 targets. The proportion of positive samples for every target resulted in 100% and 96.6% for N1 and N2, respectively. A mean lag of -5 days is observed between the wastewater signal and the new SARS-CoV-2-positive cases reported. A correlation was found between the air and wastewater temperatures and therefore between the SARS-CoV-2 viral titers for N1 and N2 targets. We also observed a correlation between SARS-CoV-2 viral titers and media wastewater flow for the N1 target. In addition, we observed higher viral genome copies within the wastewater samples collected on non-rainy days for the N1 target. Thus, we propose that, based on our results, monitoring raw wastewater may be a broadly applicable strategy that might contribute to resolving the pressing problem of insufficient diagnostic testing; it may represent an inexpensive and early-warning method for future COVID-19 outbreaks, mainly in lower- and middle-income countries.
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spelling Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in BrazilepidemiologyqRT-PCRSARS-CoV-2wastewaterWastewater-based epidemiology (WBE) is a tool involving the analysis of wastewater for chemicals and pathogens at the community level. WBE has been shown to be an effective surveillance system for SARS-CoV-2, providing an early-warning-detection system for disease prevalence in the community via the detection of genetic materials in the wastewater. In numerous nation-states, studies have indicated the presence of SARS-CoV-2 in wastewater. Herein, we report the primary time-course monitoring of SARS-CoV-2 RNA in wastewater samples in São José do Rio Preto-SP/Brazil in order to explain the dynamics of the presence of SARS-CoV-2 RNA during one year of the SARS-CoV-2 pandemic and analyze possible relationships with other environmental parameters. We performed RNA quantification of SARS-CoV-2 by RT-qPCR using N1 and N2 targets. The proportion of positive samples for every target resulted in 100% and 96.6% for N1 and N2, respectively. A mean lag of -5 days is observed between the wastewater signal and the new SARS-CoV-2-positive cases reported. A correlation was found between the air and wastewater temperatures and therefore between the SARS-CoV-2 viral titers for N1 and N2 targets. We also observed a correlation between SARS-CoV-2 viral titers and media wastewater flow for the N1 target. In addition, we observed higher viral genome copies within the wastewater samples collected on non-rainy days for the N1 target. Thus, we propose that, based on our results, monitoring raw wastewater may be a broadly applicable strategy that might contribute to resolving the pressing problem of insufficient diagnostic testing; it may represent an inexpensive and early-warning method for future COVID-19 outbreaks, mainly in lower- and middle-income countries.Laboratory of Genomic Studies Institute of Biosciences Letters and Exact Sciences (IBILCE) São Paulo State University (UNESP), SPInstitute of Exact and Technological Sciences (ICET) University Feevale, RSSeMAE-Autonomous Municipal Water and Sewage Service, SPVirology Research Laboratory (LPV) Faculty of Medicine of São José do Rio Preto (FAMERP), SPApplied Preventive Veterinary Medicine Laboratory Department of Veterinary Medicine Faculty of Animal Science and Food Engineering (FZEA) University of São Paulo (USP), SPDepartment of Clinical Analysis School of Pharmaceutical Sciences São Paulo State University (UNESP), SPBiotechnology Institute São Paulo State University (UNESP), SPMolecular Microbiology Laboratory University Feevale, RSLaboratory of Genomic Studies Institute of Biosciences Letters and Exact Sciences (IBILCE) São Paulo State University (UNESP), SPDepartment of Clinical Analysis School of Pharmaceutical Sciences São Paulo State University (UNESP), SPBiotechnology Institute São Paulo State University (UNESP), SPUniversidade Estadual Paulista (UNESP)University FeevaleSeMAE-Autonomous Municipal Water and Sewage ServiceFaculty of Medicine of São José do Rio Preto (FAMERP)Universidade de São Paulo (USP)Martins, Renan Moura [UNESP]Carvalho, Tamara [UNESP]Bittar, Cintia [UNESP]Quevedo, Daniela MullerMiceli, Rafael NavaNogueira, Mauricio LacerdaFerreira, Helena LageCosta, Paulo Inácio [UNESP]Araújo, João Pessoa [UNESP]Spilki, Fernando RosadoRahal, Paula [UNESP]Calmon, Marilia Freitas [UNESP]2023-07-29T13:27:56Z2023-07-29T13:27:56Z2022-11-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3390/v14112333Viruses, v. 14, n. 11, 2022.1999-4915http://hdl.handle.net/11449/24786210.3390/v141123332-s2.0-85141753977Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengVirusesinfo:eu-repo/semantics/openAccess2023-07-29T13:27:56Zoai:repositorio.unesp.br:11449/247862Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-07-29T13:27:56Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil
title Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil
spellingShingle Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil
Martins, Renan Moura [UNESP]
epidemiology
qRT-PCR
SARS-CoV-2
wastewater
title_short Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil
title_full Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil
title_fullStr Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil
title_full_unstemmed Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil
title_sort Long-Term Wastewater Surveillance for SARS-CoV-2: One-Year Study in Brazil
author Martins, Renan Moura [UNESP]
author_facet Martins, Renan Moura [UNESP]
Carvalho, Tamara [UNESP]
Bittar, Cintia [UNESP]
Quevedo, Daniela Muller
Miceli, Rafael Nava
Nogueira, Mauricio Lacerda
Ferreira, Helena Lage
Costa, Paulo Inácio [UNESP]
Araújo, João Pessoa [UNESP]
Spilki, Fernando Rosado
Rahal, Paula [UNESP]
Calmon, Marilia Freitas [UNESP]
author_role author
author2 Carvalho, Tamara [UNESP]
Bittar, Cintia [UNESP]
Quevedo, Daniela Muller
Miceli, Rafael Nava
Nogueira, Mauricio Lacerda
Ferreira, Helena Lage
Costa, Paulo Inácio [UNESP]
Araújo, João Pessoa [UNESP]
Spilki, Fernando Rosado
Rahal, Paula [UNESP]
Calmon, Marilia Freitas [UNESP]
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
University Feevale
SeMAE-Autonomous Municipal Water and Sewage Service
Faculty of Medicine of São José do Rio Preto (FAMERP)
Universidade de São Paulo (USP)
dc.contributor.author.fl_str_mv Martins, Renan Moura [UNESP]
Carvalho, Tamara [UNESP]
Bittar, Cintia [UNESP]
Quevedo, Daniela Muller
Miceli, Rafael Nava
Nogueira, Mauricio Lacerda
Ferreira, Helena Lage
Costa, Paulo Inácio [UNESP]
Araújo, João Pessoa [UNESP]
Spilki, Fernando Rosado
Rahal, Paula [UNESP]
Calmon, Marilia Freitas [UNESP]
dc.subject.por.fl_str_mv epidemiology
qRT-PCR
SARS-CoV-2
wastewater
topic epidemiology
qRT-PCR
SARS-CoV-2
wastewater
description Wastewater-based epidemiology (WBE) is a tool involving the analysis of wastewater for chemicals and pathogens at the community level. WBE has been shown to be an effective surveillance system for SARS-CoV-2, providing an early-warning-detection system for disease prevalence in the community via the detection of genetic materials in the wastewater. In numerous nation-states, studies have indicated the presence of SARS-CoV-2 in wastewater. Herein, we report the primary time-course monitoring of SARS-CoV-2 RNA in wastewater samples in São José do Rio Preto-SP/Brazil in order to explain the dynamics of the presence of SARS-CoV-2 RNA during one year of the SARS-CoV-2 pandemic and analyze possible relationships with other environmental parameters. We performed RNA quantification of SARS-CoV-2 by RT-qPCR using N1 and N2 targets. The proportion of positive samples for every target resulted in 100% and 96.6% for N1 and N2, respectively. A mean lag of -5 days is observed between the wastewater signal and the new SARS-CoV-2-positive cases reported. A correlation was found between the air and wastewater temperatures and therefore between the SARS-CoV-2 viral titers for N1 and N2 targets. We also observed a correlation between SARS-CoV-2 viral titers and media wastewater flow for the N1 target. In addition, we observed higher viral genome copies within the wastewater samples collected on non-rainy days for the N1 target. Thus, we propose that, based on our results, monitoring raw wastewater may be a broadly applicable strategy that might contribute to resolving the pressing problem of insufficient diagnostic testing; it may represent an inexpensive and early-warning method for future COVID-19 outbreaks, mainly in lower- and middle-income countries.
publishDate 2022
dc.date.none.fl_str_mv 2022-11-01
2023-07-29T13:27:56Z
2023-07-29T13:27:56Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3390/v14112333
Viruses, v. 14, n. 11, 2022.
1999-4915
http://hdl.handle.net/11449/247862
10.3390/v14112333
2-s2.0-85141753977
url http://dx.doi.org/10.3390/v14112333
http://hdl.handle.net/11449/247862
identifier_str_mv Viruses, v. 14, n. 11, 2022.
1999-4915
10.3390/v14112333
2-s2.0-85141753977
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Viruses
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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