Helena and BS: Two travellers between the genera drosophila and zaprionus

Detalhes bibliográficos
Autor(a) principal: Simão, Maryanna C. [UNESP]
Data de Publicação: 2018
Outros Autores: Haudry, Annabelle, Granzotto, Adriana [UNESP], De Setta, Nathalia, Carareto, Claudia M.A. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1093/gbe/evy184
http://hdl.handle.net/11449/186946
Resumo: The frequency of horizontal transfers of transposable elements (HTTs) varies among the types of elements according to the transposition mode and the geographical and temporal overlap of the species involved in the transfer. The drosophilid species of the genus Zaprionus and those of the melanogaster, obscura, repleta, and virilis groups of the genus Drosophila investigated in this study shared space and time at some point in their evolutionary history. This is particularly true of the subgenus Zaprionus and the melanogaster subgroup, which overlapped both geographically and temporally in Tropical Africa during their period of origin and diversification. Here, we tested the hypothesis that this overlap may have facilitated the transfer of retrotransposons without long terminal repeats (non-LTRs) between these species. We estimated the HTT frequency of the non-LTRs BS and Helena at the genome-wide scale by using a phylogenetic framework and a vertical and horizontal inheritance consistence analysis (VHICA). An excessively low synonymous divergence among distantly related species and incongruities between the transposable element and species phylogenies allowed us to propose at least four relatively recent HTT events of Helena and BS involving ancestors of the subgroup melanogaster and ancestors of the subgenus Zaprionus during their concomitant diversification in Tropical Africa, along with older possible events between species of the subgenera Drosophila and Sophophora. This study provides the first evidence for HTT of non-LTRs retrotransposons between Drosophila and Zaprionus, including an in-depth reconstruction of the time frame and geography of these events.
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spelling Helena and BS: Two travellers between the genera drosophila and zaprionusDrosophilids.Horizontal transferNon-LTR retrotransposonsTransposable elementsThe frequency of horizontal transfers of transposable elements (HTTs) varies among the types of elements according to the transposition mode and the geographical and temporal overlap of the species involved in the transfer. The drosophilid species of the genus Zaprionus and those of the melanogaster, obscura, repleta, and virilis groups of the genus Drosophila investigated in this study shared space and time at some point in their evolutionary history. This is particularly true of the subgenus Zaprionus and the melanogaster subgroup, which overlapped both geographically and temporally in Tropical Africa during their period of origin and diversification. Here, we tested the hypothesis that this overlap may have facilitated the transfer of retrotransposons without long terminal repeats (non-LTRs) between these species. We estimated the HTT frequency of the non-LTRs BS and Helena at the genome-wide scale by using a phylogenetic framework and a vertical and horizontal inheritance consistence analysis (VHICA). An excessively low synonymous divergence among distantly related species and incongruities between the transposable element and species phylogenies allowed us to propose at least four relatively recent HTT events of Helena and BS involving ancestors of the subgroup melanogaster and ancestors of the subgenus Zaprionus during their concomitant diversification in Tropical Africa, along with older possible events between species of the subgenera Drosophila and Sophophora. This study provides the first evidence for HTT of non-LTRs retrotransposons between Drosophila and Zaprionus, including an in-depth reconstruction of the time frame and geography of these events.Universidade Estadual Paulista (Unesp) Instituto de Biociências Letras e Ciências Exatas (Ibilce)Univ Lyon Université Lyon 1 CNRS Laboratoire de Biométrie et Biologie EvolutiveUniversidade Federal Do ABC (UFABC) Centro de Ciências Naturais e Humanas (CCNH)Universidade Estadual Paulista (Unesp) Instituto de Biociências Letras e Ciências Exatas (Ibilce)Universidade Estadual Paulista (Unesp)Laboratoire de Biométrie et Biologie EvolutiveUniversidade Federal do ABC (UFABC)Simão, Maryanna C. [UNESP]Haudry, AnnabelleGranzotto, Adriana [UNESP]De Setta, NathaliaCarareto, Claudia M.A. [UNESP]2019-10-06T15:20:44Z2019-10-06T15:20:44Z2018-10-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article2671-2685http://dx.doi.org/10.1093/gbe/evy184Genome Biology and Evolution, v. 10, n. 10, p. 2671-2685, 2018.1759-6653http://hdl.handle.net/11449/18694610.1093/gbe/evy1842-s2.0-8505475231834257729983192160000-0002-0298-1354Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGenome Biology and Evolutioninfo:eu-repo/semantics/openAccess2021-11-05T11:20:01Zoai:repositorio.unesp.br:11449/186946Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-11-05T11:20:01Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Helena and BS: Two travellers between the genera drosophila and zaprionus
title Helena and BS: Two travellers between the genera drosophila and zaprionus
spellingShingle Helena and BS: Two travellers between the genera drosophila and zaprionus
Simão, Maryanna C. [UNESP]
Drosophilids.
Horizontal transfer
Non-LTR retrotransposons
Transposable elements
title_short Helena and BS: Two travellers between the genera drosophila and zaprionus
title_full Helena and BS: Two travellers between the genera drosophila and zaprionus
title_fullStr Helena and BS: Two travellers between the genera drosophila and zaprionus
title_full_unstemmed Helena and BS: Two travellers between the genera drosophila and zaprionus
title_sort Helena and BS: Two travellers between the genera drosophila and zaprionus
author Simão, Maryanna C. [UNESP]
author_facet Simão, Maryanna C. [UNESP]
Haudry, Annabelle
Granzotto, Adriana [UNESP]
De Setta, Nathalia
Carareto, Claudia M.A. [UNESP]
author_role author
author2 Haudry, Annabelle
Granzotto, Adriana [UNESP]
De Setta, Nathalia
Carareto, Claudia M.A. [UNESP]
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Laboratoire de Biométrie et Biologie Evolutive
Universidade Federal do ABC (UFABC)
dc.contributor.author.fl_str_mv Simão, Maryanna C. [UNESP]
Haudry, Annabelle
Granzotto, Adriana [UNESP]
De Setta, Nathalia
Carareto, Claudia M.A. [UNESP]
dc.subject.por.fl_str_mv Drosophilids.
Horizontal transfer
Non-LTR retrotransposons
Transposable elements
topic Drosophilids.
Horizontal transfer
Non-LTR retrotransposons
Transposable elements
description The frequency of horizontal transfers of transposable elements (HTTs) varies among the types of elements according to the transposition mode and the geographical and temporal overlap of the species involved in the transfer. The drosophilid species of the genus Zaprionus and those of the melanogaster, obscura, repleta, and virilis groups of the genus Drosophila investigated in this study shared space and time at some point in their evolutionary history. This is particularly true of the subgenus Zaprionus and the melanogaster subgroup, which overlapped both geographically and temporally in Tropical Africa during their period of origin and diversification. Here, we tested the hypothesis that this overlap may have facilitated the transfer of retrotransposons without long terminal repeats (non-LTRs) between these species. We estimated the HTT frequency of the non-LTRs BS and Helena at the genome-wide scale by using a phylogenetic framework and a vertical and horizontal inheritance consistence analysis (VHICA). An excessively low synonymous divergence among distantly related species and incongruities between the transposable element and species phylogenies allowed us to propose at least four relatively recent HTT events of Helena and BS involving ancestors of the subgroup melanogaster and ancestors of the subgenus Zaprionus during their concomitant diversification in Tropical Africa, along with older possible events between species of the subgenera Drosophila and Sophophora. This study provides the first evidence for HTT of non-LTRs retrotransposons between Drosophila and Zaprionus, including an in-depth reconstruction of the time frame and geography of these events.
publishDate 2018
dc.date.none.fl_str_mv 2018-10-01
2019-10-06T15:20:44Z
2019-10-06T15:20:44Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1093/gbe/evy184
Genome Biology and Evolution, v. 10, n. 10, p. 2671-2685, 2018.
1759-6653
http://hdl.handle.net/11449/186946
10.1093/gbe/evy184
2-s2.0-85054752318
3425772998319216
0000-0002-0298-1354
url http://dx.doi.org/10.1093/gbe/evy184
http://hdl.handle.net/11449/186946
identifier_str_mv Genome Biology and Evolution, v. 10, n. 10, p. 2671-2685, 2018.
1759-6653
10.1093/gbe/evy184
2-s2.0-85054752318
3425772998319216
0000-0002-0298-1354
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Genome Biology and Evolution
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 2671-2685
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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