Helena and BS: Two travellers between the genera drosophila and zaprionus
Autor(a) principal: | |
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Data de Publicação: | 2018 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1093/gbe/evy184 http://hdl.handle.net/11449/186946 |
Resumo: | The frequency of horizontal transfers of transposable elements (HTTs) varies among the types of elements according to the transposition mode and the geographical and temporal overlap of the species involved in the transfer. The drosophilid species of the genus Zaprionus and those of the melanogaster, obscura, repleta, and virilis groups of the genus Drosophila investigated in this study shared space and time at some point in their evolutionary history. This is particularly true of the subgenus Zaprionus and the melanogaster subgroup, which overlapped both geographically and temporally in Tropical Africa during their period of origin and diversification. Here, we tested the hypothesis that this overlap may have facilitated the transfer of retrotransposons without long terminal repeats (non-LTRs) between these species. We estimated the HTT frequency of the non-LTRs BS and Helena at the genome-wide scale by using a phylogenetic framework and a vertical and horizontal inheritance consistence analysis (VHICA). An excessively low synonymous divergence among distantly related species and incongruities between the transposable element and species phylogenies allowed us to propose at least four relatively recent HTT events of Helena and BS involving ancestors of the subgroup melanogaster and ancestors of the subgenus Zaprionus during their concomitant diversification in Tropical Africa, along with older possible events between species of the subgenera Drosophila and Sophophora. This study provides the first evidence for HTT of non-LTRs retrotransposons between Drosophila and Zaprionus, including an in-depth reconstruction of the time frame and geography of these events. |
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Helena and BS: Two travellers between the genera drosophila and zaprionusDrosophilids.Horizontal transferNon-LTR retrotransposonsTransposable elementsThe frequency of horizontal transfers of transposable elements (HTTs) varies among the types of elements according to the transposition mode and the geographical and temporal overlap of the species involved in the transfer. The drosophilid species of the genus Zaprionus and those of the melanogaster, obscura, repleta, and virilis groups of the genus Drosophila investigated in this study shared space and time at some point in their evolutionary history. This is particularly true of the subgenus Zaprionus and the melanogaster subgroup, which overlapped both geographically and temporally in Tropical Africa during their period of origin and diversification. Here, we tested the hypothesis that this overlap may have facilitated the transfer of retrotransposons without long terminal repeats (non-LTRs) between these species. We estimated the HTT frequency of the non-LTRs BS and Helena at the genome-wide scale by using a phylogenetic framework and a vertical and horizontal inheritance consistence analysis (VHICA). An excessively low synonymous divergence among distantly related species and incongruities between the transposable element and species phylogenies allowed us to propose at least four relatively recent HTT events of Helena and BS involving ancestors of the subgroup melanogaster and ancestors of the subgenus Zaprionus during their concomitant diversification in Tropical Africa, along with older possible events between species of the subgenera Drosophila and Sophophora. This study provides the first evidence for HTT of non-LTRs retrotransposons between Drosophila and Zaprionus, including an in-depth reconstruction of the time frame and geography of these events.Universidade Estadual Paulista (Unesp) Instituto de Biociências Letras e Ciências Exatas (Ibilce)Univ Lyon Université Lyon 1 CNRS Laboratoire de Biométrie et Biologie EvolutiveUniversidade Federal Do ABC (UFABC) Centro de Ciências Naturais e Humanas (CCNH)Universidade Estadual Paulista (Unesp) Instituto de Biociências Letras e Ciências Exatas (Ibilce)Universidade Estadual Paulista (Unesp)Laboratoire de Biométrie et Biologie EvolutiveUniversidade Federal do ABC (UFABC)Simão, Maryanna C. [UNESP]Haudry, AnnabelleGranzotto, Adriana [UNESP]De Setta, NathaliaCarareto, Claudia M.A. [UNESP]2019-10-06T15:20:44Z2019-10-06T15:20:44Z2018-10-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article2671-2685http://dx.doi.org/10.1093/gbe/evy184Genome Biology and Evolution, v. 10, n. 10, p. 2671-2685, 2018.1759-6653http://hdl.handle.net/11449/18694610.1093/gbe/evy1842-s2.0-8505475231834257729983192160000-0002-0298-1354Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGenome Biology and Evolutioninfo:eu-repo/semantics/openAccess2021-11-05T11:20:01Zoai:repositorio.unesp.br:11449/186946Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-11-05T11:20:01Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Helena and BS: Two travellers between the genera drosophila and zaprionus |
title |
Helena and BS: Two travellers between the genera drosophila and zaprionus |
spellingShingle |
Helena and BS: Two travellers between the genera drosophila and zaprionus Simão, Maryanna C. [UNESP] Drosophilids. Horizontal transfer Non-LTR retrotransposons Transposable elements |
title_short |
Helena and BS: Two travellers between the genera drosophila and zaprionus |
title_full |
Helena and BS: Two travellers between the genera drosophila and zaprionus |
title_fullStr |
Helena and BS: Two travellers between the genera drosophila and zaprionus |
title_full_unstemmed |
Helena and BS: Two travellers between the genera drosophila and zaprionus |
title_sort |
Helena and BS: Two travellers between the genera drosophila and zaprionus |
author |
Simão, Maryanna C. [UNESP] |
author_facet |
Simão, Maryanna C. [UNESP] Haudry, Annabelle Granzotto, Adriana [UNESP] De Setta, Nathalia Carareto, Claudia M.A. [UNESP] |
author_role |
author |
author2 |
Haudry, Annabelle Granzotto, Adriana [UNESP] De Setta, Nathalia Carareto, Claudia M.A. [UNESP] |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Laboratoire de Biométrie et Biologie Evolutive Universidade Federal do ABC (UFABC) |
dc.contributor.author.fl_str_mv |
Simão, Maryanna C. [UNESP] Haudry, Annabelle Granzotto, Adriana [UNESP] De Setta, Nathalia Carareto, Claudia M.A. [UNESP] |
dc.subject.por.fl_str_mv |
Drosophilids. Horizontal transfer Non-LTR retrotransposons Transposable elements |
topic |
Drosophilids. Horizontal transfer Non-LTR retrotransposons Transposable elements |
description |
The frequency of horizontal transfers of transposable elements (HTTs) varies among the types of elements according to the transposition mode and the geographical and temporal overlap of the species involved in the transfer. The drosophilid species of the genus Zaprionus and those of the melanogaster, obscura, repleta, and virilis groups of the genus Drosophila investigated in this study shared space and time at some point in their evolutionary history. This is particularly true of the subgenus Zaprionus and the melanogaster subgroup, which overlapped both geographically and temporally in Tropical Africa during their period of origin and diversification. Here, we tested the hypothesis that this overlap may have facilitated the transfer of retrotransposons without long terminal repeats (non-LTRs) between these species. We estimated the HTT frequency of the non-LTRs BS and Helena at the genome-wide scale by using a phylogenetic framework and a vertical and horizontal inheritance consistence analysis (VHICA). An excessively low synonymous divergence among distantly related species and incongruities between the transposable element and species phylogenies allowed us to propose at least four relatively recent HTT events of Helena and BS involving ancestors of the subgroup melanogaster and ancestors of the subgenus Zaprionus during their concomitant diversification in Tropical Africa, along with older possible events between species of the subgenera Drosophila and Sophophora. This study provides the first evidence for HTT of non-LTRs retrotransposons between Drosophila and Zaprionus, including an in-depth reconstruction of the time frame and geography of these events. |
publishDate |
2018 |
dc.date.none.fl_str_mv |
2018-10-01 2019-10-06T15:20:44Z 2019-10-06T15:20:44Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1093/gbe/evy184 Genome Biology and Evolution, v. 10, n. 10, p. 2671-2685, 2018. 1759-6653 http://hdl.handle.net/11449/186946 10.1093/gbe/evy184 2-s2.0-85054752318 3425772998319216 0000-0002-0298-1354 |
url |
http://dx.doi.org/10.1093/gbe/evy184 http://hdl.handle.net/11449/186946 |
identifier_str_mv |
Genome Biology and Evolution, v. 10, n. 10, p. 2671-2685, 2018. 1759-6653 10.1093/gbe/evy184 2-s2.0-85054752318 3425772998319216 0000-0002-0298-1354 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Genome Biology and Evolution |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
2671-2685 |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1799964399848390656 |