Genetic characterization of an X-STR decaplex system in the State of Mato Grosso, Brazil: distribution, forensic efficiency and population structure

Detalhes bibliográficos
Autor(a) principal: Martins, Joyce A.
Data de Publicação: 2017
Outros Autores: Martins, Denise P., Oliveira-Brancati, Camila I. F., Martinez, Juliana [UNESP], Cicarelli, Regina M. B. [UNESP], Souza, Dorotéia R. S.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1007/s00414-017-1578-6
http://hdl.handle.net/11449/176997
Resumo: Studies with X-STR loci show population genetic substructure, which makes necessary the characterization of such markers in the different geographical and/or ethnic populations. Therefore, this study assessed the distribution and forensic efficiency of an X-STR decaplex system in the population of the State of Mato Grosso, as well as analysed the population structure of this State based on the aforementioned system. All X-STR markers were in Hardy–Weinberg equilibrium and linkage equilibrium, and the DXS6809 was the most informative marker. The power of discrimination value in females and males was 0.99999999995 and 0.9999994, respectively. Analysis of molecular variance indicated 1.10% (p < 0.00001) of heterogeneity among Europeans, Africans, Brazilians and other Latin Americans, and in relation to such groups, the population of the State of Mato Grosso showed lower genetic variation when compared with the Brazilian group (−0.10%, p = 0.67327). The genetic distance analysis showed lower values of FST (0.0004 ≤ FST ≤ 0.00331), with non-significant p value (p > 0.00024), between the populations of Mato Grosso and Mato Grosso do Sul, Paraná and the Southeast region of Brazil (except for one sample of Rio de Janeiro). FST values with significant p values (p ≤ 0.00024) were obtained between the population of Mato Grosso and Iberian, African and some Latin American populations. The X-STR decaplex system proved to be extremely useful in the population of the State of Mato Grosso, and the data obtained does not show the need for a specific forensic database for this State in relation to the Brazilian populations compared in this study, except for population of Rio de Janeiro.
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spelling Genetic characterization of an X-STR decaplex system in the State of Mato Grosso, Brazil: distribution, forensic efficiency and population structureBrazilMato GrossoPopulation structureX-STRStudies with X-STR loci show population genetic substructure, which makes necessary the characterization of such markers in the different geographical and/or ethnic populations. Therefore, this study assessed the distribution and forensic efficiency of an X-STR decaplex system in the population of the State of Mato Grosso, as well as analysed the population structure of this State based on the aforementioned system. All X-STR markers were in Hardy–Weinberg equilibrium and linkage equilibrium, and the DXS6809 was the most informative marker. The power of discrimination value in females and males was 0.99999999995 and 0.9999994, respectively. Analysis of molecular variance indicated 1.10% (p < 0.00001) of heterogeneity among Europeans, Africans, Brazilians and other Latin Americans, and in relation to such groups, the population of the State of Mato Grosso showed lower genetic variation when compared with the Brazilian group (−0.10%, p = 0.67327). The genetic distance analysis showed lower values of FST (0.0004 ≤ FST ≤ 0.00331), with non-significant p value (p > 0.00024), between the populations of Mato Grosso and Mato Grosso do Sul, Paraná and the Southeast region of Brazil (except for one sample of Rio de Janeiro). FST values with significant p values (p ≤ 0.00024) were obtained between the population of Mato Grosso and Iberian, African and some Latin American populations. The X-STR decaplex system proved to be extremely useful in the population of the State of Mato Grosso, and the data obtained does not show the need for a specific forensic database for this State in relation to the Brazilian populations compared in this study, except for population of Rio de Janeiro.Research Centre for Biochemistry and Molecular Biology at the Medical School of São José do Rio Preto—FAMERP, Av. Brigadeiro Faria Lima, 5416School of Pharmaceutical Sciences Laboratory of Paternity Investigation Univ Estadual Paulista—UNESP, Rodovia Araraquara-Jaú, km 01School of Pharmaceutical Sciences Laboratory of Paternity Investigation Univ Estadual Paulista—UNESP, Rodovia Araraquara-Jaú, km 01Research Centre for Biochemistry and Molecular Biology at the Medical School of São José do Rio Preto—FAMERPUniversidade Estadual Paulista (Unesp)Martins, Joyce A.Martins, Denise P.Oliveira-Brancati, Camila I. F.Martinez, Juliana [UNESP]Cicarelli, Regina M. B. [UNESP]Souza, Dorotéia R. S.2018-12-11T17:23:26Z2018-12-11T17:23:26Z2017-11-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1523-1530application/pdfhttp://dx.doi.org/10.1007/s00414-017-1578-6International Journal of Legal Medicine, v. 131, n. 6, p. 1523-1530, 2017.1437-15960937-9827http://hdl.handle.net/11449/17699710.1007/s00414-017-1578-62-s2.0-850174219792-s2.0-85017421979.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengInternational Journal of Legal Medicine1,2101,210info:eu-repo/semantics/openAccess2024-01-26T06:32:01Zoai:repositorio.unesp.br:11449/176997Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-01-26T06:32:01Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Genetic characterization of an X-STR decaplex system in the State of Mato Grosso, Brazil: distribution, forensic efficiency and population structure
title Genetic characterization of an X-STR decaplex system in the State of Mato Grosso, Brazil: distribution, forensic efficiency and population structure
spellingShingle Genetic characterization of an X-STR decaplex system in the State of Mato Grosso, Brazil: distribution, forensic efficiency and population structure
Martins, Joyce A.
Brazil
Mato Grosso
Population structure
X-STR
title_short Genetic characterization of an X-STR decaplex system in the State of Mato Grosso, Brazil: distribution, forensic efficiency and population structure
title_full Genetic characterization of an X-STR decaplex system in the State of Mato Grosso, Brazil: distribution, forensic efficiency and population structure
title_fullStr Genetic characterization of an X-STR decaplex system in the State of Mato Grosso, Brazil: distribution, forensic efficiency and population structure
title_full_unstemmed Genetic characterization of an X-STR decaplex system in the State of Mato Grosso, Brazil: distribution, forensic efficiency and population structure
title_sort Genetic characterization of an X-STR decaplex system in the State of Mato Grosso, Brazil: distribution, forensic efficiency and population structure
author Martins, Joyce A.
author_facet Martins, Joyce A.
Martins, Denise P.
Oliveira-Brancati, Camila I. F.
Martinez, Juliana [UNESP]
Cicarelli, Regina M. B. [UNESP]
Souza, Dorotéia R. S.
author_role author
author2 Martins, Denise P.
Oliveira-Brancati, Camila I. F.
Martinez, Juliana [UNESP]
Cicarelli, Regina M. B. [UNESP]
Souza, Dorotéia R. S.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Research Centre for Biochemistry and Molecular Biology at the Medical School of São José do Rio Preto—FAMERP
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Martins, Joyce A.
Martins, Denise P.
Oliveira-Brancati, Camila I. F.
Martinez, Juliana [UNESP]
Cicarelli, Regina M. B. [UNESP]
Souza, Dorotéia R. S.
dc.subject.por.fl_str_mv Brazil
Mato Grosso
Population structure
X-STR
topic Brazil
Mato Grosso
Population structure
X-STR
description Studies with X-STR loci show population genetic substructure, which makes necessary the characterization of such markers in the different geographical and/or ethnic populations. Therefore, this study assessed the distribution and forensic efficiency of an X-STR decaplex system in the population of the State of Mato Grosso, as well as analysed the population structure of this State based on the aforementioned system. All X-STR markers were in Hardy–Weinberg equilibrium and linkage equilibrium, and the DXS6809 was the most informative marker. The power of discrimination value in females and males was 0.99999999995 and 0.9999994, respectively. Analysis of molecular variance indicated 1.10% (p < 0.00001) of heterogeneity among Europeans, Africans, Brazilians and other Latin Americans, and in relation to such groups, the population of the State of Mato Grosso showed lower genetic variation when compared with the Brazilian group (−0.10%, p = 0.67327). The genetic distance analysis showed lower values of FST (0.0004 ≤ FST ≤ 0.00331), with non-significant p value (p > 0.00024), between the populations of Mato Grosso and Mato Grosso do Sul, Paraná and the Southeast region of Brazil (except for one sample of Rio de Janeiro). FST values with significant p values (p ≤ 0.00024) were obtained between the population of Mato Grosso and Iberian, African and some Latin American populations. The X-STR decaplex system proved to be extremely useful in the population of the State of Mato Grosso, and the data obtained does not show the need for a specific forensic database for this State in relation to the Brazilian populations compared in this study, except for population of Rio de Janeiro.
publishDate 2017
dc.date.none.fl_str_mv 2017-11-01
2018-12-11T17:23:26Z
2018-12-11T17:23:26Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1007/s00414-017-1578-6
International Journal of Legal Medicine, v. 131, n. 6, p. 1523-1530, 2017.
1437-1596
0937-9827
http://hdl.handle.net/11449/176997
10.1007/s00414-017-1578-6
2-s2.0-85017421979
2-s2.0-85017421979.pdf
url http://dx.doi.org/10.1007/s00414-017-1578-6
http://hdl.handle.net/11449/176997
identifier_str_mv International Journal of Legal Medicine, v. 131, n. 6, p. 1523-1530, 2017.
1437-1596
0937-9827
10.1007/s00414-017-1578-6
2-s2.0-85017421979
2-s2.0-85017421979.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv International Journal of Legal Medicine
1,210
1,210
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1523-1530
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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