Segmentation of Oral Epithelial Dysplasias Employing Mask R-CNN and Color Normalization

Detalhes bibliográficos
Autor(a) principal: Silva, Adriano B.
Data de Publicação: 2020
Outros Autores: Santos, Dali F. D. Dos, Tosta, Thaina A. A., Martins, Alessandro S., Neves, Leandro A. [UNESP], Travenclo, Bruno A. N., Faria, Paulo R. De, Nascimento, Marcelo Z. Do
Tipo de documento: Artigo de conferência
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1109/BIBM49941.2020.9313101
http://hdl.handle.net/11449/207224
Resumo: Oral epithelial dysplasia is a common type of pre-cancerous lesion that can be categorized as mild, moderate and severe. The manual diagnosis of this type of lesion is a time consuming and complex task. The use of digital systems applied to microscopic image analysis can aid the decision making of specialists. In recent years, deep learning-based methods are getting more attention due to its improved results in nuclei segmentation tasks. In this paper, we propose a methodology for nuclei segmentation on images of dysplastic tissues using neural networks. Several optimization algorithms and color normalization methods were evaluated. The methodology was performed on a dataset of mice tongue images. The experimental evaluations showed that the Nadam optimizer in combination with images without the use of color normalization obtained the best results. The method was able to segment the images with an average accuracy of 0.887, the sensitivity of 0.762 and specificity of 0.942. The algorithm was compared to other segmentation methods and showed relevant results. These values indicate that the proposed method can be used as a tool to aid specialists in the nuclei analysis of histological images of the buccal cavity.
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spelling Segmentation of Oral Epithelial Dysplasias Employing Mask R-CNN and Color Normalizationcolor normalizationconvolutional neural networkDysplasianuclei segmentation.Oral epithelial dysplasia is a common type of pre-cancerous lesion that can be categorized as mild, moderate and severe. The manual diagnosis of this type of lesion is a time consuming and complex task. The use of digital systems applied to microscopic image analysis can aid the decision making of specialists. In recent years, deep learning-based methods are getting more attention due to its improved results in nuclei segmentation tasks. In this paper, we propose a methodology for nuclei segmentation on images of dysplastic tissues using neural networks. Several optimization algorithms and color normalization methods were evaluated. The methodology was performed on a dataset of mice tongue images. The experimental evaluations showed that the Nadam optimizer in combination with images without the use of color normalization obtained the best results. The method was able to segment the images with an average accuracy of 0.887, the sensitivity of 0.762 and specificity of 0.942. The algorithm was compared to other segmentation methods and showed relevant results. These values indicate that the proposed method can be used as a tool to aid specialists in the nuclei analysis of histological images of the buccal cavity.Facom UfuIct UnifespIftmDcce UnespDcce UnespFacom UfuUniversidade Federal de São Paulo (UNIFESP)IftmUniversidade Estadual Paulista (Unesp)Silva, Adriano B.Santos, Dali F. D. DosTosta, Thaina A. A.Martins, Alessandro S.Neves, Leandro A. [UNESP]Travenclo, Bruno A. N.Faria, Paulo R. DeNascimento, Marcelo Z. Do2021-06-25T10:50:58Z2021-06-25T10:50:58Z2020-12-16info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/conferenceObject2818-2824http://dx.doi.org/10.1109/BIBM49941.2020.9313101Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020, p. 2818-2824.http://hdl.handle.net/11449/20722410.1109/BIBM49941.2020.93131012-s2.0-85100346447Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengProceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020info:eu-repo/semantics/openAccess2021-10-23T16:36:59Zoai:repositorio.unesp.br:11449/207224Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T16:36:59Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Segmentation of Oral Epithelial Dysplasias Employing Mask R-CNN and Color Normalization
title Segmentation of Oral Epithelial Dysplasias Employing Mask R-CNN and Color Normalization
spellingShingle Segmentation of Oral Epithelial Dysplasias Employing Mask R-CNN and Color Normalization
Silva, Adriano B.
color normalization
convolutional neural network
Dysplasia
nuclei segmentation.
title_short Segmentation of Oral Epithelial Dysplasias Employing Mask R-CNN and Color Normalization
title_full Segmentation of Oral Epithelial Dysplasias Employing Mask R-CNN and Color Normalization
title_fullStr Segmentation of Oral Epithelial Dysplasias Employing Mask R-CNN and Color Normalization
title_full_unstemmed Segmentation of Oral Epithelial Dysplasias Employing Mask R-CNN and Color Normalization
title_sort Segmentation of Oral Epithelial Dysplasias Employing Mask R-CNN and Color Normalization
author Silva, Adriano B.
author_facet Silva, Adriano B.
Santos, Dali F. D. Dos
Tosta, Thaina A. A.
Martins, Alessandro S.
Neves, Leandro A. [UNESP]
Travenclo, Bruno A. N.
Faria, Paulo R. De
Nascimento, Marcelo Z. Do
author_role author
author2 Santos, Dali F. D. Dos
Tosta, Thaina A. A.
Martins, Alessandro S.
Neves, Leandro A. [UNESP]
Travenclo, Bruno A. N.
Faria, Paulo R. De
Nascimento, Marcelo Z. Do
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Facom Ufu
Universidade Federal de São Paulo (UNIFESP)
Iftm
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Silva, Adriano B.
Santos, Dali F. D. Dos
Tosta, Thaina A. A.
Martins, Alessandro S.
Neves, Leandro A. [UNESP]
Travenclo, Bruno A. N.
Faria, Paulo R. De
Nascimento, Marcelo Z. Do
dc.subject.por.fl_str_mv color normalization
convolutional neural network
Dysplasia
nuclei segmentation.
topic color normalization
convolutional neural network
Dysplasia
nuclei segmentation.
description Oral epithelial dysplasia is a common type of pre-cancerous lesion that can be categorized as mild, moderate and severe. The manual diagnosis of this type of lesion is a time consuming and complex task. The use of digital systems applied to microscopic image analysis can aid the decision making of specialists. In recent years, deep learning-based methods are getting more attention due to its improved results in nuclei segmentation tasks. In this paper, we propose a methodology for nuclei segmentation on images of dysplastic tissues using neural networks. Several optimization algorithms and color normalization methods were evaluated. The methodology was performed on a dataset of mice tongue images. The experimental evaluations showed that the Nadam optimizer in combination with images without the use of color normalization obtained the best results. The method was able to segment the images with an average accuracy of 0.887, the sensitivity of 0.762 and specificity of 0.942. The algorithm was compared to other segmentation methods and showed relevant results. These values indicate that the proposed method can be used as a tool to aid specialists in the nuclei analysis of histological images of the buccal cavity.
publishDate 2020
dc.date.none.fl_str_mv 2020-12-16
2021-06-25T10:50:58Z
2021-06-25T10:50:58Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/conferenceObject
format conferenceObject
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1109/BIBM49941.2020.9313101
Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020, p. 2818-2824.
http://hdl.handle.net/11449/207224
10.1109/BIBM49941.2020.9313101
2-s2.0-85100346447
url http://dx.doi.org/10.1109/BIBM49941.2020.9313101
http://hdl.handle.net/11449/207224
identifier_str_mv Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020, p. 2818-2824.
10.1109/BIBM49941.2020.9313101
2-s2.0-85100346447
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 2818-2824
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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