Untargeted Metabolomics Sheds Light on the Diversity of Major Classes of Secondary Metabolites in the Malpighiaceae Botanical Family

Detalhes bibliográficos
Autor(a) principal: Mannochio-Russo, Helena [UNESP]
Data de Publicação: 2022
Outros Autores: Almeida, Rafael F. de, Nunes, Wilhan D. G., Bueno, Paula C. P., Caraballo-Rodriguez, Andres M., Bauermeister, Anelize, Dorrestein, Pieter C., Bolzani, Vanderlan S. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3389/fpls.2022.854842
http://hdl.handle.net/11449/237731
Resumo: Natural products produced by plants are one of the most investigated natural sources, which substantially contributed to the development of the natural products field. Even though these compounds are widely explored, the literature still lacks comprehensive investigations aiming to explore the evolution of secondary metabolites produced by plants, especially if classical methodologies are employed. The development of sensitive hyphenated techniques and computational tools for data processing has enabled the study of large datasets, being valuable assets for chemosystematic studies. Here, we describe a strategy for chemotaxonomic investigations using the Malpighiaceae botanical family as a model. Our workflow was based on MS/MS untargeted metabolomics, spectral searches, and recently described in silico classification tools, which were mapped into the latest molecular phylogeny accepted for this family. The metabolomic analysis revealed that different ionization modes and extraction protocols significantly impacted the chemical profiles, influencing the chemotaxonomic results. Spectral searches within public databases revealed several clades or genera-specific molecular families, being potential chemical markers for these taxa, while the in silico classification tools were able to expand the Malpighiaceae chemical space. The classes putatively annotated were used for ancestral character reconstructions, which recovered several classes of metabolites as homoplasies (i.e., non-exclusive) or synapomorphies (i.e., exclusive) for all sampled clades and genera. Our workflow combines several approaches to perform a comprehensive evolutionary chemical study. We expect it to be used on further chemotaxonomic investigations to expand chemical knowledge and reveal biological insights for compounds classes in different biological groups.
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spelling Untargeted Metabolomics Sheds Light on the Diversity of Major Classes of Secondary Metabolites in the Malpighiaceae Botanical FamilyChemotaxonomyMass spectrometryMetabolite annotationMetabolomicsEvolutionAncestral character reconstructionSystematicsMalpighialesNatural products produced by plants are one of the most investigated natural sources, which substantially contributed to the development of the natural products field. Even though these compounds are widely explored, the literature still lacks comprehensive investigations aiming to explore the evolution of secondary metabolites produced by plants, especially if classical methodologies are employed. The development of sensitive hyphenated techniques and computational tools for data processing has enabled the study of large datasets, being valuable assets for chemosystematic studies. Here, we describe a strategy for chemotaxonomic investigations using the Malpighiaceae botanical family as a model. Our workflow was based on MS/MS untargeted metabolomics, spectral searches, and recently described in silico classification tools, which were mapped into the latest molecular phylogeny accepted for this family. The metabolomic analysis revealed that different ionization modes and extraction protocols significantly impacted the chemical profiles, influencing the chemotaxonomic results. Spectral searches within public databases revealed several clades or genera-specific molecular families, being potential chemical markers for these taxa, while the in silico classification tools were able to expand the Malpighiaceae chemical space. The classes putatively annotated were used for ancestral character reconstructions, which recovered several classes of metabolites as homoplasies (i.e., non-exclusive) or synapomorphies (i.e., exclusive) for all sampled clades and genera. Our workflow combines several approaches to perform a comprehensive evolutionary chemical study. We expect it to be used on further chemotaxonomic investigations to expand chemical knowledge and reveal biological insights for compounds classes in different biological groups.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Brazilian Fulbright CommissionGordon and Betty Moore FoundationU.S. National Institutes of Health for the CenterFederal AwardSao Paulo State Univ UNESP, Inst Chem, Dept Biochem & Organ Chem, NuBBE, Araraquara, BrazilUniv Calif, Collaborat Mass Spectrometry Innovat Ctr, Skaggs Sch Pharm & Pharmaceut Sci, San Diego, CA USARoyal Bot Gardens Kew, Sci, Ecosyst Stewardship, Divers & Livelihoods, Richmond, EnglandFeira St ana State Univ UEFS, Dept Biol Sci, Lamol Lab, Feira De Santana, BrazilFed Inst Educ, Sci & Technol Rondonia, IFRO, Ji Parana, BrazilMax Planck Inst Mol Plant Physiol, Potsdam, GermanyFed Univ Alfenas UNIFAL, Inst Chem, Alfenas, BrazilSao Paulo State Univ UNESP, Inst Chem, Dept Biochem & Organ Chem, NuBBE, Araraquara, BrazilFAPESP: 2013/07600-3CNPq: 2014/465637-0CNPq: 142014/2018-4FAPESP: 2017/19702-6FAPESP: 2019/08477-7FAPESP: 2018/24865-4Gordon and Betty Moore Foundation: GBMF7622U.S. National Institutes of Health for the Center: P41 GM103484U.S. National Institutes of Health for the Center: R01 GM107550Federal Award: DE-SC0021340Federal Award: 1070261-436503FAPESP: 2014/50926-0Frontiers Media SaUniversidade Estadual Paulista (UNESP)Univ CalifRoyal Bot Gardens KewFeira St ana State Univ UEFSFed Inst EducMax Planck Inst Mol Plant PhysiolFed Univ Alfenas UNIFALMannochio-Russo, Helena [UNESP]Almeida, Rafael F. deNunes, Wilhan D. G.Bueno, Paula C. P.Caraballo-Rodriguez, Andres M.Bauermeister, AnelizeDorrestein, Pieter C.Bolzani, Vanderlan S. [UNESP]2022-11-30T13:43:13Z2022-11-30T13:43:13Z2022-04-14info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article19http://dx.doi.org/10.3389/fpls.2022.854842Frontiers In Plant Science. Lausanne: Frontiers Media Sa, v. 13, 19 p., 2022.1664-462Xhttp://hdl.handle.net/11449/23773110.3389/fpls.2022.854842WOS:000796351500001Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFrontiers In Plant Scienceinfo:eu-repo/semantics/openAccess2022-11-30T13:43:13Zoai:repositorio.unesp.br:11449/237731Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462022-11-30T13:43:13Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Untargeted Metabolomics Sheds Light on the Diversity of Major Classes of Secondary Metabolites in the Malpighiaceae Botanical Family
title Untargeted Metabolomics Sheds Light on the Diversity of Major Classes of Secondary Metabolites in the Malpighiaceae Botanical Family
spellingShingle Untargeted Metabolomics Sheds Light on the Diversity of Major Classes of Secondary Metabolites in the Malpighiaceae Botanical Family
Mannochio-Russo, Helena [UNESP]
Chemotaxonomy
Mass spectrometry
Metabolite annotation
Metabolomics
Evolution
Ancestral character reconstruction
Systematics
Malpighiales
title_short Untargeted Metabolomics Sheds Light on the Diversity of Major Classes of Secondary Metabolites in the Malpighiaceae Botanical Family
title_full Untargeted Metabolomics Sheds Light on the Diversity of Major Classes of Secondary Metabolites in the Malpighiaceae Botanical Family
title_fullStr Untargeted Metabolomics Sheds Light on the Diversity of Major Classes of Secondary Metabolites in the Malpighiaceae Botanical Family
title_full_unstemmed Untargeted Metabolomics Sheds Light on the Diversity of Major Classes of Secondary Metabolites in the Malpighiaceae Botanical Family
title_sort Untargeted Metabolomics Sheds Light on the Diversity of Major Classes of Secondary Metabolites in the Malpighiaceae Botanical Family
author Mannochio-Russo, Helena [UNESP]
author_facet Mannochio-Russo, Helena [UNESP]
Almeida, Rafael F. de
Nunes, Wilhan D. G.
Bueno, Paula C. P.
Caraballo-Rodriguez, Andres M.
Bauermeister, Anelize
Dorrestein, Pieter C.
Bolzani, Vanderlan S. [UNESP]
author_role author
author2 Almeida, Rafael F. de
Nunes, Wilhan D. G.
Bueno, Paula C. P.
Caraballo-Rodriguez, Andres M.
Bauermeister, Anelize
Dorrestein, Pieter C.
Bolzani, Vanderlan S. [UNESP]
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Univ Calif
Royal Bot Gardens Kew
Feira St ana State Univ UEFS
Fed Inst Educ
Max Planck Inst Mol Plant Physiol
Fed Univ Alfenas UNIFAL
dc.contributor.author.fl_str_mv Mannochio-Russo, Helena [UNESP]
Almeida, Rafael F. de
Nunes, Wilhan D. G.
Bueno, Paula C. P.
Caraballo-Rodriguez, Andres M.
Bauermeister, Anelize
Dorrestein, Pieter C.
Bolzani, Vanderlan S. [UNESP]
dc.subject.por.fl_str_mv Chemotaxonomy
Mass spectrometry
Metabolite annotation
Metabolomics
Evolution
Ancestral character reconstruction
Systematics
Malpighiales
topic Chemotaxonomy
Mass spectrometry
Metabolite annotation
Metabolomics
Evolution
Ancestral character reconstruction
Systematics
Malpighiales
description Natural products produced by plants are one of the most investigated natural sources, which substantially contributed to the development of the natural products field. Even though these compounds are widely explored, the literature still lacks comprehensive investigations aiming to explore the evolution of secondary metabolites produced by plants, especially if classical methodologies are employed. The development of sensitive hyphenated techniques and computational tools for data processing has enabled the study of large datasets, being valuable assets for chemosystematic studies. Here, we describe a strategy for chemotaxonomic investigations using the Malpighiaceae botanical family as a model. Our workflow was based on MS/MS untargeted metabolomics, spectral searches, and recently described in silico classification tools, which were mapped into the latest molecular phylogeny accepted for this family. The metabolomic analysis revealed that different ionization modes and extraction protocols significantly impacted the chemical profiles, influencing the chemotaxonomic results. Spectral searches within public databases revealed several clades or genera-specific molecular families, being potential chemical markers for these taxa, while the in silico classification tools were able to expand the Malpighiaceae chemical space. The classes putatively annotated were used for ancestral character reconstructions, which recovered several classes of metabolites as homoplasies (i.e., non-exclusive) or synapomorphies (i.e., exclusive) for all sampled clades and genera. Our workflow combines several approaches to perform a comprehensive evolutionary chemical study. We expect it to be used on further chemotaxonomic investigations to expand chemical knowledge and reveal biological insights for compounds classes in different biological groups.
publishDate 2022
dc.date.none.fl_str_mv 2022-11-30T13:43:13Z
2022-11-30T13:43:13Z
2022-04-14
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3389/fpls.2022.854842
Frontiers In Plant Science. Lausanne: Frontiers Media Sa, v. 13, 19 p., 2022.
1664-462X
http://hdl.handle.net/11449/237731
10.3389/fpls.2022.854842
WOS:000796351500001
url http://dx.doi.org/10.3389/fpls.2022.854842
http://hdl.handle.net/11449/237731
identifier_str_mv Frontiers In Plant Science. Lausanne: Frontiers Media Sa, v. 13, 19 p., 2022.
1664-462X
10.3389/fpls.2022.854842
WOS:000796351500001
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Frontiers In Plant Science
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 19
dc.publisher.none.fl_str_mv Frontiers Media Sa
publisher.none.fl_str_mv Frontiers Media Sa
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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