Genetic relationships among Arachis species based on AFLP

Detalhes bibliográficos
Autor(a) principal: Gimenes, Marcos A. [UNESP]
Data de Publicação: 2002
Outros Autores: Lopes, Catalina R. [UNESP], Valls, Jose F.M.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1590/S1415-47572002000300017
http://hdl.handle.net/11449/17937
Resumo: Amplified Fragment Length Polymorphism (AFLP) was used to establish the genetic relationships among 20 species from seven of the nine sections of genus Arachis. The level of polymorphism among nine accessions of the cultivated peanut, A. hypogaea L., was also evaluated. Three combinations of primers were used to amplify the AFLPs. The fragments were separated in 6% denaturing acrylamide gels. A total of 408 fragments were analyzed. An average of 135.3 fragments per primer combination were scored, and the largest number of fragments was 169 using primer combination Eco RI - ACC / Mse I - CTG, while the lowest was 108, with Eco RI - ACT / Mse I - CTT. In general, the genetic relationships established using AFLPs agreed with the classification established using morphology and crossability data. The results indicated that AFLPs are good markers for establishing the relationships among Arachis species. The polymorphism detected in A. hypogaea by this method was higher than the one found with other markers, like RAPDs and RFLPs. However, our data suggest that the polymorphism detected be using AFLP with only three primer combinations is still too low to be used for any kind of genetic study in this species.
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spelling Genetic relationships among Arachis species based on AFLPAFLPArachispeanuttaxonomic relationshipAmplified Fragment Length Polymorphism (AFLP) was used to establish the genetic relationships among 20 species from seven of the nine sections of genus Arachis. The level of polymorphism among nine accessions of the cultivated peanut, A. hypogaea L., was also evaluated. Three combinations of primers were used to amplify the AFLPs. The fragments were separated in 6% denaturing acrylamide gels. A total of 408 fragments were analyzed. An average of 135.3 fragments per primer combination were scored, and the largest number of fragments was 169 using primer combination Eco RI - ACC / Mse I - CTG, while the lowest was 108, with Eco RI - ACT / Mse I - CTT. In general, the genetic relationships established using AFLPs agreed with the classification established using morphology and crossability data. The results indicated that AFLPs are good markers for establishing the relationships among Arachis species. The polymorphism detected in A. hypogaea by this method was higher than the one found with other markers, like RAPDs and RFLPs. However, our data suggest that the polymorphism detected be using AFLP with only three primer combinations is still too low to be used for any kind of genetic study in this species.Universidade Estadual Paulista (UNESP) Departamento de GenéticaEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Recursos Genéticos e Biotecnologia (CENARGEN)Universidade Estadual Paulista (UNESP) Departamento de GenéticaSociedade Brasileira de GenéticaUniversidade Estadual Paulista (Unesp)Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Gimenes, Marcos A. [UNESP]Lopes, Catalina R. [UNESP]Valls, Jose F.M.2014-05-20T13:50:14Z2014-05-20T13:50:14Z2002-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article349-353application/pdfhttp://dx.doi.org/10.1590/S1415-47572002000300017Genetics and Molecular Biology. Sociedade Brasileira de Genética, v. 25, n. 3, p. 349-353, 2002.1415-4757http://hdl.handle.net/11449/1793710.1590/S1415-47572002000300017S1415-47572002000300017S1415-47572002000300017.pdfSciELOreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengGenetics and Molecular Biology1.4930,638info:eu-repo/semantics/openAccess2024-01-02T06:22:16Zoai:repositorio.unesp.br:11449/17937Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-01-02T06:22:16Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Genetic relationships among Arachis species based on AFLP
title Genetic relationships among Arachis species based on AFLP
spellingShingle Genetic relationships among Arachis species based on AFLP
Gimenes, Marcos A. [UNESP]
AFLP
Arachis
peanut
taxonomic relationship
title_short Genetic relationships among Arachis species based on AFLP
title_full Genetic relationships among Arachis species based on AFLP
title_fullStr Genetic relationships among Arachis species based on AFLP
title_full_unstemmed Genetic relationships among Arachis species based on AFLP
title_sort Genetic relationships among Arachis species based on AFLP
author Gimenes, Marcos A. [UNESP]
author_facet Gimenes, Marcos A. [UNESP]
Lopes, Catalina R. [UNESP]
Valls, Jose F.M.
author_role author
author2 Lopes, Catalina R. [UNESP]
Valls, Jose F.M.
author2_role author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)
dc.contributor.author.fl_str_mv Gimenes, Marcos A. [UNESP]
Lopes, Catalina R. [UNESP]
Valls, Jose F.M.
dc.subject.por.fl_str_mv AFLP
Arachis
peanut
taxonomic relationship
topic AFLP
Arachis
peanut
taxonomic relationship
description Amplified Fragment Length Polymorphism (AFLP) was used to establish the genetic relationships among 20 species from seven of the nine sections of genus Arachis. The level of polymorphism among nine accessions of the cultivated peanut, A. hypogaea L., was also evaluated. Three combinations of primers were used to amplify the AFLPs. The fragments were separated in 6% denaturing acrylamide gels. A total of 408 fragments were analyzed. An average of 135.3 fragments per primer combination were scored, and the largest number of fragments was 169 using primer combination Eco RI - ACC / Mse I - CTG, while the lowest was 108, with Eco RI - ACT / Mse I - CTT. In general, the genetic relationships established using AFLPs agreed with the classification established using morphology and crossability data. The results indicated that AFLPs are good markers for establishing the relationships among Arachis species. The polymorphism detected in A. hypogaea by this method was higher than the one found with other markers, like RAPDs and RFLPs. However, our data suggest that the polymorphism detected be using AFLP with only three primer combinations is still too low to be used for any kind of genetic study in this species.
publishDate 2002
dc.date.none.fl_str_mv 2002-01-01
2014-05-20T13:50:14Z
2014-05-20T13:50:14Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1590/S1415-47572002000300017
Genetics and Molecular Biology. Sociedade Brasileira de Genética, v. 25, n. 3, p. 349-353, 2002.
1415-4757
http://hdl.handle.net/11449/17937
10.1590/S1415-47572002000300017
S1415-47572002000300017
S1415-47572002000300017.pdf
url http://dx.doi.org/10.1590/S1415-47572002000300017
http://hdl.handle.net/11449/17937
identifier_str_mv Genetics and Molecular Biology. Sociedade Brasileira de Genética, v. 25, n. 3, p. 349-353, 2002.
1415-4757
10.1590/S1415-47572002000300017
S1415-47572002000300017
S1415-47572002000300017.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Genetics and Molecular Biology
1.493
0,638
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 349-353
application/pdf
dc.publisher.none.fl_str_mv Sociedade Brasileira de Genética
publisher.none.fl_str_mv Sociedade Brasileira de Genética
dc.source.none.fl_str_mv SciELO
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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