Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon

Detalhes bibliográficos
Autor(a) principal: Jaramillo,Paula Marcela Duque
Data de Publicação: 2013
Outros Autores: Guimarães,Amanda Azarias, Florentino,Ligiane Aparecida, Silva,Karina Barroso, Nóbrega,Rafaela Simão Abrahão, Moreira,Fatima Maria de Souza
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Scientia Agrícola (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162013000600004
Resumo: Cowpea (Vigna unguiculata) is an important grain-producing legume that can forego nitrogen fertilization by establishing an efficient symbiosis with nitrogen-fixing bacteria. Although inoculating strains have already been selected for this species, little is known about the genotypic and symbiotic diversity of native rhizobia. Recently, Bradyrhizobium has been shown to be the genus most frequently trapped by cowpea in agricultural soils of the Amazon region. We investigated the genetic and symbiotic diversity of 148 bacterial strains with different phenotypic and cultural properties isolated from the nodules of the trap species cowpea, which was inoculated with samples from soils under agroforestry systems from the western Amazon. Sixty non-nodulating strains indicated a high frequency of endophytic strains in the nodules. The 88 authenticated strains had varying symbiotic efficiency. The SPAD (Soil Plant Analysis Development) index (indirect measurement of chlorophyll content) was more efficient at evaluating the contribution of symbiotic N2-fixation than shoot dry matter under axenic conditions. Cowpea-nodulating bacteria exhibited a high level of genetic diversity, with 68 genotypes identified by BOX-PCR. Sequencing of the 16S rRNA gene showed a predominance of the genus Bradyrhizobium, which accounted for 70 % of all strains sequenced. Other genera identified were Rhizobium, Ochrobactrum, Paenibacillus, Bosea, Bacillus, Enterobacter, and Stenotrophomonas. These results support the promiscuity of cowpea and demonstrate the high genetic and symbiotic diversity of rhizobia in soils under agroforestry systems, with some strains exhibiting potential for use as inoculants. The predominance of Bradyrhizobium in land uses with different plant communities and soil characteristics reflects the adaptation of this genus to the Amazon region.
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spelling Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazonlegume-nodulating bacteriabiodiversitysymbiotic promiscuitychlorophyll contentCowpea (Vigna unguiculata) is an important grain-producing legume that can forego nitrogen fertilization by establishing an efficient symbiosis with nitrogen-fixing bacteria. Although inoculating strains have already been selected for this species, little is known about the genotypic and symbiotic diversity of native rhizobia. Recently, Bradyrhizobium has been shown to be the genus most frequently trapped by cowpea in agricultural soils of the Amazon region. We investigated the genetic and symbiotic diversity of 148 bacterial strains with different phenotypic and cultural properties isolated from the nodules of the trap species cowpea, which was inoculated with samples from soils under agroforestry systems from the western Amazon. Sixty non-nodulating strains indicated a high frequency of endophytic strains in the nodules. The 88 authenticated strains had varying symbiotic efficiency. The SPAD (Soil Plant Analysis Development) index (indirect measurement of chlorophyll content) was more efficient at evaluating the contribution of symbiotic N2-fixation than shoot dry matter under axenic conditions. Cowpea-nodulating bacteria exhibited a high level of genetic diversity, with 68 genotypes identified by BOX-PCR. Sequencing of the 16S rRNA gene showed a predominance of the genus Bradyrhizobium, which accounted for 70 % of all strains sequenced. Other genera identified were Rhizobium, Ochrobactrum, Paenibacillus, Bosea, Bacillus, Enterobacter, and Stenotrophomonas. These results support the promiscuity of cowpea and demonstrate the high genetic and symbiotic diversity of rhizobia in soils under agroforestry systems, with some strains exhibiting potential for use as inoculants. The predominance of Bradyrhizobium in land uses with different plant communities and soil characteristics reflects the adaptation of this genus to the Amazon region.Escola Superior de Agricultura "Luiz de Queiroz"2013-12-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162013000600004Scientia Agricola v.70 n.6 2013reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USP10.1590/S0103-90162013000600004info:eu-repo/semantics/openAccessJaramillo,Paula Marcela DuqueGuimarães,Amanda AzariasFlorentino,Ligiane AparecidaSilva,Karina BarrosoNóbrega,Rafaela Simão AbrahãoMoreira,Fatima Maria de Souzaeng2013-12-03T00:00:00Zoai:scielo:S0103-90162013000600004Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2013-12-03T00:00Scientia Agrícola (Online) - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon
title Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon
spellingShingle Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon
Jaramillo,Paula Marcela Duque
legume-nodulating bacteria
biodiversity
symbiotic promiscuity
chlorophyll content
title_short Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon
title_full Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon
title_fullStr Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon
title_full_unstemmed Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon
title_sort Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon
author Jaramillo,Paula Marcela Duque
author_facet Jaramillo,Paula Marcela Duque
Guimarães,Amanda Azarias
Florentino,Ligiane Aparecida
Silva,Karina Barroso
Nóbrega,Rafaela Simão Abrahão
Moreira,Fatima Maria de Souza
author_role author
author2 Guimarães,Amanda Azarias
Florentino,Ligiane Aparecida
Silva,Karina Barroso
Nóbrega,Rafaela Simão Abrahão
Moreira,Fatima Maria de Souza
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Jaramillo,Paula Marcela Duque
Guimarães,Amanda Azarias
Florentino,Ligiane Aparecida
Silva,Karina Barroso
Nóbrega,Rafaela Simão Abrahão
Moreira,Fatima Maria de Souza
dc.subject.por.fl_str_mv legume-nodulating bacteria
biodiversity
symbiotic promiscuity
chlorophyll content
topic legume-nodulating bacteria
biodiversity
symbiotic promiscuity
chlorophyll content
description Cowpea (Vigna unguiculata) is an important grain-producing legume that can forego nitrogen fertilization by establishing an efficient symbiosis with nitrogen-fixing bacteria. Although inoculating strains have already been selected for this species, little is known about the genotypic and symbiotic diversity of native rhizobia. Recently, Bradyrhizobium has been shown to be the genus most frequently trapped by cowpea in agricultural soils of the Amazon region. We investigated the genetic and symbiotic diversity of 148 bacterial strains with different phenotypic and cultural properties isolated from the nodules of the trap species cowpea, which was inoculated with samples from soils under agroforestry systems from the western Amazon. Sixty non-nodulating strains indicated a high frequency of endophytic strains in the nodules. The 88 authenticated strains had varying symbiotic efficiency. The SPAD (Soil Plant Analysis Development) index (indirect measurement of chlorophyll content) was more efficient at evaluating the contribution of symbiotic N2-fixation than shoot dry matter under axenic conditions. Cowpea-nodulating bacteria exhibited a high level of genetic diversity, with 68 genotypes identified by BOX-PCR. Sequencing of the 16S rRNA gene showed a predominance of the genus Bradyrhizobium, which accounted for 70 % of all strains sequenced. Other genera identified were Rhizobium, Ochrobactrum, Paenibacillus, Bosea, Bacillus, Enterobacter, and Stenotrophomonas. These results support the promiscuity of cowpea and demonstrate the high genetic and symbiotic diversity of rhizobia in soils under agroforestry systems, with some strains exhibiting potential for use as inoculants. The predominance of Bradyrhizobium in land uses with different plant communities and soil characteristics reflects the adaptation of this genus to the Amazon region.
publishDate 2013
dc.date.none.fl_str_mv 2013-12-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162013000600004
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162013000600004
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S0103-90162013000600004
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Escola Superior de Agricultura "Luiz de Queiroz"
publisher.none.fl_str_mv Escola Superior de Agricultura "Luiz de Queiroz"
dc.source.none.fl_str_mv Scientia Agricola v.70 n.6 2013
reponame:Scientia Agrícola (Online)
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Scientia Agrícola (Online)
collection Scientia Agrícola (Online)
repository.name.fl_str_mv Scientia Agrícola (Online) - Universidade de São Paulo (USP)
repository.mail.fl_str_mv scientia@usp.br||alleoni@usp.br
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