Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon
Autor(a) principal: | |
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Data de Publicação: | 2013 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Scientia Agrícola (Online) |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162013000600004 |
Resumo: | Cowpea (Vigna unguiculata) is an important grain-producing legume that can forego nitrogen fertilization by establishing an efficient symbiosis with nitrogen-fixing bacteria. Although inoculating strains have already been selected for this species, little is known about the genotypic and symbiotic diversity of native rhizobia. Recently, Bradyrhizobium has been shown to be the genus most frequently trapped by cowpea in agricultural soils of the Amazon region. We investigated the genetic and symbiotic diversity of 148 bacterial strains with different phenotypic and cultural properties isolated from the nodules of the trap species cowpea, which was inoculated with samples from soils under agroforestry systems from the western Amazon. Sixty non-nodulating strains indicated a high frequency of endophytic strains in the nodules. The 88 authenticated strains had varying symbiotic efficiency. The SPAD (Soil Plant Analysis Development) index (indirect measurement of chlorophyll content) was more efficient at evaluating the contribution of symbiotic N2-fixation than shoot dry matter under axenic conditions. Cowpea-nodulating bacteria exhibited a high level of genetic diversity, with 68 genotypes identified by BOX-PCR. Sequencing of the 16S rRNA gene showed a predominance of the genus Bradyrhizobium, which accounted for 70 % of all strains sequenced. Other genera identified were Rhizobium, Ochrobactrum, Paenibacillus, Bosea, Bacillus, Enterobacter, and Stenotrophomonas. These results support the promiscuity of cowpea and demonstrate the high genetic and symbiotic diversity of rhizobia in soils under agroforestry systems, with some strains exhibiting potential for use as inoculants. The predominance of Bradyrhizobium in land uses with different plant communities and soil characteristics reflects the adaptation of this genus to the Amazon region. |
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Scientia Agrícola (Online) |
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Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazonlegume-nodulating bacteriabiodiversitysymbiotic promiscuitychlorophyll contentCowpea (Vigna unguiculata) is an important grain-producing legume that can forego nitrogen fertilization by establishing an efficient symbiosis with nitrogen-fixing bacteria. Although inoculating strains have already been selected for this species, little is known about the genotypic and symbiotic diversity of native rhizobia. Recently, Bradyrhizobium has been shown to be the genus most frequently trapped by cowpea in agricultural soils of the Amazon region. We investigated the genetic and symbiotic diversity of 148 bacterial strains with different phenotypic and cultural properties isolated from the nodules of the trap species cowpea, which was inoculated with samples from soils under agroforestry systems from the western Amazon. Sixty non-nodulating strains indicated a high frequency of endophytic strains in the nodules. The 88 authenticated strains had varying symbiotic efficiency. The SPAD (Soil Plant Analysis Development) index (indirect measurement of chlorophyll content) was more efficient at evaluating the contribution of symbiotic N2-fixation than shoot dry matter under axenic conditions. Cowpea-nodulating bacteria exhibited a high level of genetic diversity, with 68 genotypes identified by BOX-PCR. Sequencing of the 16S rRNA gene showed a predominance of the genus Bradyrhizobium, which accounted for 70 % of all strains sequenced. Other genera identified were Rhizobium, Ochrobactrum, Paenibacillus, Bosea, Bacillus, Enterobacter, and Stenotrophomonas. These results support the promiscuity of cowpea and demonstrate the high genetic and symbiotic diversity of rhizobia in soils under agroforestry systems, with some strains exhibiting potential for use as inoculants. The predominance of Bradyrhizobium in land uses with different plant communities and soil characteristics reflects the adaptation of this genus to the Amazon region.Escola Superior de Agricultura "Luiz de Queiroz"2013-12-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162013000600004Scientia Agricola v.70 n.6 2013reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USP10.1590/S0103-90162013000600004info:eu-repo/semantics/openAccessJaramillo,Paula Marcela DuqueGuimarães,Amanda AzariasFlorentino,Ligiane AparecidaSilva,Karina BarrosoNóbrega,Rafaela Simão AbrahãoMoreira,Fatima Maria de Souzaeng2013-12-03T00:00:00Zoai:scielo:S0103-90162013000600004Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2013-12-03T00:00Scientia Agrícola (Online) - Universidade de São Paulo (USP)false |
dc.title.none.fl_str_mv |
Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon |
title |
Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon |
spellingShingle |
Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon Jaramillo,Paula Marcela Duque legume-nodulating bacteria biodiversity symbiotic promiscuity chlorophyll content |
title_short |
Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon |
title_full |
Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon |
title_fullStr |
Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon |
title_full_unstemmed |
Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon |
title_sort |
Symbiotic nitrogen-fixing bacterial populations trapped from soils under agroforestry systems in the Western Amazon |
author |
Jaramillo,Paula Marcela Duque |
author_facet |
Jaramillo,Paula Marcela Duque Guimarães,Amanda Azarias Florentino,Ligiane Aparecida Silva,Karina Barroso Nóbrega,Rafaela Simão Abrahão Moreira,Fatima Maria de Souza |
author_role |
author |
author2 |
Guimarães,Amanda Azarias Florentino,Ligiane Aparecida Silva,Karina Barroso Nóbrega,Rafaela Simão Abrahão Moreira,Fatima Maria de Souza |
author2_role |
author author author author author |
dc.contributor.author.fl_str_mv |
Jaramillo,Paula Marcela Duque Guimarães,Amanda Azarias Florentino,Ligiane Aparecida Silva,Karina Barroso Nóbrega,Rafaela Simão Abrahão Moreira,Fatima Maria de Souza |
dc.subject.por.fl_str_mv |
legume-nodulating bacteria biodiversity symbiotic promiscuity chlorophyll content |
topic |
legume-nodulating bacteria biodiversity symbiotic promiscuity chlorophyll content |
description |
Cowpea (Vigna unguiculata) is an important grain-producing legume that can forego nitrogen fertilization by establishing an efficient symbiosis with nitrogen-fixing bacteria. Although inoculating strains have already been selected for this species, little is known about the genotypic and symbiotic diversity of native rhizobia. Recently, Bradyrhizobium has been shown to be the genus most frequently trapped by cowpea in agricultural soils of the Amazon region. We investigated the genetic and symbiotic diversity of 148 bacterial strains with different phenotypic and cultural properties isolated from the nodules of the trap species cowpea, which was inoculated with samples from soils under agroforestry systems from the western Amazon. Sixty non-nodulating strains indicated a high frequency of endophytic strains in the nodules. The 88 authenticated strains had varying symbiotic efficiency. The SPAD (Soil Plant Analysis Development) index (indirect measurement of chlorophyll content) was more efficient at evaluating the contribution of symbiotic N2-fixation than shoot dry matter under axenic conditions. Cowpea-nodulating bacteria exhibited a high level of genetic diversity, with 68 genotypes identified by BOX-PCR. Sequencing of the 16S rRNA gene showed a predominance of the genus Bradyrhizobium, which accounted for 70 % of all strains sequenced. Other genera identified were Rhizobium, Ochrobactrum, Paenibacillus, Bosea, Bacillus, Enterobacter, and Stenotrophomonas. These results support the promiscuity of cowpea and demonstrate the high genetic and symbiotic diversity of rhizobia in soils under agroforestry systems, with some strains exhibiting potential for use as inoculants. The predominance of Bradyrhizobium in land uses with different plant communities and soil characteristics reflects the adaptation of this genus to the Amazon region. |
publishDate |
2013 |
dc.date.none.fl_str_mv |
2013-12-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162013000600004 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162013000600004 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.1590/S0103-90162013000600004 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Escola Superior de Agricultura "Luiz de Queiroz" |
publisher.none.fl_str_mv |
Escola Superior de Agricultura "Luiz de Queiroz" |
dc.source.none.fl_str_mv |
Scientia Agricola v.70 n.6 2013 reponame:Scientia Agrícola (Online) instname:Universidade de São Paulo (USP) instacron:USP |
instname_str |
Universidade de São Paulo (USP) |
instacron_str |
USP |
institution |
USP |
reponame_str |
Scientia Agrícola (Online) |
collection |
Scientia Agrícola (Online) |
repository.name.fl_str_mv |
Scientia Agrícola (Online) - Universidade de São Paulo (USP) |
repository.mail.fl_str_mv |
scientia@usp.br||alleoni@usp.br |
_version_ |
1748936463277359104 |