Dissecting the Opaque-2 regulatory network using transcriptome and proteome approaches along with enzyme activity measurements

Detalhes bibliográficos
Autor(a) principal: Lefèvre,Agnès
Data de Publicação: 2002
Outros Autores: Consoli,Luciano, Gaziola,Salete A., Pellegrino,Ana Paula, Azevedo,Ricardo A., Damerval,Catherine
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Scientia Agrícola (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162002000200031
Resumo: The Opaque-2 (O2) gene encodes a transcriptional activator specifically expressed for grain development of maize. o2 mutants have an opaque and chalky kernel, with a decrease in zein storage protein content, and an increase in the proportions of lysine and tryptophan. In this review, we present recent results investigating genetic properties of the O2 network, using transcriptome and proteome approaches, associated with measurements of activities of enzymes of the aspartate pathway and lysine degradation. The structural polymorphism at the O2 locus was investigated by RFLP in a collection of 51 maize inbred lines. Most polymorphic sites were found outside the coding regions. We then searched for relationships between RFLP polymorphism and (i) mRNA abundance of O2 and of known or suspected target genes, (ii) activity of SDH and (iii) amount of zein isoforms. Polymorphic restriction sites in the 5' upstream regions of the O2 gene were found associated with O2 mRNA abundance (three sites) and the amount of two 19 kDa alpha-zein isoforms (two sites). One restriction site on the 3' side of the O2 gene was found associated with Lor/Sdh mRNA abundance. Our results indicate relationships between polymorphism at the O2 locus and the expression of some of its target genes. Evidence of these associations has to be confirmed on larger samples, and the analysis of the O2 gene sequence should allow more precise testing of the actual involvement of O2 polymorphism in its own transcriptional expression, and in the expression of its target genes.
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spelling Dissecting the Opaque-2 regulatory network using transcriptome and proteome approaches along with enzyme activity measurementszeinaspartate kinaselysine oxoglutarate reductase/saccharopine dehydrogenasepolymorphismThe Opaque-2 (O2) gene encodes a transcriptional activator specifically expressed for grain development of maize. o2 mutants have an opaque and chalky kernel, with a decrease in zein storage protein content, and an increase in the proportions of lysine and tryptophan. In this review, we present recent results investigating genetic properties of the O2 network, using transcriptome and proteome approaches, associated with measurements of activities of enzymes of the aspartate pathway and lysine degradation. The structural polymorphism at the O2 locus was investigated by RFLP in a collection of 51 maize inbred lines. Most polymorphic sites were found outside the coding regions. We then searched for relationships between RFLP polymorphism and (i) mRNA abundance of O2 and of known or suspected target genes, (ii) activity of SDH and (iii) amount of zein isoforms. Polymorphic restriction sites in the 5' upstream regions of the O2 gene were found associated with O2 mRNA abundance (three sites) and the amount of two 19 kDa alpha-zein isoforms (two sites). One restriction site on the 3' side of the O2 gene was found associated with Lor/Sdh mRNA abundance. Our results indicate relationships between polymorphism at the O2 locus and the expression of some of its target genes. Evidence of these associations has to be confirmed on larger samples, and the analysis of the O2 gene sequence should allow more precise testing of the actual involvement of O2 polymorphism in its own transcriptional expression, and in the expression of its target genes.Escola Superior de Agricultura "Luiz de Queiroz"2002-06-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162002000200031Scientia Agricola v.59 n.2 2002reponame:Scientia Agrícola (Online)instname:Universidade de São Paulo (USP)instacron:USP10.1590/S0103-90162002000200031info:eu-repo/semantics/openAccessLefèvre,AgnèsConsoli,LucianoGaziola,Salete A.Pellegrino,Ana PaulaAzevedo,Ricardo A.Damerval,Catherineeng2002-10-03T00:00:00Zoai:scielo:S0103-90162002000200031Revistahttp://revistas.usp.br/sa/indexPUBhttps://old.scielo.br/oai/scielo-oai.phpscientia@usp.br||alleoni@usp.br1678-992X0103-9016opendoar:2002-10-03T00:00Scientia Agrícola (Online) - Universidade de São Paulo (USP)false
dc.title.none.fl_str_mv Dissecting the Opaque-2 regulatory network using transcriptome and proteome approaches along with enzyme activity measurements
title Dissecting the Opaque-2 regulatory network using transcriptome and proteome approaches along with enzyme activity measurements
spellingShingle Dissecting the Opaque-2 regulatory network using transcriptome and proteome approaches along with enzyme activity measurements
Lefèvre,Agnès
zein
aspartate kinase
lysine oxoglutarate reductase/saccharopine dehydrogenase
polymorphism
title_short Dissecting the Opaque-2 regulatory network using transcriptome and proteome approaches along with enzyme activity measurements
title_full Dissecting the Opaque-2 regulatory network using transcriptome and proteome approaches along with enzyme activity measurements
title_fullStr Dissecting the Opaque-2 regulatory network using transcriptome and proteome approaches along with enzyme activity measurements
title_full_unstemmed Dissecting the Opaque-2 regulatory network using transcriptome and proteome approaches along with enzyme activity measurements
title_sort Dissecting the Opaque-2 regulatory network using transcriptome and proteome approaches along with enzyme activity measurements
author Lefèvre,Agnès
author_facet Lefèvre,Agnès
Consoli,Luciano
Gaziola,Salete A.
Pellegrino,Ana Paula
Azevedo,Ricardo A.
Damerval,Catherine
author_role author
author2 Consoli,Luciano
Gaziola,Salete A.
Pellegrino,Ana Paula
Azevedo,Ricardo A.
Damerval,Catherine
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Lefèvre,Agnès
Consoli,Luciano
Gaziola,Salete A.
Pellegrino,Ana Paula
Azevedo,Ricardo A.
Damerval,Catherine
dc.subject.por.fl_str_mv zein
aspartate kinase
lysine oxoglutarate reductase/saccharopine dehydrogenase
polymorphism
topic zein
aspartate kinase
lysine oxoglutarate reductase/saccharopine dehydrogenase
polymorphism
description The Opaque-2 (O2) gene encodes a transcriptional activator specifically expressed for grain development of maize. o2 mutants have an opaque and chalky kernel, with a decrease in zein storage protein content, and an increase in the proportions of lysine and tryptophan. In this review, we present recent results investigating genetic properties of the O2 network, using transcriptome and proteome approaches, associated with measurements of activities of enzymes of the aspartate pathway and lysine degradation. The structural polymorphism at the O2 locus was investigated by RFLP in a collection of 51 maize inbred lines. Most polymorphic sites were found outside the coding regions. We then searched for relationships between RFLP polymorphism and (i) mRNA abundance of O2 and of known or suspected target genes, (ii) activity of SDH and (iii) amount of zein isoforms. Polymorphic restriction sites in the 5' upstream regions of the O2 gene were found associated with O2 mRNA abundance (three sites) and the amount of two 19 kDa alpha-zein isoforms (two sites). One restriction site on the 3' side of the O2 gene was found associated with Lor/Sdh mRNA abundance. Our results indicate relationships between polymorphism at the O2 locus and the expression of some of its target genes. Evidence of these associations has to be confirmed on larger samples, and the analysis of the O2 gene sequence should allow more precise testing of the actual involvement of O2 polymorphism in its own transcriptional expression, and in the expression of its target genes.
publishDate 2002
dc.date.none.fl_str_mv 2002-06-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162002000200031
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162002000200031
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/S0103-90162002000200031
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Escola Superior de Agricultura "Luiz de Queiroz"
publisher.none.fl_str_mv Escola Superior de Agricultura "Luiz de Queiroz"
dc.source.none.fl_str_mv Scientia Agricola v.59 n.2 2002
reponame:Scientia Agrícola (Online)
instname:Universidade de São Paulo (USP)
instacron:USP
instname_str Universidade de São Paulo (USP)
instacron_str USP
institution USP
reponame_str Scientia Agrícola (Online)
collection Scientia Agrícola (Online)
repository.name.fl_str_mv Scientia Agrícola (Online) - Universidade de São Paulo (USP)
repository.mail.fl_str_mv scientia@usp.br||alleoni@usp.br
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