Estudos in silico aplicados a compostos orgânicos de mercúrio e selênio em sistemas biológicos

Detalhes bibliográficos
Autor(a) principal: Nogara, Pablo Andrei
Data de Publicação: 2020
Tipo de documento: Tese
Idioma: por
Título da fonte: Manancial - Repositório Digital da UFSM
Texto Completo: http://repositorio.ufsm.br/handle/1/22033
Resumo: Methylmercury (MeHg) is a potent neurotoxin, which is associated with the inhibition of Glutathione Peroxidase (GPx) and Thioredoxin Reductase (TrxR) selenozymes, however, the mechanism of MeHg inhibition, at the molecular level, need to be elucidated. Organic selenium compounds, such as Ebselen (Ebs) and diphenyl diselenide (DPDSe), have shown promising results against MeHg toxicity. On the other hand, organoselenium compounds can also be considered toxic, since they are able to oxidize the thiol groups from the mammalian δ-aminolevulinic acid dehydratase (δ-AlaD). The use of in silico tools, such as molecular docking, homology modeling, and DFT calculations are important because they allow analysis at the molecular level. In addition, new synthetic molecules can be designed and virtually tested. Thus, the present work aims to understand, at the molecular level, the chemical interactions involved between organoselenium and MeHg molecules with their biological targets, as well as, to propose new and more effective compounds. The results of molecular docking with GPx and TrxR demonstrated that MeHg is capable of interacting in its active sites, where a nucleophilic attack from selenocysteine residue (Sec), could lead to the formation of the Sec-SeHgMe adduct, inhibiting the enzymes. DFT calculations suggest that Sec-SeHgMe could undergo β-elimination, leading to the dehydroalanine (Dha). The interactions between organoselenium compounds and δ-AlaD showed that selenoxides are more reactive than their respective selenides, and they have Zn...O coordination, which could facilitate the attack of the Cys124 thiolate on the Se atom. New compounds, such as pyridinyl(quinolyl)-thio(seleno)semicarbazides and Ebs derivatives are proposed for therapeutic purposes. These data help us to understand the toxicology of MeHg and organoselenium molecules and can guide the development of new Hg chelating agents with high selectivity and with less adverse effects.
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spelling Estudos in silico aplicados a compostos orgânicos de mercúrio e selênio em sistemas biológicosIn silico studies applied to organic compounds of mercury and selenium in biological systemsDocagemSelenoproteínasMetilmercúrioDFTModelagem por homologiaMolecular dockingSelenoproteinsMethylmercuryHomology modelingCNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICAMethylmercury (MeHg) is a potent neurotoxin, which is associated with the inhibition of Glutathione Peroxidase (GPx) and Thioredoxin Reductase (TrxR) selenozymes, however, the mechanism of MeHg inhibition, at the molecular level, need to be elucidated. Organic selenium compounds, such as Ebselen (Ebs) and diphenyl diselenide (DPDSe), have shown promising results against MeHg toxicity. On the other hand, organoselenium compounds can also be considered toxic, since they are able to oxidize the thiol groups from the mammalian δ-aminolevulinic acid dehydratase (δ-AlaD). The use of in silico tools, such as molecular docking, homology modeling, and DFT calculations are important because they allow analysis at the molecular level. In addition, new synthetic molecules can be designed and virtually tested. Thus, the present work aims to understand, at the molecular level, the chemical interactions involved between organoselenium and MeHg molecules with their biological targets, as well as, to propose new and more effective compounds. The results of molecular docking with GPx and TrxR demonstrated that MeHg is capable of interacting in its active sites, where a nucleophilic attack from selenocysteine residue (Sec), could lead to the formation of the Sec-SeHgMe adduct, inhibiting the enzymes. DFT calculations suggest that Sec-SeHgMe could undergo β-elimination, leading to the dehydroalanine (Dha). The interactions between organoselenium compounds and δ-AlaD showed that selenoxides are more reactive than their respective selenides, and they have Zn...O coordination, which could facilitate the attack of the Cys124 thiolate on the Se atom. New compounds, such as pyridinyl(quinolyl)-thio(seleno)semicarbazides and Ebs derivatives are proposed for therapeutic purposes. These data help us to understand the toxicology of MeHg and organoselenium molecules and can guide the development of new Hg chelating agents with high selectivity and with less adverse effects.Conselho Nacional de Pesquisa e Desenvolvimento Científico e Tecnológico - CNPqCoordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESFundação de Amparo à Pesquisa do Estado do Rio Grande do Sul - FAPERGSO metilmercúrio (MeHg) é uma potente neurotoxina, associado à inibição das selenoenzimas Glutationa Peroxidase (GPx) e Tioredoxina Redutase (TrxR), no entanto, o mecanismo de inibição do MeHg a nível molecular ainda precisa ser elucidado. Compostos orgânicos de Se, como o Ebselen (Ebs) e o disseleneto de difenila (DPDSe), têm demonstrado resultados promissores contra o toxicidade do MeHg. Por outro lado, os organosselênios também podem ser considerados tóxicos, uma vez que oxidam os grupos tióis proteicos da enzima ácido δ-aminolevulínico desidratase de mamífero (δ-AlaD). O uso de ferramentas in silico, tais como docking molecular, modelagem por homologia, e cálculos DFT são importantes, pois permitem uma análise a nível molecular. Além disso, novos moléculas sintéticas podem ser planejadas e virtualmente testadas. Assim, o presente trabalho tem o objetivo de compreender, à nível molecular, as interações químicas envolvidas entre organosselênios e MeHg com seus alvos biológicos, bem como propor novos compostos. Os resultados de docking molecular com a GPx e TrxR demonstraram que o MeHg é capaz de interagir nos seus sítio ativos, onde um ataque nucleofilico do resíduo de selenocisteina (Sec), poderia levar a formação do aduto Sec-SeHgMe, inibindo as enzimas. Os cálculos de DFT sugerem que Sec-SeHgMe poderia sofrer uma β-eliminação, formando assim a desidroalanina (Dha). Já as interações entre organosselênios e δ-AlaD mostraram que os selenóxidos, além de mais reativos que seus respectivos selenetos, possuem uma coordenação Zn...O o que poderia facilitar o ataque do tiolato da Cys124 ao átomo de Se. Por fim, novos compostos tio(seleno)semicarbazidas e derivados do Ebs são propostos para fins terapêuticos. Esses dados auxiliam no entendimento da toxicologia do MeHg e organosselênios, e podem guiar o desenvolvimento de futuros agentes quelantes de Hg com alta seletividade e com menor efeitos adversos.Universidade Federal de Santa MariaBrasilBioquímicaUFSMPrograma de Pós-Graduação em Ciências Biológicas: Bioquímica ToxicológicaCentro de Ciências Naturais e ExatasRocha, João Batista Teixeira dahttp://lattes.cnpq.br/3935055744673018Andricopulo, Adriano DefiniDalla Corte, Cristiane LenzMachado, Karina dos SantosRodrigues, Oscar Endrigo DornelesNogara, Pablo Andrei2021-08-23T20:18:10Z2021-08-23T20:18:10Z2020-08-10info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/doctoralThesisapplication/pdfhttp://repositorio.ufsm.br/handle/1/22033porAttribution-NonCommercial-NoDerivatives 4.0 Internationalhttp://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessreponame:Manancial - Repositório Digital da UFSMinstname:Universidade Federal de Santa Maria (UFSM)instacron:UFSM2021-08-24T06:03:00Zoai:repositorio.ufsm.br:1/22033Biblioteca Digital de Teses e Dissertaçõeshttps://repositorio.ufsm.br/ONGhttps://repositorio.ufsm.br/oai/requestatendimento.sib@ufsm.br||tedebc@gmail.comopendoar:2021-08-24T06:03Manancial - Repositório Digital da UFSM - Universidade Federal de Santa Maria (UFSM)false
dc.title.none.fl_str_mv Estudos in silico aplicados a compostos orgânicos de mercúrio e selênio em sistemas biológicos
In silico studies applied to organic compounds of mercury and selenium in biological systems
title Estudos in silico aplicados a compostos orgânicos de mercúrio e selênio em sistemas biológicos
spellingShingle Estudos in silico aplicados a compostos orgânicos de mercúrio e selênio em sistemas biológicos
Nogara, Pablo Andrei
Docagem
Selenoproteínas
Metilmercúrio
DFT
Modelagem por homologia
Molecular docking
Selenoproteins
Methylmercury
Homology modeling
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA
title_short Estudos in silico aplicados a compostos orgânicos de mercúrio e selênio em sistemas biológicos
title_full Estudos in silico aplicados a compostos orgânicos de mercúrio e selênio em sistemas biológicos
title_fullStr Estudos in silico aplicados a compostos orgânicos de mercúrio e selênio em sistemas biológicos
title_full_unstemmed Estudos in silico aplicados a compostos orgânicos de mercúrio e selênio em sistemas biológicos
title_sort Estudos in silico aplicados a compostos orgânicos de mercúrio e selênio em sistemas biológicos
author Nogara, Pablo Andrei
author_facet Nogara, Pablo Andrei
author_role author
dc.contributor.none.fl_str_mv Rocha, João Batista Teixeira da
http://lattes.cnpq.br/3935055744673018
Andricopulo, Adriano Defini
Dalla Corte, Cristiane Lenz
Machado, Karina dos Santos
Rodrigues, Oscar Endrigo Dorneles
dc.contributor.author.fl_str_mv Nogara, Pablo Andrei
dc.subject.por.fl_str_mv Docagem
Selenoproteínas
Metilmercúrio
DFT
Modelagem por homologia
Molecular docking
Selenoproteins
Methylmercury
Homology modeling
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA
topic Docagem
Selenoproteínas
Metilmercúrio
DFT
Modelagem por homologia
Molecular docking
Selenoproteins
Methylmercury
Homology modeling
CNPQ::CIENCIAS BIOLOGICAS::BIOQUIMICA
description Methylmercury (MeHg) is a potent neurotoxin, which is associated with the inhibition of Glutathione Peroxidase (GPx) and Thioredoxin Reductase (TrxR) selenozymes, however, the mechanism of MeHg inhibition, at the molecular level, need to be elucidated. Organic selenium compounds, such as Ebselen (Ebs) and diphenyl diselenide (DPDSe), have shown promising results against MeHg toxicity. On the other hand, organoselenium compounds can also be considered toxic, since they are able to oxidize the thiol groups from the mammalian δ-aminolevulinic acid dehydratase (δ-AlaD). The use of in silico tools, such as molecular docking, homology modeling, and DFT calculations are important because they allow analysis at the molecular level. In addition, new synthetic molecules can be designed and virtually tested. Thus, the present work aims to understand, at the molecular level, the chemical interactions involved between organoselenium and MeHg molecules with their biological targets, as well as, to propose new and more effective compounds. The results of molecular docking with GPx and TrxR demonstrated that MeHg is capable of interacting in its active sites, where a nucleophilic attack from selenocysteine residue (Sec), could lead to the formation of the Sec-SeHgMe adduct, inhibiting the enzymes. DFT calculations suggest that Sec-SeHgMe could undergo β-elimination, leading to the dehydroalanine (Dha). The interactions between organoselenium compounds and δ-AlaD showed that selenoxides are more reactive than their respective selenides, and they have Zn...O coordination, which could facilitate the attack of the Cys124 thiolate on the Se atom. New compounds, such as pyridinyl(quinolyl)-thio(seleno)semicarbazides and Ebs derivatives are proposed for therapeutic purposes. These data help us to understand the toxicology of MeHg and organoselenium molecules and can guide the development of new Hg chelating agents with high selectivity and with less adverse effects.
publishDate 2020
dc.date.none.fl_str_mv 2020-08-10
2021-08-23T20:18:10Z
2021-08-23T20:18:10Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/doctoralThesis
format doctoralThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://repositorio.ufsm.br/handle/1/22033
url http://repositorio.ufsm.br/handle/1/22033
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivatives 4.0 International
http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal de Santa Maria
Brasil
Bioquímica
UFSM
Programa de Pós-Graduação em Ciências Biológicas: Bioquímica Toxicológica
Centro de Ciências Naturais e Exatas
publisher.none.fl_str_mv Universidade Federal de Santa Maria
Brasil
Bioquímica
UFSM
Programa de Pós-Graduação em Ciências Biológicas: Bioquímica Toxicológica
Centro de Ciências Naturais e Exatas
dc.source.none.fl_str_mv reponame:Manancial - Repositório Digital da UFSM
instname:Universidade Federal de Santa Maria (UFSM)
instacron:UFSM
instname_str Universidade Federal de Santa Maria (UFSM)
instacron_str UFSM
institution UFSM
reponame_str Manancial - Repositório Digital da UFSM
collection Manancial - Repositório Digital da UFSM
repository.name.fl_str_mv Manancial - Repositório Digital da UFSM - Universidade Federal de Santa Maria (UFSM)
repository.mail.fl_str_mv atendimento.sib@ufsm.br||tedebc@gmail.com
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