Genetic variation detected by RAPD markers in natural populations of babassu palm (Attalea speciosa Mart.).

Detalhes bibliográficos
Autor(a) principal: SANTOS, M. F.
Data de Publicação: 2015
Outros Autores: SILVA, K. J. D. e, CARVALHAES, M. A., LIMA, P. S. da C.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1017655
http://dx.doi.org/10.4238/2015.June.8.10
Resumo: The purpose of this study was to analyze the effects of management on the genetic structure of natural populations of Attalea speciosa in the State of Piauí, Brazil, using random-amplified polymorphic DNA (RAPD) markers. Three babassu populations under different management systems were selected. Polymerase chain reactions were performed for 20 RAPD primers. A total of 146 bands were generated, 141 of which were polymorphic (96.58%), with a variation of 4 and 12 loci and an average of 7 bands per primer. A dendrogram revealed a clear separation between the three populations (0.57). Data reliability and node consistency were verified by bootstrap values and the cophenetic correlation coefficient (88.15%). Coefficients of similarity between pairs of genotypes ranged from 0.26 to 0.86, with a mean of 0.57. Nei?s genetic diversity index (HE) value of the population sampled in Teresina was 0.212, of Esperantina it was 0.195, and of José de Freitas it was 0.207. After the HE was decomposed, the complete diversity was found to be 0.3213. Genetic differentiation between populations was0.362, and the estimation of gene flow between populations was low (0.879). Analysis of molecular variance revealed that 59.52% of the variation was contained within populations, and 40.48% was between populations. RAPD markers were effective for genetic diversity analysis within and between natural babassu populations, and exhibited a high level of polymorphism. Genetic diversity was the highest within populations; variability was lower in the managed populations than in the undisturbed populations.
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spelling Genetic variation detected by RAPD markers in natural populations of babassu palm (Attalea speciosa Mart.).Diversidade genéticaManejo populacionalCoeficiente de similaridadeGenetic diversityPalm treePopulation managementSimilarity coefficientsPalmeira oleaginosaBabaçuThe purpose of this study was to analyze the effects of management on the genetic structure of natural populations of Attalea speciosa in the State of Piauí, Brazil, using random-amplified polymorphic DNA (RAPD) markers. Three babassu populations under different management systems were selected. Polymerase chain reactions were performed for 20 RAPD primers. A total of 146 bands were generated, 141 of which were polymorphic (96.58%), with a variation of 4 and 12 loci and an average of 7 bands per primer. A dendrogram revealed a clear separation between the three populations (0.57). Data reliability and node consistency were verified by bootstrap values and the cophenetic correlation coefficient (88.15%). Coefficients of similarity between pairs of genotypes ranged from 0.26 to 0.86, with a mean of 0.57. Nei?s genetic diversity index (HE) value of the population sampled in Teresina was 0.212, of Esperantina it was 0.195, and of José de Freitas it was 0.207. After the HE was decomposed, the complete diversity was found to be 0.3213. Genetic differentiation between populations was0.362, and the estimation of gene flow between populations was low (0.879). Analysis of molecular variance revealed that 59.52% of the variation was contained within populations, and 40.48% was between populations. RAPD markers were effective for genetic diversity analysis within and between natural babassu populations, and exhibited a high level of polymorphism. Genetic diversity was the highest within populations; variability was lower in the managed populations than in the undisturbed populations.M. F. SANTOS, Universidade Federal do Piauí.; KAESEL JACKSON DAMASCENO E SILVA, CPAMN; MARIANA APARECIDA CARVALHAES, CPAMN; PAULO SARMANHO DA COSTA LIMA, CPAMN.SANTOS, M. F.SILVA, K. J. D. eCARVALHAES, M. A.LIMA, P. S. da C.2015-06-15T11:11:11Z2015-06-15T11:11:11Z2015-06-1520152015-06-15T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Research, Ribeirão Preto, v. 14, n. 2, p. 6124-6135, June 2015.1678-4685http://www.alice.cnptia.embrapa.br/alice/handle/doc/1017655http://dx.doi.org/10.4238/2015.June.8.10enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T02:22:34Zoai:www.alice.cnptia.embrapa.br:doc/1017655Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T02:22:34falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T02:22:34Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Genetic variation detected by RAPD markers in natural populations of babassu palm (Attalea speciosa Mart.).
title Genetic variation detected by RAPD markers in natural populations of babassu palm (Attalea speciosa Mart.).
spellingShingle Genetic variation detected by RAPD markers in natural populations of babassu palm (Attalea speciosa Mart.).
SANTOS, M. F.
Diversidade genética
Manejo populacional
Coeficiente de similaridade
Genetic diversity
Palm tree
Population management
Similarity coefficients
Palmeira oleaginosa
Babaçu
title_short Genetic variation detected by RAPD markers in natural populations of babassu palm (Attalea speciosa Mart.).
title_full Genetic variation detected by RAPD markers in natural populations of babassu palm (Attalea speciosa Mart.).
title_fullStr Genetic variation detected by RAPD markers in natural populations of babassu palm (Attalea speciosa Mart.).
title_full_unstemmed Genetic variation detected by RAPD markers in natural populations of babassu palm (Attalea speciosa Mart.).
title_sort Genetic variation detected by RAPD markers in natural populations of babassu palm (Attalea speciosa Mart.).
author SANTOS, M. F.
author_facet SANTOS, M. F.
SILVA, K. J. D. e
CARVALHAES, M. A.
LIMA, P. S. da C.
author_role author
author2 SILVA, K. J. D. e
CARVALHAES, M. A.
LIMA, P. S. da C.
author2_role author
author
author
dc.contributor.none.fl_str_mv M. F. SANTOS, Universidade Federal do Piauí.; KAESEL JACKSON DAMASCENO E SILVA, CPAMN; MARIANA APARECIDA CARVALHAES, CPAMN; PAULO SARMANHO DA COSTA LIMA, CPAMN.
dc.contributor.author.fl_str_mv SANTOS, M. F.
SILVA, K. J. D. e
CARVALHAES, M. A.
LIMA, P. S. da C.
dc.subject.por.fl_str_mv Diversidade genética
Manejo populacional
Coeficiente de similaridade
Genetic diversity
Palm tree
Population management
Similarity coefficients
Palmeira oleaginosa
Babaçu
topic Diversidade genética
Manejo populacional
Coeficiente de similaridade
Genetic diversity
Palm tree
Population management
Similarity coefficients
Palmeira oleaginosa
Babaçu
description The purpose of this study was to analyze the effects of management on the genetic structure of natural populations of Attalea speciosa in the State of Piauí, Brazil, using random-amplified polymorphic DNA (RAPD) markers. Three babassu populations under different management systems were selected. Polymerase chain reactions were performed for 20 RAPD primers. A total of 146 bands were generated, 141 of which were polymorphic (96.58%), with a variation of 4 and 12 loci and an average of 7 bands per primer. A dendrogram revealed a clear separation between the three populations (0.57). Data reliability and node consistency were verified by bootstrap values and the cophenetic correlation coefficient (88.15%). Coefficients of similarity between pairs of genotypes ranged from 0.26 to 0.86, with a mean of 0.57. Nei?s genetic diversity index (HE) value of the population sampled in Teresina was 0.212, of Esperantina it was 0.195, and of José de Freitas it was 0.207. After the HE was decomposed, the complete diversity was found to be 0.3213. Genetic differentiation between populations was0.362, and the estimation of gene flow between populations was low (0.879). Analysis of molecular variance revealed that 59.52% of the variation was contained within populations, and 40.48% was between populations. RAPD markers were effective for genetic diversity analysis within and between natural babassu populations, and exhibited a high level of polymorphism. Genetic diversity was the highest within populations; variability was lower in the managed populations than in the undisturbed populations.
publishDate 2015
dc.date.none.fl_str_mv 2015-06-15T11:11:11Z
2015-06-15T11:11:11Z
2015-06-15
2015
2015-06-15T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Genetics and Molecular Research, Ribeirão Preto, v. 14, n. 2, p. 6124-6135, June 2015.
1678-4685
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1017655
http://dx.doi.org/10.4238/2015.June.8.10
identifier_str_mv Genetics and Molecular Research, Ribeirão Preto, v. 14, n. 2, p. 6124-6135, June 2015.
1678-4685
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1017655
http://dx.doi.org/10.4238/2015.June.8.10
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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