With a little help from DNA barcoding: investigating the diversity of Gastropoda from the Portuguese coast

Detalhes bibliográficos
Autor(a) principal: Borges, L. M. S.
Data de Publicação: 2016
Outros Autores: Hollatz, C., Lobo, J., Cunha, Ana, Vilela, A. P., Calado, G., Coelho, R., Costa, A. C., Ferreira, M. G., Costa, M. H., Costa, Filipe O.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/50329
Resumo: The Gastropoda is one of the best studied classes of marine invertebrates. Yet, most species have been delimited based on morphology only. The application of DNA barcodes has shown to be greatly useful to help delimiting species. Therefore, sequences of the cytochrome c oxidase I gene from 108 specimens of 34 morpho-species were used to investigate the molecular diversity within the gastropods from the Portuguese coast. To the above dataset, we added available COI-5P sequences of taxonomically close species, in a total of 58 morpho-species examined. There was a good match between ours and sequences from independent studies, in public repositories. We found 32 concordant (91.4%) out of the 35 Barcode Index Numbers (BINs) generated from our sequences. The application of a ranking system to the barcodes yield over 70% with top taxonomic congruence, while 14.2% of the species barcodes had insufficient data. In the majority of the cases, there was a good concordance between morphological identification and DNA barcodes. Nonetheless, the discordance between morphological and molecular data is a reminder that even the comparatively well-known European marine gastropods can benefit from being probed using the DNA barcode approach. Discordant cases should be reviewed with more integrative studies.
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spelling With a little help from DNA barcoding: investigating the diversity of Gastropoda from the Portuguese coastCiências Naturais::Ciências BiológicasScience & TechnologyThe Gastropoda is one of the best studied classes of marine invertebrates. Yet, most species have been delimited based on morphology only. The application of DNA barcodes has shown to be greatly useful to help delimiting species. Therefore, sequences of the cytochrome c oxidase I gene from 108 specimens of 34 morpho-species were used to investigate the molecular diversity within the gastropods from the Portuguese coast. To the above dataset, we added available COI-5P sequences of taxonomically close species, in a total of 58 morpho-species examined. There was a good match between ours and sequences from independent studies, in public repositories. We found 32 concordant (91.4%) out of the 35 Barcode Index Numbers (BINs) generated from our sequences. The application of a ranking system to the barcodes yield over 70% with top taxonomic congruence, while 14.2% of the species barcodes had insufficient data. In the majority of the cases, there was a good concordance between morphological identification and DNA barcodes. Nonetheless, the discordance between morphological and molecular data is a reminder that even the comparatively well-known European marine gastropods can benefit from being probed using the DNA barcode approach. Discordant cases should be reviewed with more integrative studies.The present study was financed by FEDER through POFC-COMPETE, in the scope the project FCOMP-01-0124-FEDER-015429 funded by "Fundacao para a Ciencia e a Tecnologia" (FCT), Portugal. Work at CBMA was supported by FCT I.P. through the strategic funding UID/BIA/04050/2013. Sequencing at the Biodiversity Institute of Ontario was funded by the International Barcode of Life (iBOL), through the Canadian Centre for DNA Barcoding, from the Ontario Genomics Institute, Genome Canada, the Ontario Ministry of Research and Innovation, and the Natural Sciences and Engineering Research Council of Canada. Claudia Hollatz was supported by a CAPES Post-doctoral fellowship (Ministry of Education, Brazil), while Jorge Lobo was supported by a PhD fellowship (SFRH/BD/69750/2010) from FCT.info:eu-repo/semantics/publishedVersionNature Publishing GroupUniversidade do MinhoBorges, L. M. S.Hollatz, C.Lobo, J.Cunha, AnaVilela, A. P.Calado, G.Coelho, R.Costa, A. C.Ferreira, M. G.Costa, M. H.Costa, Filipe O.20162016-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/50329engBorges LMS, Hollatz C, Lobo J, Cunha AM, Vilela AP, Calado G, Coelho R, Costa AC, Ferreira MG, Costa MH, Costa FO (2016). With a little help from DNA barcoding: investigating the diversity of Gastropoda from the Portuguese coast. Scientific Reports 6, 20226; doi: 10.1038/srep20226.2045-232210.1038/srep2022626876495info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:17:22Zoai:repositorium.sdum.uminho.pt:1822/50329Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:09:59.533804Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv With a little help from DNA barcoding: investigating the diversity of Gastropoda from the Portuguese coast
title With a little help from DNA barcoding: investigating the diversity of Gastropoda from the Portuguese coast
spellingShingle With a little help from DNA barcoding: investigating the diversity of Gastropoda from the Portuguese coast
Borges, L. M. S.
Ciências Naturais::Ciências Biológicas
Science & Technology
title_short With a little help from DNA barcoding: investigating the diversity of Gastropoda from the Portuguese coast
title_full With a little help from DNA barcoding: investigating the diversity of Gastropoda from the Portuguese coast
title_fullStr With a little help from DNA barcoding: investigating the diversity of Gastropoda from the Portuguese coast
title_full_unstemmed With a little help from DNA barcoding: investigating the diversity of Gastropoda from the Portuguese coast
title_sort With a little help from DNA barcoding: investigating the diversity of Gastropoda from the Portuguese coast
author Borges, L. M. S.
author_facet Borges, L. M. S.
Hollatz, C.
Lobo, J.
Cunha, Ana
Vilela, A. P.
Calado, G.
Coelho, R.
Costa, A. C.
Ferreira, M. G.
Costa, M. H.
Costa, Filipe O.
author_role author
author2 Hollatz, C.
Lobo, J.
Cunha, Ana
Vilela, A. P.
Calado, G.
Coelho, R.
Costa, A. C.
Ferreira, M. G.
Costa, M. H.
Costa, Filipe O.
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Borges, L. M. S.
Hollatz, C.
Lobo, J.
Cunha, Ana
Vilela, A. P.
Calado, G.
Coelho, R.
Costa, A. C.
Ferreira, M. G.
Costa, M. H.
Costa, Filipe O.
dc.subject.por.fl_str_mv Ciências Naturais::Ciências Biológicas
Science & Technology
topic Ciências Naturais::Ciências Biológicas
Science & Technology
description The Gastropoda is one of the best studied classes of marine invertebrates. Yet, most species have been delimited based on morphology only. The application of DNA barcodes has shown to be greatly useful to help delimiting species. Therefore, sequences of the cytochrome c oxidase I gene from 108 specimens of 34 morpho-species were used to investigate the molecular diversity within the gastropods from the Portuguese coast. To the above dataset, we added available COI-5P sequences of taxonomically close species, in a total of 58 morpho-species examined. There was a good match between ours and sequences from independent studies, in public repositories. We found 32 concordant (91.4%) out of the 35 Barcode Index Numbers (BINs) generated from our sequences. The application of a ranking system to the barcodes yield over 70% with top taxonomic congruence, while 14.2% of the species barcodes had insufficient data. In the majority of the cases, there was a good concordance between morphological identification and DNA barcodes. Nonetheless, the discordance between morphological and molecular data is a reminder that even the comparatively well-known European marine gastropods can benefit from being probed using the DNA barcode approach. Discordant cases should be reviewed with more integrative studies.
publishDate 2016
dc.date.none.fl_str_mv 2016
2016-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/50329
url http://hdl.handle.net/1822/50329
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Borges LMS, Hollatz C, Lobo J, Cunha AM, Vilela AP, Calado G, Coelho R, Costa AC, Ferreira MG, Costa MH, Costa FO (2016). With a little help from DNA barcoding: investigating the diversity of Gastropoda from the Portuguese coast. Scientific Reports 6, 20226; doi: 10.1038/srep20226.
2045-2322
10.1038/srep20226
26876495
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Nature Publishing Group
publisher.none.fl_str_mv Nature Publishing Group
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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