Exploring the genetic architecture of feed efficiency traits in chickens

Detalhes bibliográficos
Autor(a) principal: Petroli Marchesi, Jorge Augusto [UNESP]
Data de Publicação: 2021
Outros Autores: Ono, Rafael Keith, Cantao, Mauricio Egidio, Guaratini Ibelli, Adriana Mercia, Peixoto, Jane de Oliveira, Monteiro Moreira, Gabriel Costa, Godoy, Thais Fernanda, Coutinho, Luiz Lehmann, Munari, Danisio Prado [UNESP], Ledur, Monica Correa
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1038/s41598-021-84125-9
http://hdl.handle.net/11449/210717
Resumo: Chicken feed efficiency (FE) traits are the most important economic traits in broiler production. Several studies evaluating genetic factors affecting food consumption in chickens are available. However, most of these studies identified genomic regions containing putative quantitative trait loci for each trait separately. It is still a challenge to find common gene networks related to these traits. Therefore, here, a genome-wide association study (GWAS) was conducted to explore candidate genomic regions responsible for Feed Intake (FI), Body Weight Gain (BWG) and Feed Conversion Ratio (FCR) traits and their gene networks. A total of 1430 broilers from an experimental population was genotyped with the high density Affymetrix 600K SNP array. A total of 119 associated SNPs located in 20 chromosomes were identified, where some of them were common in more than one FE trait. In addition, novel genomic regions were prospected considering the SNPs dominance effects and sex interaction, identifying putative candidate genes only when these effects were fit in the model. Relevant candidate genes such as ATRNL1, PIK3C2A, PTPRN2, SORCS3 and gga-mir-1759 were highlighted in this study helping to elucidate the genomic architecture of feed efficiency traits. These results provide new insights on the mechanisms underlying the consumption and utilization of food in chickens.
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spelling Exploring the genetic architecture of feed efficiency traits in chickensChicken feed efficiency (FE) traits are the most important economic traits in broiler production. Several studies evaluating genetic factors affecting food consumption in chickens are available. However, most of these studies identified genomic regions containing putative quantitative trait loci for each trait separately. It is still a challenge to find common gene networks related to these traits. Therefore, here, a genome-wide association study (GWAS) was conducted to explore candidate genomic regions responsible for Feed Intake (FI), Body Weight Gain (BWG) and Feed Conversion Ratio (FCR) traits and their gene networks. A total of 1430 broilers from an experimental population was genotyped with the high density Affymetrix 600K SNP array. A total of 119 associated SNPs located in 20 chromosomes were identified, where some of them were common in more than one FE trait. In addition, novel genomic regions were prospected considering the SNPs dominance effects and sex interaction, identifying putative candidate genes only when these effects were fit in the model. Relevant candidate genes such as ATRNL1, PIK3C2A, PTPRN2, SORCS3 and gga-mir-1759 were highlighted in this study helping to elucidate the genomic architecture of feed efficiency traits. These results provide new insights on the mechanisms underlying the consumption and utilization of food in chickens.Brazilian Agricultural Research Corporation-EmbrapaFundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Univ Estadual Paulista, Fac Ciencias Agr & Vet, BR-14884900 Jaboticabal, SP, BrazilEmbrapa Suinos & Aves, BR-89715899 Concordia, SC, BrazilUniv Sao Paulo, Dept Zootecnia, Escola Super Agr Luiz de Queiroz, Av Padua Dias 11, BR-13419900 Piracicaba, SP, BrazilUniv Sao Paulo, Dept Genet, BR-14049900 Ribeirao Preto, SP, BrazilPamplona Alimentos SA, BR-89164900 Rio Do Sul, SC, BrazilUniv Estadual Paulista, Fac Ciencias Agr & Vet, BR-14884900 Jaboticabal, SP, BrazilBrazilian Agricultural Research Corporation-Embrapa: 01.11.07.002.04.02FAPESP: 2014/08704-0CNPq: 481755/2007-1Nature ResearchUniversidade Estadual Paulista (Unesp)Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Universidade de São Paulo (USP)Pamplona Alimentos SAPetroli Marchesi, Jorge Augusto [UNESP]Ono, Rafael KeithCantao, Mauricio EgidioGuaratini Ibelli, Adriana MerciaPeixoto, Jane de OliveiraMonteiro Moreira, Gabriel CostaGodoy, Thais FernandaCoutinho, Luiz LehmannMunari, Danisio Prado [UNESP]Ledur, Monica Correa2021-06-26T03:35:36Z2021-06-26T03:35:36Z2021-02-25info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article12http://dx.doi.org/10.1038/s41598-021-84125-9Scientific Reports. Berlin: Nature Research, v. 11, n. 1, 12 p., 2021.2045-2322http://hdl.handle.net/11449/21071710.1038/s41598-021-84125-9WOS:000626620700063Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengScientific Reportsinfo:eu-repo/semantics/openAccess2021-10-23T22:13:54Zoai:repositorio.unesp.br:11449/210717Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T22:13:54Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Exploring the genetic architecture of feed efficiency traits in chickens
title Exploring the genetic architecture of feed efficiency traits in chickens
spellingShingle Exploring the genetic architecture of feed efficiency traits in chickens
Petroli Marchesi, Jorge Augusto [UNESP]
title_short Exploring the genetic architecture of feed efficiency traits in chickens
title_full Exploring the genetic architecture of feed efficiency traits in chickens
title_fullStr Exploring the genetic architecture of feed efficiency traits in chickens
title_full_unstemmed Exploring the genetic architecture of feed efficiency traits in chickens
title_sort Exploring the genetic architecture of feed efficiency traits in chickens
author Petroli Marchesi, Jorge Augusto [UNESP]
author_facet Petroli Marchesi, Jorge Augusto [UNESP]
Ono, Rafael Keith
Cantao, Mauricio Egidio
Guaratini Ibelli, Adriana Mercia
Peixoto, Jane de Oliveira
Monteiro Moreira, Gabriel Costa
Godoy, Thais Fernanda
Coutinho, Luiz Lehmann
Munari, Danisio Prado [UNESP]
Ledur, Monica Correa
author_role author
author2 Ono, Rafael Keith
Cantao, Mauricio Egidio
Guaratini Ibelli, Adriana Mercia
Peixoto, Jane de Oliveira
Monteiro Moreira, Gabriel Costa
Godoy, Thais Fernanda
Coutinho, Luiz Lehmann
Munari, Danisio Prado [UNESP]
Ledur, Monica Correa
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)
Universidade de São Paulo (USP)
Pamplona Alimentos SA
dc.contributor.author.fl_str_mv Petroli Marchesi, Jorge Augusto [UNESP]
Ono, Rafael Keith
Cantao, Mauricio Egidio
Guaratini Ibelli, Adriana Mercia
Peixoto, Jane de Oliveira
Monteiro Moreira, Gabriel Costa
Godoy, Thais Fernanda
Coutinho, Luiz Lehmann
Munari, Danisio Prado [UNESP]
Ledur, Monica Correa
description Chicken feed efficiency (FE) traits are the most important economic traits in broiler production. Several studies evaluating genetic factors affecting food consumption in chickens are available. However, most of these studies identified genomic regions containing putative quantitative trait loci for each trait separately. It is still a challenge to find common gene networks related to these traits. Therefore, here, a genome-wide association study (GWAS) was conducted to explore candidate genomic regions responsible for Feed Intake (FI), Body Weight Gain (BWG) and Feed Conversion Ratio (FCR) traits and their gene networks. A total of 1430 broilers from an experimental population was genotyped with the high density Affymetrix 600K SNP array. A total of 119 associated SNPs located in 20 chromosomes were identified, where some of them were common in more than one FE trait. In addition, novel genomic regions were prospected considering the SNPs dominance effects and sex interaction, identifying putative candidate genes only when these effects were fit in the model. Relevant candidate genes such as ATRNL1, PIK3C2A, PTPRN2, SORCS3 and gga-mir-1759 were highlighted in this study helping to elucidate the genomic architecture of feed efficiency traits. These results provide new insights on the mechanisms underlying the consumption and utilization of food in chickens.
publishDate 2021
dc.date.none.fl_str_mv 2021-06-26T03:35:36Z
2021-06-26T03:35:36Z
2021-02-25
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1038/s41598-021-84125-9
Scientific Reports. Berlin: Nature Research, v. 11, n. 1, 12 p., 2021.
2045-2322
http://hdl.handle.net/11449/210717
10.1038/s41598-021-84125-9
WOS:000626620700063
url http://dx.doi.org/10.1038/s41598-021-84125-9
http://hdl.handle.net/11449/210717
identifier_str_mv Scientific Reports. Berlin: Nature Research, v. 11, n. 1, 12 p., 2021.
2045-2322
10.1038/s41598-021-84125-9
WOS:000626620700063
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Scientific Reports
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 12
dc.publisher.none.fl_str_mv Nature Research
publisher.none.fl_str_mv Nature Research
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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