Avaliação da variabilidade fenotípica e genética em genótipos de cana-de-açuçar utilizando marcadores moleculares RAPD e SSR

Detalhes bibliográficos
Autor(a) principal: DUTRA FILHO, João de Andrade
Data de Publicação: 2010
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações da UFRPE
Texto Completo: http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6422
Resumo: The work had as aimed: (1) selecting progeny of sugarcane performancebased agronomic, index selection and genetic dissimilarity. (2) assess the genetic diversity in progenies of sugarcane by means of multivariate techniques based on eight characters agribusiness. (3) assess the genetic divergence in genotypes of sugarcane using molecular markers and microsatellites. The experiment was conducted in two stages. The first was held in the sugarcane zone of the North Coast of Pernambuco in the agricultural area of Usina Santa Teresa, Engenho Terra Rica, municipality of Goiana, with geographic coordinates (07º33’ S e 35º00’ W) and altitude of 13 m during the agricultural year 2006 to 2008 in red-yellow podzolic sandy texture. The experimental design was a randomized block design with five replications. Six progenies were evaluated, consisting of 200 individuals each, three standards considered, arising from clonal proliferation of commercial varieties RB943365, RB867515 and RB863129 and three of those self-pollinated varieties. For effective control of fertilization were used bells of TNT, measuring 0.50 cm in radius and 1.20 m long sealed. Each plot consisted of 5 rows of 8 m, spaced 1.20 m with 8 seedlings per line with 1 m between plants, thus totaling 40 seedlings per plot. The variables analyzed were: pol tons per hectare (PTH), sugarcane tons per hectere (STH), fiber (FB), correted pol% (CPP), purity (PTY), brix (BX),reducing sugar (RS), total retrievable sugar (TRS). Carried out the analysis of variance and estimation of genetic parameters, the standard Euclidean distance and the distance of Rogers were used as measures of dissimilarity matrices which were correlated by the Mantel test. The Mahalanobis distance was used to quantify the genetic divergence. Were used the method of hierarchical links averages (UPGMA) method and the optimization procedure. The second stage was performed at the Laboratory of Molecular Genetics, Department of Biology, Federal University of Lavras (UFLA) in Minas Gerais. For molecular analysis were selected 23 genotypes of the families surveyed in the first stage of the experiment. And three commercial varieties RB943365, RB867515 and RB863129 and 20 randomly selected families originating from selfing of commercial varieties(stratified mass selection in families). The genetic divergence was estimated based on the polymorphism generated by RAPD (Random Amplified Polymorphic DNA) and SSR (Simple Sequence Repeats). The arithmetic complement of the Simple Matching coefficient and Jaccard coefficient were used as measures of dissimilarity whose headquarters were correlated by the Mantel test. We applied the optimization method of Tocher and the hierarchical method of links averages (UPGMA). The methodology allowed the identification of progeny of higher genetic diversity in plant breeding by providing a safer choice of crosses to be made.
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spelling BASTOS, Gerson QuirinoResende, Luciane VilelaAnunciação Filho, Clodoaldo José daCarvalho, Reginaldo deTabosa, José NildoDUTRA FILHO, João de Andrade2017-02-17T13:09:47Z2010-02-23DUTRA FILHO, João de Andrade. Avaliação da variabilidade fenotípica e genética em genótipos de cana-de-açúcar utilizando marcadores moleculares RAPD e SSR. 2010. 154 f. Dissertação (Programa de Pós-Graduação em Melhoramento Genético de Plantas) - Universidade Federal Rural de Pernambuco, Recife.http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6422The work had as aimed: (1) selecting progeny of sugarcane performancebased agronomic, index selection and genetic dissimilarity. (2) assess the genetic diversity in progenies of sugarcane by means of multivariate techniques based on eight characters agribusiness. (3) assess the genetic divergence in genotypes of sugarcane using molecular markers and microsatellites. The experiment was conducted in two stages. The first was held in the sugarcane zone of the North Coast of Pernambuco in the agricultural area of Usina Santa Teresa, Engenho Terra Rica, municipality of Goiana, with geographic coordinates (07º33’ S e 35º00’ W) and altitude of 13 m during the agricultural year 2006 to 2008 in red-yellow podzolic sandy texture. The experimental design was a randomized block design with five replications. Six progenies were evaluated, consisting of 200 individuals each, three standards considered, arising from clonal proliferation of commercial varieties RB943365, RB867515 and RB863129 and three of those self-pollinated varieties. For effective control of fertilization were used bells of TNT, measuring 0.50 cm in radius and 1.20 m long sealed. Each plot consisted of 5 rows of 8 m, spaced 1.20 m with 8 seedlings per line with 1 m between plants, thus totaling 40 seedlings per plot. The variables analyzed were: pol tons per hectare (PTH), sugarcane tons per hectere (STH), fiber (FB), correted pol% (CPP), purity (PTY), brix (BX),reducing sugar (RS), total retrievable sugar (TRS). Carried out the analysis of variance and estimation of genetic parameters, the standard Euclidean distance and the distance of Rogers were used as measures of dissimilarity matrices which were correlated by the Mantel test. The Mahalanobis distance was used to quantify the genetic divergence. Were used the method of hierarchical links averages (UPGMA) method and the optimization procedure. The second stage was performed at the Laboratory of Molecular Genetics, Department of Biology, Federal University of Lavras (UFLA) in Minas Gerais. For molecular analysis were selected 23 genotypes of the families surveyed in the first stage of the experiment. And three commercial varieties RB943365, RB867515 and RB863129 and 20 randomly selected families originating from selfing of commercial varieties(stratified mass selection in families). The genetic divergence was estimated based on the polymorphism generated by RAPD (Random Amplified Polymorphic DNA) and SSR (Simple Sequence Repeats). The arithmetic complement of the Simple Matching coefficient and Jaccard coefficient were used as measures of dissimilarity whose headquarters were correlated by the Mantel test. We applied the optimization method of Tocher and the hierarchical method of links averages (UPGMA). The methodology allowed the identification of progeny of higher genetic diversity in plant breeding by providing a safer choice of crosses to be made.Objetivou-se com este trabalho: (1) selecionar progênies de cana-de-açúcar com base no desempenho agroindustrial, índices de seleção e dissimilaridade genética. (2) avaliar a divergência genética em progênies de cana-de-açúcar, através de técnicas multivariadas, com base em oito caracteres agroindustriais. (3) avaliar a divergência genética em genótipos de cana-de-açúcar utilizando marcadores moleculares RAPD e Microssatélites. O experimento foi conduzido em duas etapas. A primeira foi realizada na zona canavieira do Litoral Norte de Pernambuco na área agrícola da Usina Santa Tereza, Engenho Terra Rica, município de Goiana, com coordenadas geográficas (07º33’ S e 35º00’ W) e altitude de 13 m, durante o ano agrícola 2006 a 2008 em argissolo vermelho-amarelo de textura arenosa. O delineamento experimental utilizado foi o de blocos ao acaso com cinco repetições. Foram avaliadas seis progênies, constituídas de 200 indivíduos cada, sendo três consideradas padrões, oriundas de multiplicação clonal das variedades comerciais RB943365, RB867515 e RB863129 e três de autofecundação dessas mesmas variedades. Para o controle efetivo da autofecundação utilizaram-se campânulas de TNT, medindo 0,50 cm de raio e 1,20 m de comprimento totalmente fechadas. Cada parcela experimental foi constituída por 5 linhas de 8 m, espaçadas de 1,20 m com 8 seedlings por linha com 1 m entre plantas, totalizando assim 40 seedlings por parcela. As variáveis analisadas foram: Toneladas de pol por hectare (TPH), toneladas de cana por hectare (TCH), fibra (FIB), pol corrigida (PCC), pureza (PZA), teor de sólidos solúveis (BRIX), açúcares redutores (AR), açúcares totais recuperáveis (ATR). Realizou-se a análise de variância e estimativa de parâmetros genéticos, a distância euclidiana média padronizada e a distância de Rogers serviram para estimar a dissimilaridade entre progênies cujas matrizes foram correlacionadas pelo teste de Mantel. A distância generalizada de Mahalanobis foi utilizada para quantificar a divergência genética.Foram utilizados o método hierárquico de ligações médias (UPGMA) e o método de otimização de Tocher. A segunda etapa foi realizada no Laboratório de Genética Molecular do Departamento de Biologia da Universidade Federal de Lavras (UFLA) em Minas Gerais. Para a análise molecular foram selecionados 23 genótipos das famílias avaliadas na primeira etapa do experimento, sendo três variedades comerciais RB943365, RB867515 e RB863129 e 20 selecionados ao acaso das famílias oriundas da autofecundação dessas variedades comerciais (seleção massal estratificada em famílias). A divergência genética foi estimada com base no polimorfismo gerado por meio de marcadores RAPD (Random Amplified Polymorphic DNA) e SSR (Simple Sequence Repeats). O complemento aritmético do Coeficiente de Coincidência Simples e do Coeficiente de Jaccard foram utilizados como medidas de dissimilaridade, cujas matrizes foram correlacionadas pelo teste de Mantel. Foram aplicados o método de otimização de Tocher e o método hierárquico das ligações médias (UPGMA). A metodologia aplicada permitiu a identificação de progênies de maior divergência genética proporcionando aos fitomelhoristas maior segurança na escolha dos cruzamentos a serem realizados.Submitted by (ana.araujo@ufrpe.br) on 2017-02-17T13:09:47Z No. of bitstreams: 1 Joao de Andrade Dutra Filho.pdf: 921509 bytes, checksum: f7aac66eb6fa6e2fbd3d500ad245707f (MD5)Made available in DSpace on 2017-02-17T13:09:47Z (GMT). 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dc.title.por.fl_str_mv Avaliação da variabilidade fenotípica e genética em genótipos de cana-de-açuçar utilizando marcadores moleculares RAPD e SSR
title Avaliação da variabilidade fenotípica e genética em genótipos de cana-de-açuçar utilizando marcadores moleculares RAPD e SSR
spellingShingle Avaliação da variabilidade fenotípica e genética em genótipos de cana-de-açuçar utilizando marcadores moleculares RAPD e SSR
DUTRA FILHO, João de Andrade
Saccharum spp.
Cana-de-açúcar
Seleção
Polimorfismo genético
Autofecundação
Selection
Genetic polymorphism
Self-pollination
FITOTECNIA::MELHORAMENTO VEGETAL
title_short Avaliação da variabilidade fenotípica e genética em genótipos de cana-de-açuçar utilizando marcadores moleculares RAPD e SSR
title_full Avaliação da variabilidade fenotípica e genética em genótipos de cana-de-açuçar utilizando marcadores moleculares RAPD e SSR
title_fullStr Avaliação da variabilidade fenotípica e genética em genótipos de cana-de-açuçar utilizando marcadores moleculares RAPD e SSR
title_full_unstemmed Avaliação da variabilidade fenotípica e genética em genótipos de cana-de-açuçar utilizando marcadores moleculares RAPD e SSR
title_sort Avaliação da variabilidade fenotípica e genética em genótipos de cana-de-açuçar utilizando marcadores moleculares RAPD e SSR
author DUTRA FILHO, João de Andrade
author_facet DUTRA FILHO, João de Andrade
author_role author
dc.contributor.advisor1.fl_str_mv BASTOS, Gerson Quirino
dc.contributor.advisor-co1.fl_str_mv Resende, Luciane Vilela
dc.contributor.referee1.fl_str_mv Anunciação Filho, Clodoaldo José da
dc.contributor.referee2.fl_str_mv Carvalho, Reginaldo de
dc.contributor.referee3.fl_str_mv Tabosa, José Nildo
dc.contributor.author.fl_str_mv DUTRA FILHO, João de Andrade
contributor_str_mv BASTOS, Gerson Quirino
Resende, Luciane Vilela
Anunciação Filho, Clodoaldo José da
Carvalho, Reginaldo de
Tabosa, José Nildo
dc.subject.por.fl_str_mv Saccharum spp.
Cana-de-açúcar
Seleção
Polimorfismo genético
Autofecundação
topic Saccharum spp.
Cana-de-açúcar
Seleção
Polimorfismo genético
Autofecundação
Selection
Genetic polymorphism
Self-pollination
FITOTECNIA::MELHORAMENTO VEGETAL
dc.subject.eng.fl_str_mv Selection
Genetic polymorphism
Self-pollination
dc.subject.cnpq.fl_str_mv FITOTECNIA::MELHORAMENTO VEGETAL
description The work had as aimed: (1) selecting progeny of sugarcane performancebased agronomic, index selection and genetic dissimilarity. (2) assess the genetic diversity in progenies of sugarcane by means of multivariate techniques based on eight characters agribusiness. (3) assess the genetic divergence in genotypes of sugarcane using molecular markers and microsatellites. The experiment was conducted in two stages. The first was held in the sugarcane zone of the North Coast of Pernambuco in the agricultural area of Usina Santa Teresa, Engenho Terra Rica, municipality of Goiana, with geographic coordinates (07º33’ S e 35º00’ W) and altitude of 13 m during the agricultural year 2006 to 2008 in red-yellow podzolic sandy texture. The experimental design was a randomized block design with five replications. Six progenies were evaluated, consisting of 200 individuals each, three standards considered, arising from clonal proliferation of commercial varieties RB943365, RB867515 and RB863129 and three of those self-pollinated varieties. For effective control of fertilization were used bells of TNT, measuring 0.50 cm in radius and 1.20 m long sealed. Each plot consisted of 5 rows of 8 m, spaced 1.20 m with 8 seedlings per line with 1 m between plants, thus totaling 40 seedlings per plot. The variables analyzed were: pol tons per hectare (PTH), sugarcane tons per hectere (STH), fiber (FB), correted pol% (CPP), purity (PTY), brix (BX),reducing sugar (RS), total retrievable sugar (TRS). Carried out the analysis of variance and estimation of genetic parameters, the standard Euclidean distance and the distance of Rogers were used as measures of dissimilarity matrices which were correlated by the Mantel test. The Mahalanobis distance was used to quantify the genetic divergence. Were used the method of hierarchical links averages (UPGMA) method and the optimization procedure. The second stage was performed at the Laboratory of Molecular Genetics, Department of Biology, Federal University of Lavras (UFLA) in Minas Gerais. For molecular analysis were selected 23 genotypes of the families surveyed in the first stage of the experiment. And three commercial varieties RB943365, RB867515 and RB863129 and 20 randomly selected families originating from selfing of commercial varieties(stratified mass selection in families). The genetic divergence was estimated based on the polymorphism generated by RAPD (Random Amplified Polymorphic DNA) and SSR (Simple Sequence Repeats). The arithmetic complement of the Simple Matching coefficient and Jaccard coefficient were used as measures of dissimilarity whose headquarters were correlated by the Mantel test. We applied the optimization method of Tocher and the hierarchical method of links averages (UPGMA). The methodology allowed the identification of progeny of higher genetic diversity in plant breeding by providing a safer choice of crosses to be made.
publishDate 2010
dc.date.issued.fl_str_mv 2010-02-23
dc.date.accessioned.fl_str_mv 2017-02-17T13:09:47Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
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dc.identifier.citation.fl_str_mv DUTRA FILHO, João de Andrade. Avaliação da variabilidade fenotípica e genética em genótipos de cana-de-açúcar utilizando marcadores moleculares RAPD e SSR. 2010. 154 f. Dissertação (Programa de Pós-Graduação em Melhoramento Genético de Plantas) - Universidade Federal Rural de Pernambuco, Recife.
dc.identifier.uri.fl_str_mv http://www.tede2.ufrpe.br:8080/tede2/handle/tede2/6422
identifier_str_mv DUTRA FILHO, João de Andrade. Avaliação da variabilidade fenotípica e genética em genótipos de cana-de-açúcar utilizando marcadores moleculares RAPD e SSR. 2010. 154 f. Dissertação (Programa de Pós-Graduação em Melhoramento Genético de Plantas) - Universidade Federal Rural de Pernambuco, Recife.
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dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Federal Rural de Pernambuco
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Melhoramento Genético de Plantas
dc.publisher.initials.fl_str_mv UFRPE
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Departamento de Agronomia
publisher.none.fl_str_mv Universidade Federal Rural de Pernambuco
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bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações da UFRPE - Universidade Federal Rural de Pernambuco (UFRPE)
repository.mail.fl_str_mv bdtd@ufrpe.br ||bdtd@ufrpe.br
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