ProtozoaDB: dynamic visualization and exploration of protozoan genomes
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2008 |
| Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Repositório Institucional da FIOCRUZ (ARCA) |
| Texto Completo: | https://www.arca.fiocruz.br/handle/icict/32381 |
Resumo: | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil. |
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Dávila, Alberto M. R.Mendes, Pablo N.Wagner, GlauberTschoeke, Diogo A.Cuadrat, Rafael R. C.Liberman, FelipeMatos, LucianaSatake, ThiagoOcaña, Kary A. C. S.Triana, OmarCruz, Sérgio M. S.Jucá, Henrique C. L.Cury, Juliano C.Silva, Fabricio N.Geronimo, Guilherme A.Ruiz, MargaritaRuback, EduardoSilva, Floriano P.Probst, Christian M.Grisard, Edmundo C.Krieger, Marco A.Goldenberg, SamuelCavalcanti, Maria C. R.Moraes, Milton O.Campos, Maria L. M.Mattoso, Marta2019-04-04T17:31:06Z2019-04-04T17:31:06Z2008DÁVILA, Alberto M. R. et al. ProtozoaDB: dynamic visualization and exploration of protozoan genomes. Nucleic Acids Research, v. 36, p. D547–D552, 2008.0305-1048https://www.arca.fiocruz.br/handle/icict/3238110.1093/nar/gkm8201362-4962engOxford University PressProtozoaDBCapacidades de bioinformáticaDesenvolvimento de sistemas locais e regionaisBase de dadosGenômica dos protozoáriosPesquisasAvanço científicoProtozoaDBProtozoan genomesScientific advancementDatabaseResearchDevelopment of local and regional bioinformatics capabilitiesProtozoaDB: dynamic visualization and exploration of protozoan genomesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleFundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil.Wright State University. Knoesis Center. USA.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil / Universidade Federal de Santa Catarina. Centro Biomédico. SC, Brasil / Universidade do Oeste de Santa Catarina. SC, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil.Universidade Federal do Rio de Janeiro. COPPE. Rio de Janeiro, RJ, Brasil.Universidade Federal do Paraná. PR, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil / Antioquia University. Colombia.Universidade Federal do Rio de Janeiro. COPPE. Rio de Janeiro, RJ, Brasil / Universidade Federal do Rio de Janeiro. NCE. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil.Universidade Federal do Rio de Janeiro. COPPE. Rio de Janeiro, RJ, Brasil.Universidade Federal de Santa Catarina. Centro Biomédico. SC, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil.Fundação Oswaldo Cruz. Instituto de Biologia Molecular do Paraná. PR, Brasil.Universidade Federal de Santa Catarina. Centro Biomédico. SC, Brasil.Fundação Oswaldo Cruz. Instituto de Biologia Molecular do Paraná. PR, Brasil.Fundação Oswaldo Cruz. Instituto de Biologia Molecular do Paraná. PR, Brasil.Instituto Militar de Engenharia. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil.Universidade Federal do Rio de Janeiro. DCC. Rio de Janeiro, RJ, Brasil.Universidade Federal do Rio de Janeiro. COPPE. Rio de Janeiro, RJ, Brasil.ProtozoaDB (http://www.biowebdb.org/protozoadb) is being developed to initially host both genomics and post-genomics data from Plasmodium falciparum, Entamoeba histolytica, Trypanosoma brucei, T. cruzi and Leishmania major, but will hopefully host other protozoan species as more genomes are sequenced. It is based on the Genomics Unified Schema and offers a modern Web-based interface for user-friendly data visualization and exploration. This database is not intended to duplicate other similar efforts such as GeneDB, PlasmoDB, TcruziDB or even TDRtargets, but to be complementary by providing further analyses with emphasis on distant similarities (HMM-based) and phylogeny-based annotations including orthology analysis. ProtozoaDB will be progressively linked to the above-mentioned databases, focusing in performing a multi-source dynamic combination of information through advanced interoperable Web tools such as Web services. Also, to provide Web services will allow third-party software to retrieve and use data from ProtozoaDB in automated pipelines (workflows) or other interoperable Web technologies, promoting better information reuse and integration. We also expect ProtozoaDB to catalyze the development of local and regional bioinformatics capabilities (research and training), and therefore promote/enhance scientific advancement in developing countries.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/32381/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALAlbertoDR_Davila_etal_IOC_2008.pdfAlbertoDR_Davila_etal_IOC_2008.pdfapplication/pdf530844https://www.arca.fiocruz.br/bitstream/icict/32381/2/AlbertoDR_Davila_etal_IOC_2008.pdfccf16cc96c2504d4c9f1bb47497241ebMD52TEXTAlbertoDR_Davila_etal_IOC_2008.pdf.txtAlbertoDR_Davila_etal_IOC_2008.pdf.txtExtracted texttext/plain20941https://www.arca.fiocruz.br/bitstream/icict/32381/3/AlbertoDR_Davila_etal_IOC_2008.pdf.txt1df7cc0dd6b1dc328db7f134006825b4MD53icict/323812022-06-24 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| dc.title.pt_BR.fl_str_mv |
ProtozoaDB: dynamic visualization and exploration of protozoan genomes |
| title |
ProtozoaDB: dynamic visualization and exploration of protozoan genomes |
| spellingShingle |
ProtozoaDB: dynamic visualization and exploration of protozoan genomes Dávila, Alberto M. R. ProtozoaDB Capacidades de bioinformática Desenvolvimento de sistemas locais e regionais Base de dados Genômica dos protozoários Pesquisas Avanço científico ProtozoaDB Protozoan genomes Scientific advancement Database Research Development of local and regional bioinformatics capabilities |
| title_short |
ProtozoaDB: dynamic visualization and exploration of protozoan genomes |
| title_full |
ProtozoaDB: dynamic visualization and exploration of protozoan genomes |
| title_fullStr |
ProtozoaDB: dynamic visualization and exploration of protozoan genomes |
| title_full_unstemmed |
ProtozoaDB: dynamic visualization and exploration of protozoan genomes |
| title_sort |
ProtozoaDB: dynamic visualization and exploration of protozoan genomes |
| author |
Dávila, Alberto M. R. |
| author_facet |
Dávila, Alberto M. R. Mendes, Pablo N. Wagner, Glauber Tschoeke, Diogo A. Cuadrat, Rafael R. C. Liberman, Felipe Matos, Luciana Satake, Thiago Ocaña, Kary A. C. S. Triana, Omar Cruz, Sérgio M. S. Jucá, Henrique C. L. Cury, Juliano C. Silva, Fabricio N. Geronimo, Guilherme A. Ruiz, Margarita Ruback, Eduardo Silva, Floriano P. Probst, Christian M. Grisard, Edmundo C. Krieger, Marco A. Goldenberg, Samuel Cavalcanti, Maria C. R. Moraes, Milton O. Campos, Maria L. M. Mattoso, Marta |
| author_role |
author |
| author2 |
Mendes, Pablo N. Wagner, Glauber Tschoeke, Diogo A. Cuadrat, Rafael R. C. Liberman, Felipe Matos, Luciana Satake, Thiago Ocaña, Kary A. C. S. Triana, Omar Cruz, Sérgio M. S. Jucá, Henrique C. L. Cury, Juliano C. Silva, Fabricio N. Geronimo, Guilherme A. Ruiz, Margarita Ruback, Eduardo Silva, Floriano P. Probst, Christian M. Grisard, Edmundo C. Krieger, Marco A. Goldenberg, Samuel Cavalcanti, Maria C. R. Moraes, Milton O. Campos, Maria L. M. Mattoso, Marta |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.contributor.author.fl_str_mv |
Dávila, Alberto M. R. Mendes, Pablo N. Wagner, Glauber Tschoeke, Diogo A. Cuadrat, Rafael R. C. Liberman, Felipe Matos, Luciana Satake, Thiago Ocaña, Kary A. C. S. Triana, Omar Cruz, Sérgio M. S. Jucá, Henrique C. L. Cury, Juliano C. Silva, Fabricio N. Geronimo, Guilherme A. Ruiz, Margarita Ruback, Eduardo Silva, Floriano P. Probst, Christian M. Grisard, Edmundo C. Krieger, Marco A. Goldenberg, Samuel Cavalcanti, Maria C. R. Moraes, Milton O. Campos, Maria L. M. Mattoso, Marta |
| dc.subject.other.pt_BR.fl_str_mv |
ProtozoaDB Capacidades de bioinformática Desenvolvimento de sistemas locais e regionais Base de dados Genômica dos protozoários Pesquisas Avanço científico |
| topic |
ProtozoaDB Capacidades de bioinformática Desenvolvimento de sistemas locais e regionais Base de dados Genômica dos protozoários Pesquisas Avanço científico ProtozoaDB Protozoan genomes Scientific advancement Database Research Development of local and regional bioinformatics capabilities |
| dc.subject.en.pt_BR.fl_str_mv |
ProtozoaDB Protozoan genomes Scientific advancement Database Research Development of local and regional bioinformatics capabilities |
| description |
Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Rio de Janeiro, RJ. Brasil. |
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2008 |
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2008 |
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2019-04-04T17:31:06Z |
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2019-04-04T17:31:06Z |
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info:eu-repo/semantics/article |
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DÁVILA, Alberto M. R. et al. ProtozoaDB: dynamic visualization and exploration of protozoan genomes. Nucleic Acids Research, v. 36, p. D547–D552, 2008. |
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https://www.arca.fiocruz.br/handle/icict/32381 |
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0305-1048 |
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10.1093/nar/gkm820 |
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1362-4962 |
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DÁVILA, Alberto M. R. et al. ProtozoaDB: dynamic visualization and exploration of protozoan genomes. Nucleic Acids Research, v. 36, p. D547–D552, 2008. 0305-1048 10.1093/nar/gkm820 1362-4962 |
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Oxford University Press |
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Oxford University Press |
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