RegaDB: community-driven data management and analysis for infectious diseases.
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2013 |
| Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Repositório Institucional da FIOCRUZ (ARCA) |
| Texto Completo: | https://www.arca.fiocruz.br/handle/icict/8827 |
Resumo: | Institute for Medical Research, KU Leuven. Department of Microbiology and Immunology. Leuven, Belgium / Mybiodata, Biomedical IT solutions. Rotselaar, Belgium |
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Libin, PieterBeheydt, GertjanDeforche, KoenImbrechts, StijnFerreira, FossieVan Laethem, KristelTheys, KristofCarvalho, Ana PatriciaCavaco-Silva, JoanaLapadula, GiuseppeTorti, CarloAssel, MatthiasWesner, StefanSnoeck, JokeRuelle, JeanDe Bel, AnneliesLacor, PatrickDe Munter, PaulVan Wijngaerden, EricZazzi, MaurizioKaiser, RolfAyouba, AhidjoPeeters, MartineOliveira, Tulio deAlcantara, Luiz Carlos JúniorGrossman, ZehavaSloot, PeterOtelea, DanParaschiv, SimonaBoucher, CharlesCamacho, Ricardo JVandamme, Anne-Mieke2014-11-13T14:27:00Z2014-11-13T14:27:00Z2013LIBIN, P. et al. RegaDB: community-driven data management and analysis for infectious diseases. Bioinformatics, v. 29, n. 11, p. 1477-1480, 2013.1367-4811https://www.arca.fiocruz.br/handle/icict/882710.1093/bioinformatics/btt162engOxford University PressRegaDB: community-driven data management and analysis for infectious diseases.info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleInstitute for Medical Research, KU Leuven. Department of Microbiology and Immunology. Leuven, Belgium / Mybiodata, Biomedical IT solutions. Rotselaar, BelgiumInstitute for Medical Research, KU Leuven. Department of Microbiology and Immunology. Leuven, BelgiumMybiodata, Biomedical IT solutions. Rotselaar, BelgiumInstitute for Medical Research, KU Leuven. Department of Microbiology and Immunology. Leuven, BelgiumInstitute for Medical Research, KU Leuven. Department of Microbiology and Immunology. Leuven, Belgium / University Hospitals Leuven. Internal Medicine. Leuven, BelgiumInstitute for Medical Research, KU Leuven. Department of Microbiology and Immunology. Leuven, Belgium / University Hospitals Leuven. Internal Medicine. Leuven, BelgiumInstitute for Medical Research, KU Leuven. Department of Microbiology and Immunology. Leuven, BelgiumCentro Hospitalar de Lisboa Ocidental. Lisbon, PortugalUniversidade Nova de Lisboa. Instituto de Higiene e Medicina Tropical. Centro de Malária e Outras Doenças Tropicais. Lisbon, PortugalUniversity of Brescia Department of Clinical and Experimental Sciences. Brescia, ItalyUniversity of Brescia Department of Clinical and Experimental Sciences. Brescia, ItalyUniversity Stuttgart. High Performance Computing Center. Stuttgart, GermanyUniversity Stuttgart. High Performance Computing Center. Stuttgart, GermanyInstitute for Medical Research, KU Leuven. Department of Microbiology and Immunology. Leuven, BelgiumUniversité Catholique de Louvain. Louvain-la-Neuve, BelgiumUniversitair Ziekenhuis Brussel. Clinical Biology. Brussels, BelgiumUniversitair Ziekenhuis Brussel. Internal Medicine. Brussels, BelgiumUniversity Hospitals Leuven. Internal Medicine. Leuven, BelgiumInstitute for Medical Research, KU Leuven. Department of Microbiology and Immunology. Leuven, Belgium / University Hospitals Leuven. Internal Medicine. Leuven, BelgiumUniversity of Siena. Department of Biotechnology. Siena, ItalyUniversity of Cologne. Institute of Virology. Cologne, GermanyInstitut de recherche pour ledé veloppement. Montpellier, FranceInstitut de recherche pour ledé veloppement. Montpellier, FranceUniversity of KwaZulu-Natal. Africa Centre for Health and Population Studies. Nelson R Mandela School of Medicine. Durban, South AfricaFundação Oswaldo Cruz. Centro de Pesquisas Gonçalo Moniz. Salvador, BA, BrasilTel-Aviv University. Sackler School of Medicine. Tel-Aviv, IsraelUniversity of Amsterdam. Department of Computational Science. Amsterdam, the NetherlandsInstitutul National de Boli Infectioase ‘Prof. Dr. Matei Bals’. Department of Molecular Diagnostics. Bucharest, RomaniaInstitutul National de Boli Infectioase ‘Prof. Dr. Matei Bals’. Department of Molecular Diagnostics. Bucharest, RomaniaErasmus University. Erasmus Medical Center. Department of Virology. Rotterdam, the NetherlandsCentro Hospitalar de Lisboa Ocidental, Lisbon, Portugal / Universidade Nova de Lisboa. Instituto de Higiene e Medicina Tropical. Centro de Malária e Outras Doenças Tropicais. Lisbon, PortugalInstitute for Medical Research, KU Leuven. Department of Microbiology and Immunology. Leuven, Belgium / Universidade Nova de Lisboa. Instituto de Higiene e Medicina Tropical. Centro de Malária e Outras Doenças Tropicais. Lisbon, PortugalSUMMARY: RegaDB is a free and open source data management and analysis environment for infectious diseases. RegaDB allows clinicians to store, manage and analyse patient data, including viral genetic sequences. Moreover, RegaDB provides researchers with a mechanism to collect data in a uniform format and offers them a canvas to make newly developed bioinformatics tools available to clinicians and virologists through a user friendly interface. Availability and implementation: Source code, binaries and documentation are available on http://rega.kuleuven.be/cev/regadb. RegaDB is written in the Java programming language, using a web-service-oriented architecture.Bases de Dados FactuaisSoftwareVirosesSistemas de Gerenciamento de Base de DadosHumanosViroses/diagnósticoViroses/terapiaViroses/alergiainfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-81914https://www.arca.fiocruz.br/bitstream/icict/8827/1/license.txt7d48279ffeed55da8dfe2f8e81f3b81fMD51ORIGINALLibin P RegaDB....pdfLibin P RegaDB....pdfapplication/pdf136486https://www.arca.fiocruz.br/bitstream/icict/8827/2/Libin%20P%20RegaDB....pdf60625cc770eb600ef2df84759b0cede9MD52TEXTLibin P RegaDB....pdf.txtLibin P RegaDB....pdf.txtExtracted texttext/plain19628https://www.arca.fiocruz.br/bitstream/icict/8827/3/Libin%20P%20RegaDB....pdf.txtbea8310b07bf1e23920cc1babfbf08a6MD53icict/88272023-03-15 14:32:59.006oai:www.arca.fiocruz.br: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ório InstitucionalPUBhttps://www.arca.fiocruz.br/oai/requestrepositorio.arca@fiocruz.bropendoar:21352023-03-15T17:32:59Repositório Institucional da FIOCRUZ (ARCA) - Fundação Oswaldo Cruz (FIOCRUZ)false |
| dc.title.pt_BR.fl_str_mv |
RegaDB: community-driven data management and analysis for infectious diseases. |
| title |
RegaDB: community-driven data management and analysis for infectious diseases. |
| spellingShingle |
RegaDB: community-driven data management and analysis for infectious diseases. Libin, Pieter Bases de Dados Factuais Software Viroses Sistemas de Gerenciamento de Base de Dados Humanos Viroses/diagnóstico Viroses/terapia Viroses/alergia |
| title_short |
RegaDB: community-driven data management and analysis for infectious diseases. |
| title_full |
RegaDB: community-driven data management and analysis for infectious diseases. |
| title_fullStr |
RegaDB: community-driven data management and analysis for infectious diseases. |
| title_full_unstemmed |
RegaDB: community-driven data management and analysis for infectious diseases. |
| title_sort |
RegaDB: community-driven data management and analysis for infectious diseases. |
| author |
Libin, Pieter |
| author_facet |
Libin, Pieter Beheydt, Gertjan Deforche, Koen Imbrechts, Stijn Ferreira, Fossie Van Laethem, Kristel Theys, Kristof Carvalho, Ana Patricia Cavaco-Silva, Joana Lapadula, Giuseppe Torti, Carlo Assel, Matthias Wesner, Stefan Snoeck, Joke Ruelle, Jean De Bel, Annelies Lacor, Patrick De Munter, Paul Van Wijngaerden, Eric Zazzi, Maurizio Kaiser, Rolf Ayouba, Ahidjo Peeters, Martine Oliveira, Tulio de Alcantara, Luiz Carlos Júnior Grossman, Zehava Sloot, Peter Otelea, Dan Paraschiv, Simona Boucher, Charles Camacho, Ricardo J Vandamme, Anne-Mieke |
| author_role |
author |
| author2 |
Beheydt, Gertjan Deforche, Koen Imbrechts, Stijn Ferreira, Fossie Van Laethem, Kristel Theys, Kristof Carvalho, Ana Patricia Cavaco-Silva, Joana Lapadula, Giuseppe Torti, Carlo Assel, Matthias Wesner, Stefan Snoeck, Joke Ruelle, Jean De Bel, Annelies Lacor, Patrick De Munter, Paul Van Wijngaerden, Eric Zazzi, Maurizio Kaiser, Rolf Ayouba, Ahidjo Peeters, Martine Oliveira, Tulio de Alcantara, Luiz Carlos Júnior Grossman, Zehava Sloot, Peter Otelea, Dan Paraschiv, Simona Boucher, Charles Camacho, Ricardo J Vandamme, Anne-Mieke |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.contributor.author.fl_str_mv |
Libin, Pieter Beheydt, Gertjan Deforche, Koen Imbrechts, Stijn Ferreira, Fossie Van Laethem, Kristel Theys, Kristof Carvalho, Ana Patricia Cavaco-Silva, Joana Lapadula, Giuseppe Torti, Carlo Assel, Matthias Wesner, Stefan Snoeck, Joke Ruelle, Jean De Bel, Annelies Lacor, Patrick De Munter, Paul Van Wijngaerden, Eric Zazzi, Maurizio Kaiser, Rolf Ayouba, Ahidjo Peeters, Martine Oliveira, Tulio de Alcantara, Luiz Carlos Júnior Grossman, Zehava Sloot, Peter Otelea, Dan Paraschiv, Simona Boucher, Charles Camacho, Ricardo J Vandamme, Anne-Mieke |
| dc.subject.decs.pt_BR.fl_str_mv |
Bases de Dados Factuais Software Viroses Sistemas de Gerenciamento de Base de Dados Humanos Viroses/diagnóstico Viroses/terapia Viroses/alergia |
| topic |
Bases de Dados Factuais Software Viroses Sistemas de Gerenciamento de Base de Dados Humanos Viroses/diagnóstico Viroses/terapia Viroses/alergia |
| description |
Institute for Medical Research, KU Leuven. Department of Microbiology and Immunology. Leuven, Belgium / Mybiodata, Biomedical IT solutions. Rotselaar, Belgium |
| publishDate |
2013 |
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2013 |
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2014-11-13T14:27:00Z |
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2014-11-13T14:27:00Z |
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info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/article |
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LIBIN, P. et al. RegaDB: community-driven data management and analysis for infectious diseases. Bioinformatics, v. 29, n. 11, p. 1477-1480, 2013. |
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https://www.arca.fiocruz.br/handle/icict/8827 |
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1367-4811 |
| dc.identifier.doi.none.fl_str_mv |
10.1093/bioinformatics/btt162 |
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LIBIN, P. et al. RegaDB: community-driven data management and analysis for infectious diseases. Bioinformatics, v. 29, n. 11, p. 1477-1480, 2013. 1367-4811 10.1093/bioinformatics/btt162 |
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Oxford University Press |
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Oxford University Press |
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