Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?

Detalhes bibliográficos
Autor(a) principal: Victoria, Matías
Data de Publicação: 2009
Outros Autores: Colina, Rodney, Miagostovich, Marize Pereira, Leite, José Paulo Gagliardi, Cristina, Juan
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/27970
Resumo: Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ. Brasil.
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spelling Victoria, MatíasColina, RodneyMiagostovich, Marize PereiraLeite, José Paulo GagliardiCristina, Juan2018-08-07T12:54:40Z2018-08-07T12:54:40Z2009VICTORIA, Matías. et al. Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?. BMC Research Notes.v.2, n.176, 6p, 2009.1756-0500https://www.arca.fiocruz.br/handle/icict/2797010.1186/1756-0500-2-176engBioMed CentralGenoma do NorovírusFilogeniaNorovirys genomePhylogenyPhylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleFundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ. Brasil.Centro de Investigaciones Nucleares. Facultad de Ciencias. Laboratorio de Virología Molecular. Montevideo, Uruguay.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ. Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ. Brasil.Centro de Investigaciones Nucleares. Facultad de Ciencias. Laboratorio de Virología Molecular. Montevideo, Uruguay.Discrete RNA structures such as cis-acting replication elements (cre) in the coding region of RNA virus genomes create characteristic suppression of synonymous site variability (SSSV). Different phylogenetic methods have been developed to predict secondary structures in RNA viruses, for high-resolution thermodynamic scanning and for detecting SSSV. These approaches have been successfully in predicting cis-acting signals in different members of the family Picornaviridae and Caliciviridae. In order to gain insight into the identification of cis-acting signals in viruses whose mechanisms of replication are currently unknown, we performed a phylogenetic analysis of complete genome sequences from 49 Human Norovirus (NoV) strains.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/27970/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALmatias_victoria_etal_IOC_2009.pdfmatias_victoria_etal_IOC_2009.pdfapplication/pdf609475https://www.arca.fiocruz.br/bitstream/icict/27970/2/matias_victoria_etal_IOC_2009.pdfe13654f32c1ee4c15b4766c20c816053MD52TEXTmatias_victoria_etal_IOC_2009.pdf.txtmatias_victoria_etal_IOC_2009.pdf.txtExtracted 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dc.title.pt_BR.fl_str_mv Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?
title Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?
spellingShingle Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?
Victoria, Matías
Genoma do Norovírus
Filogenia
Norovirys genome
Phylogeny
title_short Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?
title_full Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?
title_fullStr Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?
title_full_unstemmed Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?
title_sort Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?
author Victoria, Matías
author_facet Victoria, Matías
Colina, Rodney
Miagostovich, Marize Pereira
Leite, José Paulo Gagliardi
Cristina, Juan
author_role author
author2 Colina, Rodney
Miagostovich, Marize Pereira
Leite, José Paulo Gagliardi
Cristina, Juan
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Victoria, Matías
Colina, Rodney
Miagostovich, Marize Pereira
Leite, José Paulo Gagliardi
Cristina, Juan
dc.subject.other.pt_BR.fl_str_mv Genoma do Norovírus
Filogenia
topic Genoma do Norovírus
Filogenia
Norovirys genome
Phylogeny
dc.subject.en.pt_BR.fl_str_mv Norovirys genome
Phylogeny
description Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ. Brasil.
publishDate 2009
dc.date.issued.fl_str_mv 2009
dc.date.accessioned.fl_str_mv 2018-08-07T12:54:40Z
dc.date.available.fl_str_mv 2018-08-07T12:54:40Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv VICTORIA, Matías. et al. Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?. BMC Research Notes.v.2, n.176, 6p, 2009.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/27970
dc.identifier.issn.pt_BR.fl_str_mv 1756-0500
dc.identifier.doi.none.fl_str_mv 10.1186/1756-0500-2-176
identifier_str_mv VICTORIA, Matías. et al. Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?. BMC Research Notes.v.2, n.176, 6p, 2009.
1756-0500
10.1186/1756-0500-2-176
url https://www.arca.fiocruz.br/handle/icict/27970
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.publisher.none.fl_str_mv BioMed Central
publisher.none.fl_str_mv BioMed Central
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
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reponame_str Repositório Institucional da FIOCRUZ (ARCA)
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