Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host

Detalhes bibliográficos
Autor(a) principal: Rodrigues, Carolina Munari
Data de Publicação: 2019
Outros Autores: Takita, Marco Aurélio, Silva, Nicholas Vinicius, Ribeiro-Alves, Marcelo, Machado, Marcos Antonio
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
DOI: 10.1186/s12864-019-5911-y
Texto Completo: https://www.arca.fiocruz.br/handle/icict/34690
Resumo: Centro APTA Citros Sylvio Moreira. Laboratório de Biotecnologia. Cordeirópolis, SP, Brasil.
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spelling Rodrigues, Carolina MunariTakita, Marco AurélioSilva, Nicholas ViniciusRibeiro-Alves, MarceloMachado, Marcos Antonio2019-08-09T14:21:09Z2019-08-09T14:21:09Z2019RODRIGUES, Carolina Munari et al. Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host. BMC Genomics, v. 20, p. 1-12, 2019.1471-2334https://www.arca.fiocruz.br/handle/icict/3469010.1186/s12864-019-5911-y1471-2334engBMC GenomicComparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same hostinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleCentro APTA Citros Sylvio Moreira. Laboratório de Biotecnologia. Cordeirópolis, SP, Brasil.Centro APTA Citros Sylvio Moreira. Laboratório de Biotecnologia. Cordeirópolis, SP, Brasil.Universidade Estadual de Campinas. Laboratório de Genômica e BioEnergia. Campinas, SP, Brasil.Fundação Oswaldo Cruz. Instituto Nacional de Infectologia Evandro Chagas. Laboratório de Pesquisa Clínica em DST/AIDS. Rio de Janeiro, RJ, Brasil.Centro APTA Citros Sylvio Moreira. Laboratório de Biotecnologia. Cordeirópolis, SP, Brasil.Background: Citrus are among the most important crops in the world. However, there are many diseases that affect Citrus caused by different pathogens. Citrus also hosts many symbiotic microorganisms in a relationship that may be advantageous for both organisms. The fungi Phyllosticta citricarpa, responsible for citrus black spot, and Phyllosticta capitalensis, an endophytic species, are examples of closely related species with different behavior in citrus. Both species are always biologically associated and are morphologically very similar, and comparing their genomes could help understanding the different lifestyles. In this study, a comparison was carried to identify genetic differences that could help us to understand the biology of P. citricarpa and P. capitalensis. Results: Drafts genomes were assembled with sizes close to 33 Mb for both fungi, carrying 15,206 and 14,797 coding sequences for P. citricarpa and P. capitalensis, respectively. Even though the functional categories of these coding sequences is similar, enrichment analysis showed that the pathogenic species presents growth and development genes that may be necessary for the pathogenicity of P. citricarpa. On the other hand, family expansion analyses showed the plasticity of the genome of these species. Particular families are expanded in the genome of an ancestor of P. capitalensis and a recent expansion can also be detected among this species. Additionally, evolution could be driven by environmental cues in P. citricarpa. Conclusions: This work demonstrated genomic differences between P. citricarpa and P. capitalensis. Although the idea that these differences could explain the different lifestyles of these fungi, we were not able to confirm this hypothesis. Genome evolution seems to be of real importance among the Phyllosticta isolates and it is leading to different biological characteristics of these species.Pathogenic speciesEndophytic speciesCitrus black spotFunctional enrichment analysisPhylogenyGene family expansioninfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-83104https://www.arca.fiocruz.br/bitstream/icict/34690/1/license.txt79178e5f2a0eb066867a274556814938MD51ORIGINALve_Rodrigues_Carolina_etal_INI_2019.pdfve_Rodrigues_Carolina_etal_INI_2019.pdfapplication/pdf1565750https://www.arca.fiocruz.br/bitstream/icict/34690/2/ve_Rodrigues_Carolina_etal_INI_2019.pdf33079cefe78686e732952ae7fe443823MD52TEXTve_Rodrigues_Carolina_etal_INI_2019.pdf.txtve_Rodrigues_Carolina_etal_INI_2019.pdf.txtExtracted 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dc.title.pt_BR.fl_str_mv Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host
title Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host
spellingShingle Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host
Rodrigues, Carolina Munari
Pathogenic species
Endophytic species
Citrus black spot
Functional enrichment analysis
Phylogeny
Gene family expansion
title_short Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host
title_full Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host
title_fullStr Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host
title_full_unstemmed Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host
title_sort Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host
author Rodrigues, Carolina Munari
author_facet Rodrigues, Carolina Munari
Takita, Marco Aurélio
Silva, Nicholas Vinicius
Ribeiro-Alves, Marcelo
Machado, Marcos Antonio
author_role author
author2 Takita, Marco Aurélio
Silva, Nicholas Vinicius
Ribeiro-Alves, Marcelo
Machado, Marcos Antonio
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Rodrigues, Carolina Munari
Takita, Marco Aurélio
Silva, Nicholas Vinicius
Ribeiro-Alves, Marcelo
Machado, Marcos Antonio
dc.subject.en.pt_BR.fl_str_mv Pathogenic species
Endophytic species
Citrus black spot
Functional enrichment analysis
Phylogeny
Gene family expansion
topic Pathogenic species
Endophytic species
Citrus black spot
Functional enrichment analysis
Phylogeny
Gene family expansion
description Centro APTA Citros Sylvio Moreira. Laboratório de Biotecnologia. Cordeirópolis, SP, Brasil.
publishDate 2019
dc.date.accessioned.fl_str_mv 2019-08-09T14:21:09Z
dc.date.available.fl_str_mv 2019-08-09T14:21:09Z
dc.date.issued.fl_str_mv 2019
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv RODRIGUES, Carolina Munari et al. Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host. BMC Genomics, v. 20, p. 1-12, 2019.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/34690
dc.identifier.issn.pt_BR.fl_str_mv 1471-2334
dc.identifier.doi.none.fl_str_mv 10.1186/s12864-019-5911-y
dc.identifier.eissn.none.fl_str_mv 1471-2334
identifier_str_mv RODRIGUES, Carolina Munari et al. Comparative genome analysis of Phyllosticta citricarpa and Phyllosticta capitalensis, two fungi species that share the same host. BMC Genomics, v. 20, p. 1-12, 2019.
1471-2334
10.1186/s12864-019-5911-y
url https://www.arca.fiocruz.br/handle/icict/34690
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv BMC Genomic
publisher.none.fl_str_mv BMC Genomic
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
instacron:FIOCRUZ
instname_str Fundação Oswaldo Cruz (FIOCRUZ)
instacron_str FIOCRUZ
institution FIOCRUZ
reponame_str Repositório Institucional da FIOCRUZ (ARCA)
collection Repositório Institucional da FIOCRUZ (ARCA)
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