Genome Detective: an automated system for virus identification from high-throughput sequencing data
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2018 |
| Outros Autores: | , , , , , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Repositório Institucional da FIOCRUZ (ARCA) |
| Texto Completo: | https://www.arca.fiocruz.br/handle/icict/29703 |
Resumo: | South African Medical Research Council (MRC-RFA-UFSP-01-2013/UKZN HIVEPI), a Royal Society Newton Advanced Fellowship (TdO), the VIROGENESIS project receives funding from the European Union’s Horizon 2020 Research and Innovation Program (under Grant Agreement no. 634650) and the National Institutes of Health Common Fund, grant number U24HG006941 |
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Vilsker, MichaelMoosa, YumnaNooij, SamFonseca, VagnerGhysens, YoikaDumon, KorneelPauwels, RafAlcantara, Luiz Carlos JúniorVandamme, Anne-MiekeEynden, Ewout VandenDeforche, KoenOliveira, Tulio de2018-10-24T17:02:13Z2018-10-24T17:02:13Z2018VILSKER, M. et al. Genome Detective: an automated system for virus identification from high-throughput sequencing data. Bioinformatics, p. 1–3, 2018.1367-4803https://www.arca.fiocruz.br/handle/icict/29703South African Medical Research Council (MRC-RFA-UFSP-01-2013/UKZN HIVEPI), a Royal Society Newton Advanced Fellowship (TdO), the VIROGENESIS project receives funding from the European Union’s Horizon 2020 Research and Innovation Program (under Grant Agreement no. 634650) and the National Institutes of Health Common Fund, grant number U24HG006941Emweb bvba. Herent, Belgium.University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. Nelson R Mandela School of Medicine. College of Health Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa.The Dutch National Institute for Public Health and the Environment. Bilthoven, The Netherlands.University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. Nelson R Mandela School of Medicine. College of Health Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa / Universidade Federal de Minas Gerais. Instituto de Ciências Biológicas. Belo Horizonte, MG, Brasil / Fundação Oswaldo Cruz. Instituto Gonçalo Moniz. Laboratório de Hematologia, Genética e Biologia Computacional. Salvador, BA, Brasil.Emweb bvba. Herent, Belgium.Emweb bvba. Herent, Belgium.Emweb bvba. Herent, Belgium.Universidade Federal de Minas Gerais. Instituto de Ciências Biológicas. Belo Horizonte, MG, Brasil / Fundação Oswaldo Cruz. Instituto Gonçalo Moniz. Laboratório de Hematologia, Genética e Biologia Computacional. Salvador, BA, Brasil / Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Flavivírus. Rio de Janeiro, RJ, Brasil.Rega Institute for Medical Research. KU Leuven. Department of Microbiology and Immunology. Clinical and Epidemiological Virology. Leuven, Belgium.Rega Institute for Medical Research. KU Leuven. Department of Microbiology and Immunology. Clinical and Epidemiological Virology. Leuven, Belgium / Universidade Nova de Lisboa. Instituto de Higiene e Medicina Tropical. Health and Tropical Medicine. Unidade de Microbiologia. Lisbon, Portugal.Emweb bvba. Herent, Belgium.University of KwaZulu-Natal. School of Laboratory Medicine and Medical Sciences. Nelson R Mandela School of Medicine. College of Health Sciences. KwaZulu-Natal Research Innovation and Sequencing Platform. Durban, South Africa.Genome Detective is an easy to use web-based software application that assembles the genomes of viruses quickly and accurately. The application uses a novel alignment method that constructs genomes by reference-based linking of de novo contigs by combining amino-acids and nucleotide scores. The software was optimized using synthetic datasets to represent the great diversity of virus genomes. The application was then validated with next generation sequencing data of hundreds of viruses. User time is minimal and it is limited to the time required to upload the data.engOxford University PressVirusSistemas automatizados de registros médicosSoftwareAplicativos móveisGenoma viralVirusMedical Records Systems, ComputerizedSoftwareMobile ApplicationsGenome, viralGenome Detective: an automated system for virus identification from high-throughput sequencing datainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/29703/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALVilsker M Genome...2018.pdfVilsker M Genome...2018.pdfapplication/pdf188021https://www.arca.fiocruz.br/bitstream/icict/29703/2/Vilsker%20M%20Genome...2018.pdf6e033cec3fa3935db76c651a7ee16c6fMD52TEXTVilsker M Genome...2018.pdf.txtVilsker M 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| dc.title.pt_BR.fl_str_mv |
Genome Detective: an automated system for virus identification from high-throughput sequencing data |
| title |
Genome Detective: an automated system for virus identification from high-throughput sequencing data |
| spellingShingle |
Genome Detective: an automated system for virus identification from high-throughput sequencing data Vilsker, Michael Virus Sistemas automatizados de registros médicos Software Aplicativos móveis Genoma viral Virus Medical Records Systems, Computerized Software Mobile Applications Genome, viral |
| title_short |
Genome Detective: an automated system for virus identification from high-throughput sequencing data |
| title_full |
Genome Detective: an automated system for virus identification from high-throughput sequencing data |
| title_fullStr |
Genome Detective: an automated system for virus identification from high-throughput sequencing data |
| title_full_unstemmed |
Genome Detective: an automated system for virus identification from high-throughput sequencing data |
| title_sort |
Genome Detective: an automated system for virus identification from high-throughput sequencing data |
| author |
Vilsker, Michael |
| author_facet |
Vilsker, Michael Moosa, Yumna Nooij, Sam Fonseca, Vagner Ghysens, Yoika Dumon, Korneel Pauwels, Raf Alcantara, Luiz Carlos Júnior Vandamme, Anne-Mieke Eynden, Ewout Vanden Deforche, Koen Oliveira, Tulio de |
| author_role |
author |
| author2 |
Moosa, Yumna Nooij, Sam Fonseca, Vagner Ghysens, Yoika Dumon, Korneel Pauwels, Raf Alcantara, Luiz Carlos Júnior Vandamme, Anne-Mieke Eynden, Ewout Vanden Deforche, Koen Oliveira, Tulio de |
| author2_role |
author author author author author author author author author author author |
| dc.contributor.author.fl_str_mv |
Vilsker, Michael Moosa, Yumna Nooij, Sam Fonseca, Vagner Ghysens, Yoika Dumon, Korneel Pauwels, Raf Alcantara, Luiz Carlos Júnior Vandamme, Anne-Mieke Eynden, Ewout Vanden Deforche, Koen Oliveira, Tulio de |
| dc.subject.other.pt_BR.fl_str_mv |
Virus Sistemas automatizados de registros médicos Software Aplicativos móveis Genoma viral |
| topic |
Virus Sistemas automatizados de registros médicos Software Aplicativos móveis Genoma viral Virus Medical Records Systems, Computerized Software Mobile Applications Genome, viral |
| dc.subject.en.pt_BR.fl_str_mv |
Virus Medical Records Systems, Computerized Software Mobile Applications Genome, viral |
| description |
South African Medical Research Council (MRC-RFA-UFSP-01-2013/UKZN HIVEPI), a Royal Society Newton Advanced Fellowship (TdO), the VIROGENESIS project receives funding from the European Union’s Horizon 2020 Research and Innovation Program (under Grant Agreement no. 634650) and the National Institutes of Health Common Fund, grant number U24HG006941 |
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2018 |
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2018-10-24T17:02:13Z |
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2018-10-24T17:02:13Z |
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2018 |
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VILSKER, M. et al. Genome Detective: an automated system for virus identification from high-throughput sequencing data. Bioinformatics, p. 1–3, 2018. |
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https://www.arca.fiocruz.br/handle/icict/29703 |
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1367-4803 |
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VILSKER, M. et al. Genome Detective: an automated system for virus identification from high-throughput sequencing data. Bioinformatics, p. 1–3, 2018. 1367-4803 |
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