Detection of a SARS-CoV-2 variant of concern in South Africa

Tegally, Houriiyiah; Wilkinson, Eduan; Giovanetti, Marta; Iranzadeh, Arash; Fonseca, Vagner; Giandhari, Jennifer; Doolabh, Deelan; Pillay, Sureshnee; San, Emmanuel James; Msomi, Nokukhanya; Mlisana, Koleka; von Gottberg, Anne; Walaza, Sibongile; Allam, Mushal; Ismail9, Arshad; Mohale, Thabo; Glass, Allison J. G; Engelbrecht, Susan; Van Zyl, Gert; Preiser, Wolgang; Petruccione, Francesco; Sigal, Alex; Hardie, Diana; Marais, Gert; Hsiao, Nei-yuan; Korsman, Stephen; Davies, Mary-Ann; Tyers, Lynn; Mudau, Innocent; York, Denis; Maslo, Caroline; Goedhals, Dominique; Abrahams, Shareef; Laguda-Akingba, Oluwakemi; Alisoltani-Dehkord, Arghavan; Godzik, Adam; Wibmer, Constantinos Kurt; Sewell, Bryan Trevor; Lourenço, José; Alcantara, Luiz Carlos Junior; Pond, Sergei L. Kosakovsky; Weaver, Steven; Martin, Dareen; Lessells, Richard J.; Bhiman, JInal N.; Williamson, Carolyn; Oliveira, Tulio de

Detection of a SARS-CoV-2 variant of concern in South Africa

Detalhes bibliográficos
Autor(a) principal:	Tegally, Houriiyiah
Data de Publicação:	2021
Outros Autores:	Wilkinson, Eduan, Giovanetti, Marta, Iranzadeh, Arash, Fonseca, Vagner, Giandhari, Jennifer, Doolabh, Deelan, Pillay, Sureshnee, San, Emmanuel James, Msomi, Nokukhanya, Mlisana, Koleka, von Gottberg, Anne, Walaza, Sibongile, Allam, Mushal, Ismail9, Arshad, Mohale, Thabo, Glass, Allison J. G, Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolgang, Petruccione, Francesco, Sigal, Alex, Hardie, Diana, Marais, Gert, Hsiao, Nei-yuan, Korsman, Stephen, Davies, Mary-Ann, Tyers, Lynn, Mudau, Innocent, York, Denis, Maslo, Caroline, Goedhals, Dominique, Abrahams, Shareef, Laguda-Akingba, Oluwakemi, Alisoltani-Dehkord, Arghavan, Godzik, Adam, Wibmer, Constantinos Kurt, Sewell, Bryan Trevor, Lourenço, José, Alcantara, Luiz Carlos Junior, Pond, Sergei L. Kosakovsky, Weaver, Steven, Martin, Dareen, Lessells, Richard J., Bhiman, JInal N., Williamson, Carolyn, Oliveira, Tulio de
Tipo de documento:	Artigo
Idioma:	eng
Título da fonte:	Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo:	https://www.arca.fiocruz.br/handle/icict/46649
Resumo:	KwaZulu–Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences. University of KwaZulu–Natal. Durban, South Africa.

Metadados do item

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network_acronym_str	CRUZ
network_name_str	Repositório Institucional da FIOCRUZ (ARCA)
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spelling	Tegally, HouriiyiahWilkinson, EduanGiovanetti, MartaIranzadeh, ArashFonseca, VagnerGiandhari, JenniferDoolabh, DeelanPillay, SureshneeSan, Emmanuel JamesMsomi, NokukhanyaMlisana, Kolekavon Gottberg, AnneWalaza, SibongileAllam, MushalIsmail9, ArshadMohale, ThaboGlass, Allison J. GEngelbrecht, SusanVan Zyl, GertPreiser, WolgangPetruccione, FrancescoSigal, AlexHardie, DianaMarais, GertHsiao, Nei-yuanKorsman, StephenDavies, Mary-AnnTyers, LynnMudau, InnocentYork, DenisMaslo, CarolineGoedhals, DominiqueAbrahams, ShareefLaguda-Akingba, OluwakemiAlisoltani-Dehkord, ArghavanGodzik, AdamWibmer, Constantinos KurtSewell, Bryan TrevorLourenço, JoséAlcantara, Luiz Carlos JuniorPond, Sergei L. KosakovskyWeaver, StevenMartin, DareenLessells, Richard J.Bhiman, JInal N.Williamson, CarolynOliveira, Tulio de2021-04-12T18:25:57Z2021-04-12T18:25:57Z2021TEGALLY, Houriiyah et al. Detection of a SARS-CoV-2 variant of concern in South Africa. Nature, p. 1-22, Mar. 2021.1476-4687https://www.arca.fiocruz.br/handle/icict/4664910.1038/s41586-021-03402-9engNatureSARS-CoV-2VarianteÁfrica do SulDetecçãoSARS-CoV-2VariantSouth AfricaDetectionDetection of a SARS-CoV-2 variant of concern in South Africainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleKwaZulu–Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences. University of KwaZulu–Natal. Durban, South Africa.KwaZulu–Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences. University of KwaZulu–Natal. Durban, South Africa.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Flavivírus. Rio de Janeiro, RJ, Brasil / Universidade Federal de Minas Gerais. Laboratório de Genética Celular e Molecular. BeloHorizonte, MG, Brasil. rComputational Biology Division, Department of Integrative Biomedical Sciences, University of Cape Town. Cape Town, South Africa.KwaZulu–Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences. University of KwaZulu–Natal. Durban, South Africa / Universidade Federal de Minas Gerais. Laboratório de Genética Celular e Molecular. BeloHorizonte, MG, Brasil.Computational Biology Division, Department of Integrative Biomedical Sciences, University of Cape Town. Cape Town, South Africa.Division of Medical Virology, Institute of Infectious Disease and Molecular Medicine, University of Cape Town. Cape Town, South Africa.Computational Biology Division, Department of Integrative Biomedical Sciences, University of Cape Town. Cape Town, South Africa.Computational Biology Division, Department of Integrative Biomedical Sciences, University of Cape Town. Cape Town, South Africa.Computational Biology Division, Department of Integrative Biomedical Sciences, University of Cape Town. Cape Town, South Africa..NHLS. Johannesburg, South Africa / Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa.National Institute for Communicable Diseases, NHLS. Johannesburg, South Africa / School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.National Institute for Communicable Diseases, NHLS. Johannesburg, South Africa / School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South AfricaNational Institute for Communicable Diseases, NHLS. Johannesburg, South Africa.National Institute for Communicable Diseases, NHLS. Johannesburg, South AfricaNational Institute for Communicable Diseases, NHLS. Johannesburg, South AfricaSchool of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa / Department of Molecular Pathology, Lancet Laboratories, Johannesburg, South Africa.Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University and NHLS Tygerberg Hospital, Cape Town, South Africa.Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University and NHLS Tygerberg Hospital, Cape Town, South Africa.Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University and NHLS Tygerberg Hospital, Cape Town, South Africa.Centre for Quantum Technology, University of KwaZulu–Natal, Durban, South Africa / National Institute for Theoretical Physics (NITheP), University of KwaZulu–Natal, Durban, South Africa.Africa Health Research Institute, Durban, South Africa / School of Laboratory Medicine and Medical Sciences, University of KwaZulu– Natal, Durban, South Africa / Max Planck Institute for Infection Biology, Berlin, Germany.Division of Medical Virology, NHLS Groote Schuur Hospital, University of Cape Town.Cape Town, South Africa.Division of Medical Virology, NHLS Groote Schuur Hospital, University of Cape Town.Cape Town, South Africa.Division of Medical Virology, NHLS Groote Schuur Hospital, University of Cape Town.Cape Town, South Africa.Division of Medical Virology, NHLS Groote Schuur Hospital, University of Cape Town.Cape Town, South Africa.Centre for Infectious Disease Epidemiology and Research, University of Cape Town. Cape Town, South Africa / Centre for Infectious Disease Epidemiology and Research, University of Cape Town, Cape Town, South Africa..Centre for Infectious Disease Epidemiology and Research, University of Cape Town, Cape Town, South Africa.Centre for Infectious Disease Epidemiology and Research, University of Cape Town, Cape Town, South Africa.Molecular Diagnostics Services, Durban, South Africa.Molecular Diagnostics Services, Durban, South Africa.Division of Virology, NHLS Universitas Academic Laboratories, University of The Free State, Bloemfontein, South Africa.NHLS, Port Elizabeth, South Africa.NHLS, Port Elizabeth, South Africa / Department of Laboratory Medicine and Pathology, Faculty of Health Sciences, Walter Sisulu University, Mthatha, South Africa.Division of Medical Virology, Department of Pathology, University of Cape Town, Cape Town, South Africa./ Division of Biomedical Sciences, University of California Riverside School of Medicine, Riverside, CA, USA.Division of Biomedical Sciences, University of California Riverside School of Medicine, Riverside, CA, USA.National Institute for Communicable Diseases, NHLS, Johannesburg, South Africa.National Institute for Communicable Diseases, NHLS, Johannesburg, South Africa.Department of Zoology, University of Oxford, Oxford, UK.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Flavivírus. Rio de Janeiro, RJ, Brasil / Universidade Federal de Minas Gerais. Laboratório de Genética Celular e Molecular. BeloHorizonte, MG, Brasil.Institute for Genomics and Evolutionary Medicine. Temple University, Philadelphia, PA, USA.Institute for Genomics and Evolutionary Medicine. Temple University, Philadelphia, PA, USA.Computational Biology Division, Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, South Africa / Division of Medical Virology, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South AfricaKwaZulu–Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, University of KwaZulu–Natal, Durban, South Africa / KwaZulu–Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, University of KwaZulu–Natal, Durban, South Africa.National Institute for Communicable Diseases, NHLS, Johannesburg, South Africa / School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa.Division of Medical Virology, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa / Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa / Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa.KwaZulu–Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences. University of KwaZulu–Natal. Durban, South Africa / Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa / Department of Global Health, University of Washington, Seattle, WA, USA.Continued uncontrolled transmission of SARS-CoV-2 in many parts of the world is creating conditions for substantial evolutionary changes to the virus1,2. Here we describe a newly arisen lineage of SARS-CoV-2 (designated 501Y.V2; also known as B.1.351 or 20H) that is defined by eight mutations in the spike protein, including three substitutions (K417N, E484K and N501Y) at residues in its receptor-binding domain that may have functional importance3,4,5. This lineage was identified in South Africa after the first wave of the epidemic in a severely affected metropolitan area (Nelson Mandela Bay) that is located on the coast of the Eastern Cape province. This lineage spread rapidly, and became dominant in Eastern Cape, Western Cape and KwaZulu–Natal provinces within weeks. Although the full import of the mutations is yet to be determined, the genomic data—which show rapid expansion and displacement of other lineages in several regions—suggest that this lineage is associated with a selection advantage that most plausibly results from increased transmissibility or immune escape.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/46649/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALLuizCarlos_JuniorAlcantara_etal_IOC_2021.pdfLuizCarlos_JuniorAlcantara_etal_IOC_2021.pdfapplication/pdf24953680https://www.arca.fiocruz.br/bitstream/icict/46649/2/LuizCarlos_JuniorAlcantara_etal_IOC_2021.pdfb9d50f5f06c75f2cc976dce706fea53bMD52TEXTLuizCarlos_JuniorAlcantara_etal_IOC_2021.pdf.txtLuizCarlos_JuniorAlcantara_etal_IOC_2021.pdf.txtExtracted 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dc.title.pt_BR.fl_str_mv	Detection of a SARS-CoV-2 variant of concern in South Africa
title	Detection of a SARS-CoV-2 variant of concern in South Africa
spellingShingle	Detection of a SARS-CoV-2 variant of concern in South Africa Tegally, Houriiyiah SARS-CoV-2 Variante África do Sul Detecção SARS-CoV-2 Variant South Africa Detection
title_short	Detection of a SARS-CoV-2 variant of concern in South Africa
title_full	Detection of a SARS-CoV-2 variant of concern in South Africa
title_fullStr	Detection of a SARS-CoV-2 variant of concern in South Africa
title_full_unstemmed	Detection of a SARS-CoV-2 variant of concern in South Africa
title_sort	Detection of a SARS-CoV-2 variant of concern in South Africa
author	Tegally, Houriiyiah
author_facet	Tegally, Houriiyiah Wilkinson, Eduan Giovanetti, Marta Iranzadeh, Arash Fonseca, Vagner Giandhari, Jennifer Doolabh, Deelan Pillay, Sureshnee San, Emmanuel James Msomi, Nokukhanya Mlisana, Koleka von Gottberg, Anne Walaza, Sibongile Allam, Mushal Ismail9, Arshad Mohale, Thabo Glass, Allison J. G Engelbrecht, Susan Van Zyl, Gert Preiser, Wolgang Petruccione, Francesco Sigal, Alex Hardie, Diana Marais, Gert Hsiao, Nei-yuan Korsman, Stephen Davies, Mary-Ann Tyers, Lynn Mudau, Innocent York, Denis Maslo, Caroline Goedhals, Dominique Abrahams, Shareef Laguda-Akingba, Oluwakemi Alisoltani-Dehkord, Arghavan Godzik, Adam Wibmer, Constantinos Kurt Sewell, Bryan Trevor Lourenço, José Alcantara, Luiz Carlos Junior Pond, Sergei L. Kosakovsky Weaver, Steven Martin, Dareen Lessells, Richard J. Bhiman, JInal N. Williamson, Carolyn Oliveira, Tulio de
author_role	author
author2	Wilkinson, Eduan Giovanetti, Marta Iranzadeh, Arash Fonseca, Vagner Giandhari, Jennifer Doolabh, Deelan Pillay, Sureshnee San, Emmanuel James Msomi, Nokukhanya Mlisana, Koleka von Gottberg, Anne Walaza, Sibongile Allam, Mushal Ismail9, Arshad Mohale, Thabo Glass, Allison J. G Engelbrecht, Susan Van Zyl, Gert Preiser, Wolgang Petruccione, Francesco Sigal, Alex Hardie, Diana Marais, Gert Hsiao, Nei-yuan Korsman, Stephen Davies, Mary-Ann Tyers, Lynn Mudau, Innocent York, Denis Maslo, Caroline Goedhals, Dominique Abrahams, Shareef Laguda-Akingba, Oluwakemi Alisoltani-Dehkord, Arghavan Godzik, Adam Wibmer, Constantinos Kurt Sewell, Bryan Trevor Lourenço, José Alcantara, Luiz Carlos Junior Pond, Sergei L. Kosakovsky Weaver, Steven Martin, Dareen Lessells, Richard J. Bhiman, JInal N. Williamson, Carolyn Oliveira, Tulio de
author2_role	author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author
dc.contributor.author.fl_str_mv	Tegally, Houriiyiah Wilkinson, Eduan Giovanetti, Marta Iranzadeh, Arash Fonseca, Vagner Giandhari, Jennifer Doolabh, Deelan Pillay, Sureshnee San, Emmanuel James Msomi, Nokukhanya Mlisana, Koleka von Gottberg, Anne Walaza, Sibongile Allam, Mushal Ismail9, Arshad Mohale, Thabo Glass, Allison J. G Engelbrecht, Susan Van Zyl, Gert Preiser, Wolgang Petruccione, Francesco Sigal, Alex Hardie, Diana Marais, Gert Hsiao, Nei-yuan Korsman, Stephen Davies, Mary-Ann Tyers, Lynn Mudau, Innocent York, Denis Maslo, Caroline Goedhals, Dominique Abrahams, Shareef Laguda-Akingba, Oluwakemi Alisoltani-Dehkord, Arghavan Godzik, Adam Wibmer, Constantinos Kurt Sewell, Bryan Trevor Lourenço, José Alcantara, Luiz Carlos Junior Pond, Sergei L. Kosakovsky Weaver, Steven Martin, Dareen Lessells, Richard J. Bhiman, JInal N. Williamson, Carolyn Oliveira, Tulio de
dc.subject.other.pt_BR.fl_str_mv	SARS-CoV-2 Variante África do Sul Detecção
topic	SARS-CoV-2 Variante África do Sul Detecção SARS-CoV-2 Variant South Africa Detection
dc.subject.en.pt_BR.fl_str_mv	SARS-CoV-2 Variant South Africa Detection
description	KwaZulu–Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences. University of KwaZulu–Natal. Durban, South Africa.
publishDate	2021
dc.date.accessioned.fl_str_mv	2021-04-12T18:25:57Z
dc.date.available.fl_str_mv	2021-04-12T18:25:57Z
dc.date.issued.fl_str_mv	2021
dc.type.status.fl_str_mv	info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv	info:eu-repo/semantics/article
format	article
status_str	publishedVersion
dc.identifier.citation.fl_str_mv	TEGALLY, Houriiyah et al. Detection of a SARS-CoV-2 variant of concern in South Africa. Nature, p. 1-22, Mar. 2021.
dc.identifier.uri.fl_str_mv	https://www.arca.fiocruz.br/handle/icict/46649
dc.identifier.issn.pt_BR.fl_str_mv	1476-4687
dc.identifier.doi.none.fl_str_mv	10.1038/s41586-021-03402-9
identifier_str_mv	TEGALLY, Houriiyah et al. Detection of a SARS-CoV-2 variant of concern in South Africa. Nature, p. 1-22, Mar. 2021. 1476-4687 10.1038/s41586-021-03402-9
url	https://www.arca.fiocruz.br/handle/icict/46649
dc.language.iso.fl_str_mv	eng
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dc.publisher.none.fl_str_mv	Nature
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Detection of a SARS-CoV-2 variant of concern in South Africa

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