Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene

Detalhes bibliográficos
Autor(a) principal: Machado, Lilian de Oliveira
Data de Publicação: 2020
Outros Autores: Vieira, Leila do Nascimento, Stefenon, Valdir Marcos, Faoro, Helisson, Pedrosa, Fábio de Oliveira, Guerra, Miguel Pedro, Nodari, Rubens Onofre
Tipo de documento: Artigo
Idioma: por
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/42480
Resumo: Universidade Federal de Santa Catarina. Centro de Ciências Agrárias. Departamento de Fitotecnia. Florianópolis, SC, Brasil.
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spelling Machado, Lilian de OliveiraVieira, Leila do NascimentoStefenon, Valdir MarcosFaoro, HelissonPedrosa, Fábio de OliveiraGuerra, Miguel PedroNodari, Rubens Onofre2020-07-30T23:40:53Z2020-07-30T23:40:53Z2020MACHADO, Lilian de Oliveira et al. Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene. Genetics and Molecular Biology, v.43, n.2, p. 1-14, 2020.1678-4685https://www.arca.fiocruz.br/handle/icict/4248010.1590/1678-4685-GMB-2018-03771678-4685porSociedade Brasileira de Genética.MyrtaceaeGuabirobaEvolution, MolecularPhylogeneticDNA Barcoding, TaxonomicGenome, PlastidMyrtalesEvolución MolecularCódigo de Barras del ADN TaxonómicoGenoma de PlastidiosEvolução MolecularCódigo de Barras de DNA TaxonômicoGenomas de PlastídeosMolecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 geneinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleUniversidade Federal de Santa Catarina. Centro de Ciências Agrárias. Departamento de Fitotecnia. Florianópolis, SC, Brasil.Universidade Federal do Paraná. Centro Politécnico. Curitiba, PR, Brasil.Universidade Federal de Santa Catarina. Centro de Ciências Agrárias. Departamento de Fitotecnia. Florianópolis, SC, Brasil. / Universidade Federal do Pampa. Campus São Gabriel. São Gabriel, RS, Brasil.Fundação Oswaldo Cruz. Instituto Carlos Chagas. Curitiba, PR, Brasil.Universidade Federal do Paraná. Centro Politécnico. Curitiba, PR, Brasil.Universidade Federal de Santa Catarina. Centro de Ciências Agrárias. Departamento de Fitotecnia. Florianópolis, SC, Brasil.Universidade Federal de Santa Catarina. Centro de Ciências Agrárias. Departamento de Fitotecnia. Florianópolis, SC, Brasil.Plastomes are very informative structures for comparative phylogenetic and evolutionary analyses. We sequenced and analyzed the complete plastome of Campomanesia xanthocarpa and compared its gene order, structure, and evolutionary characteristics within Myrtaceae. Analyzing 48 species of Myrtaceae, we identified six genes representing 'hotspots' of variability within the plastomes (ycf2, atpA, rpoC2, pcbE, ndhH and rps16), and performed phylogenetic analyses based on: (i) the ycf2 gene, (ii) all the six genes identified as 'hotspots' of variability, and (iii) the genes identified as 'hotspots' of variability, except the ycf2 gene. The structure, gene order, and gene content of the C. xanthocarpa plastome are similar to other Myrtaceae species. Phylogenetic analyses revealed the ycf2 gene as a promissing region for barcoding within this family, having also a robust phylogenetic signal. The synonymous and nonsynonymous substitution rates and the Ka/Ks ratio revealed low values for the ycf2 gene among C. xanthocarpa and the other 47 analyzed species of Myrtaceae, with moderate purifying selection acting on this gene. The average nucleotide identity (ANI) analysis of the whole plastomes produced phylogenetic trees supporting the monophyly of three Myrtaceae tribes. The findings of this study provide support for planning conservation, breeding, and biotechnological programs for this species.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/42480/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINAL1415-4757-GMB-43ok.pdf1415-4757-GMB-43ok.pdfapplication/pdf4745972https://www.arca.fiocruz.br/bitstream/icict/42480/2/1415-4757-GMB-43ok.pdf46e2bb2a628e005559804497fd551e8dMD52TEXT1415-4757-GMB-43ok.pdf.txt1415-4757-GMB-43ok.pdf.txtExtracted texttext/plain53480https://www.arca.fiocruz.br/bitstream/icict/42480/3/1415-4757-GMB-43ok.pdf.txt4f03bb46174cdf27ab66356fc41b0271MD53icict/424802020-07-31 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dc.title.pt_BR.fl_str_mv Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene
title Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene
spellingShingle Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene
Machado, Lilian de Oliveira
Myrtaceae
Guabiroba
Evolution, Molecular
Phylogenetic
DNA Barcoding, Taxonomic
Genome, Plastid
Myrtales
Evolución Molecular
Código de Barras del ADN Taxonómico
Genoma de Plastidios
Evolução Molecular
Código de Barras de DNA Taxonômico
Genomas de Plastídeos
title_short Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene
title_full Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene
title_fullStr Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene
title_full_unstemmed Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene
title_sort Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene
author Machado, Lilian de Oliveira
author_facet Machado, Lilian de Oliveira
Vieira, Leila do Nascimento
Stefenon, Valdir Marcos
Faoro, Helisson
Pedrosa, Fábio de Oliveira
Guerra, Miguel Pedro
Nodari, Rubens Onofre
author_role author
author2 Vieira, Leila do Nascimento
Stefenon, Valdir Marcos
Faoro, Helisson
Pedrosa, Fábio de Oliveira
Guerra, Miguel Pedro
Nodari, Rubens Onofre
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Machado, Lilian de Oliveira
Vieira, Leila do Nascimento
Stefenon, Valdir Marcos
Faoro, Helisson
Pedrosa, Fábio de Oliveira
Guerra, Miguel Pedro
Nodari, Rubens Onofre
dc.subject.other.pt_BR.fl_str_mv Myrtaceae
Guabiroba
topic Myrtaceae
Guabiroba
Evolution, Molecular
Phylogenetic
DNA Barcoding, Taxonomic
Genome, Plastid
Myrtales
Evolución Molecular
Código de Barras del ADN Taxonómico
Genoma de Plastidios
Evolução Molecular
Código de Barras de DNA Taxonômico
Genomas de Plastídeos
dc.subject.en.pt_BR.fl_str_mv Evolution, Molecular
Phylogenetic
DNA Barcoding, Taxonomic
Genome, Plastid
Myrtales
dc.subject.es.pt_BR.fl_str_mv Evolución Molecular
Código de Barras del ADN Taxonómico
Genoma de Plastidios
dc.subject.decs.pt_BR.fl_str_mv Evolução Molecular
Código de Barras de DNA Taxonômico
Genomas de Plastídeos
description Universidade Federal de Santa Catarina. Centro de Ciências Agrárias. Departamento de Fitotecnia. Florianópolis, SC, Brasil.
publishDate 2020
dc.date.accessioned.fl_str_mv 2020-07-30T23:40:53Z
dc.date.available.fl_str_mv 2020-07-30T23:40:53Z
dc.date.issued.fl_str_mv 2020
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv MACHADO, Lilian de Oliveira et al. Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene. Genetics and Molecular Biology, v.43, n.2, p. 1-14, 2020.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/42480
dc.identifier.issn.pt_BR.fl_str_mv 1678-4685
dc.identifier.doi.none.fl_str_mv 10.1590/1678-4685-GMB-2018-0377
dc.identifier.eissn.none.fl_str_mv 1678-4685
identifier_str_mv MACHADO, Lilian de Oliveira et al. Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene. Genetics and Molecular Biology, v.43, n.2, p. 1-14, 2020.
1678-4685
10.1590/1678-4685-GMB-2018-0377
url https://www.arca.fiocruz.br/handle/icict/42480
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Sociedade Brasileira de Genética.
publisher.none.fl_str_mv Sociedade Brasileira de Genética.
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
instacron:FIOCRUZ
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