A multivariate geostatistical framework for combining multiple indices of abundance for disease vectors and reservoirs: a case study of rattiness in a low-income urban Brazilian community

Detalhes bibliográficos
Autor(a) principal: Eyre, Max T.
Data de Publicação: 2020
Outros Autores: Pereira, Ticiana S. A. Carvalho, Souza, Fábio N., Khalilus, Hsein, Hacker, Kathryn P., Serrano, Soledad, Taylor, Joshua P., Reis, Mitermayer Galvão dos, Ko, Albert Icksang, Begon, Mike, Diggle, Peter J, Costa, Federico, Giorgi, Emanuele
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/44075
Resumo: Ministério da Ciência, Tecnologia e Inovação, the Conselho Nacional de Desenvolvimento Científico e Tecnológico; the Fundação de Amparo à Pesquisa do Estado da Bahia (grant no. 10206/20155); the Fundação Oswaldo Cruz; Research Councils UK, the Medical Research Council (grant nos. 1964635, MR/P024084/1 and MR/T029781/1); the Ministério da Saúde; the U.S. Department of Health and Human Services, the National Institutes of Health, the National Institute of Allergy and Infectious Diseases (grant nos. F31 AI114245, R01 AI052473, R01 TW009504, R25 TW009338 and U01 AI088752); the Secretaria Municipal de Saúde de Salvador-BA; and the Wellcome Trust (grant nos. 102330/Z/13/Z and 218987/Z/19/Z). MTE is in receipt of a studentship from the Medical Research Council, United Kingdom.
id CRUZ_a7582932058f5ab62e0e13c2e2f9de50
oai_identifier_str oai:www.arca.fiocruz.br:icict/44075
network_acronym_str CRUZ
network_name_str Repositório Institucional da FIOCRUZ (ARCA)
repository_id_str 2135
spelling Eyre, Max T.Pereira, Ticiana S. A. CarvalhoSouza, Fábio N.Khalilus, HseinHacker, Kathryn P.Serrano, SoledadTaylor, Joshua P.Reis, Mitermayer Galvão dosKo, Albert IcksangBegon, MikeDiggle, Peter JCosta, FedericoGiorgi, Emanuele2020-10-20T11:58:43Z2020-10-20T11:58:43Z2020EYRE, Max T. et al. A multivariate geostatistical framework for combining multiple indices of abundance for disease vectors and reservoirs: a case study of rattiness in a low-income urban Brazilian community. Journal of the Royal Society, Interface, 2020.1742-5689https://www.arca.fiocruz.br/handle/icict/4407510.1098/rsif.2020.0398Ministério da Ciência, Tecnologia e Inovação, the Conselho Nacional de Desenvolvimento Científico e Tecnológico; the Fundação de Amparo à Pesquisa do Estado da Bahia (grant no. 10206/20155); the Fundação Oswaldo Cruz; Research Councils UK, the Medical Research Council (grant nos. 1964635, MR/P024084/1 and MR/T029781/1); the Ministério da Saúde; the U.S. Department of Health and Human Services, the National Institutes of Health, the National Institute of Allergy and Infectious Diseases (grant nos. F31 AI114245, R01 AI052473, R01 TW009504, R25 TW009338 and U01 AI088752); the Secretaria Municipal de Saúde de Salvador-BA; and the Wellcome Trust (grant nos. 102330/Z/13/Z and 218987/Z/19/Z). MTE is in receipt of a studentship from the Medical Research Council, United Kingdom.Lancaster University Medical School. Centre for Health Informatics, Computing, and Statistics. Lancaster, UK / Liverpool School of Tropical Medicine. Liverpool, UK.Federal University of Bahia. Institute of Collective Health. Salvador, BA, Brazil.Federal University of Bahia. Institute of Collective Health. Salvador, BA, Brazil.Federal University of Bahia. Institute of Collective Health. Salvador, BA, Brazil / Swedish University of Agricultural Sciences. Umeå, Sweden.University of Pennsylvania. Philadelphia, PA, USA.Instituto de Investigaciones Forestales y Agropecuarias Bariloche.San Carlos de Bariloche, Río Negro, Argentina.Instituto de Investigaciones Forestales y Agropecuarias Bariloche.San Carlos de Bariloche, Río Negro, Argentina.Federal University of Bahia. Institute of Collective Health. Salvador, BA, Brazil / Fundação Oswaldo Cruz. instituto Gonçalo Moniz. Salvador, BA, Brasil.Fundação Oswaldo Cruz. instituto Gonçalo Moniz. Salvador, BA, Brasil / Yale School of Public Health. Department of Epidemiology of Microbial Diseases. New Haven, USA.University of Liverpool. Department of Evolution, Ecology and Behaviour. Liverpool, UK.Lancaster University Medical School. Centre for Health Informatics, Computing, and Statistics. Lancaster, UKFederal University of Bahia. Institute of Collective Health. Salvador, BA, Brazil / Fundação Oswaldo Cruz. instituto Gonçalo Moniz. Salvador, BA, Brasil / Yale School of Public Health. Department of Epidemiology of Microbial Diseases. New Haven, USA.Lancaster University Medical School. Centre for Health Informatics, Computing, and Statistics. Lancaster, UK.A key requirement in studies of endemic vector-borne or zoonotic disease is an estimate of the spatial variation in vector or reservoir host abundance. For many vector species, multiple indices of abundance are available, but current approaches to choosing between or combining these indices do not fully exploit the potential inferential benefits that might accrue from modelling their joint spatial distribution. Here, we develop a class of multivariate generalized linear geostatistical models for multiple indices of abundance. We illustrate this novel methodology with a case study on Norway rats in a low-income urban Brazilian community, where rat abundance is a likely risk factor for human leptospirosis. We combine three indices of rat abundance to draw predictive inferences on a spatially continuous latent process, rattiness, that acts as a proxy for abundance.We show how to explore the association between rattiness and spatially varying environmental factors, evaluate the relative importance of each of the three contributing indices and assess the presence of residual, unexplained spatial variation, and identify rattiness hotspots. The proposed methodology is applicable more generally as a tool for understanding the role of vector or reservoir host abundance in predicting spatial variation in the risk of human disease.engThe Royal Society [SocietyEpidemiologiaZoonosesDoenças transmitidas por vetoresLeptospiroseRatosEpidemiologyAbundance indicesZoonotic and vector-borne diseasesMultivariate modelbased geostatisticsLeptospirosisNorway ratA multivariate geostatistical framework for combining multiple indices of abundance for disease vectors and reservoirs: a case study of rattiness in a low-income urban Brazilian communityinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/44075/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALEyre Max T A multivariate....pdfEyre Max T A multivariate....pdfapplication/pdf1298375https://www.arca.fiocruz.br/bitstream/icict/44075/2/Eyre%20Max%20T%20A%20multivariate....pdf7ebacf5ed5f313cd73ef50bf9b5fcd38MD52TEXTEyre Max T A multivariate....pdf.txtEyre Max T A multivariate....pdf.txtExtracted texttext/plain66645https://www.arca.fiocruz.br/bitstream/icict/44075/3/Eyre%20Max%20T%20A%20multivariate....pdf.txt05fd753478d6e876aaecfd874f9412fbMD53icict/440752023-03-15 14:34:20.369oai:www.arca.fiocruz.br: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ório InstitucionalPUBhttps://www.arca.fiocruz.br/oai/requestrepositorio.arca@fiocruz.bropendoar:21352023-03-15T17:34:20Repositório Institucional da FIOCRUZ (ARCA) - Fundação Oswaldo Cruz (FIOCRUZ)false
dc.title.pt_BR.fl_str_mv A multivariate geostatistical framework for combining multiple indices of abundance for disease vectors and reservoirs: a case study of rattiness in a low-income urban Brazilian community
title A multivariate geostatistical framework for combining multiple indices of abundance for disease vectors and reservoirs: a case study of rattiness in a low-income urban Brazilian community
spellingShingle A multivariate geostatistical framework for combining multiple indices of abundance for disease vectors and reservoirs: a case study of rattiness in a low-income urban Brazilian community
Eyre, Max T.
Epidemiologia
Zoonoses
Doenças transmitidas por vetores
Leptospirose
Ratos
Epidemiology
Abundance indices
Zoonotic and vector-borne diseases
Multivariate modelbased geostatistics
Leptospirosis
Norway rat
title_short A multivariate geostatistical framework for combining multiple indices of abundance for disease vectors and reservoirs: a case study of rattiness in a low-income urban Brazilian community
title_full A multivariate geostatistical framework for combining multiple indices of abundance for disease vectors and reservoirs: a case study of rattiness in a low-income urban Brazilian community
title_fullStr A multivariate geostatistical framework for combining multiple indices of abundance for disease vectors and reservoirs: a case study of rattiness in a low-income urban Brazilian community
title_full_unstemmed A multivariate geostatistical framework for combining multiple indices of abundance for disease vectors and reservoirs: a case study of rattiness in a low-income urban Brazilian community
title_sort A multivariate geostatistical framework for combining multiple indices of abundance for disease vectors and reservoirs: a case study of rattiness in a low-income urban Brazilian community
author Eyre, Max T.
author_facet Eyre, Max T.
Pereira, Ticiana S. A. Carvalho
Souza, Fábio N.
Khalilus, Hsein
Hacker, Kathryn P.
Serrano, Soledad
Taylor, Joshua P.
Reis, Mitermayer Galvão dos
Ko, Albert Icksang
Begon, Mike
Diggle, Peter J
Costa, Federico
Giorgi, Emanuele
author_role author
author2 Pereira, Ticiana S. A. Carvalho
Souza, Fábio N.
Khalilus, Hsein
Hacker, Kathryn P.
Serrano, Soledad
Taylor, Joshua P.
Reis, Mitermayer Galvão dos
Ko, Albert Icksang
Begon, Mike
Diggle, Peter J
Costa, Federico
Giorgi, Emanuele
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Eyre, Max T.
Pereira, Ticiana S. A. Carvalho
Souza, Fábio N.
Khalilus, Hsein
Hacker, Kathryn P.
Serrano, Soledad
Taylor, Joshua P.
Reis, Mitermayer Galvão dos
Ko, Albert Icksang
Begon, Mike
Diggle, Peter J
Costa, Federico
Giorgi, Emanuele
dc.subject.other.pt_BR.fl_str_mv Epidemiologia
Zoonoses
Doenças transmitidas por vetores
Leptospirose
Ratos
topic Epidemiologia
Zoonoses
Doenças transmitidas por vetores
Leptospirose
Ratos
Epidemiology
Abundance indices
Zoonotic and vector-borne diseases
Multivariate modelbased geostatistics
Leptospirosis
Norway rat
dc.subject.en.pt_BR.fl_str_mv Epidemiology
Abundance indices
Zoonotic and vector-borne diseases
Multivariate modelbased geostatistics
Leptospirosis
Norway rat
description Ministério da Ciência, Tecnologia e Inovação, the Conselho Nacional de Desenvolvimento Científico e Tecnológico; the Fundação de Amparo à Pesquisa do Estado da Bahia (grant no. 10206/20155); the Fundação Oswaldo Cruz; Research Councils UK, the Medical Research Council (grant nos. 1964635, MR/P024084/1 and MR/T029781/1); the Ministério da Saúde; the U.S. Department of Health and Human Services, the National Institutes of Health, the National Institute of Allergy and Infectious Diseases (grant nos. F31 AI114245, R01 AI052473, R01 TW009504, R25 TW009338 and U01 AI088752); the Secretaria Municipal de Saúde de Salvador-BA; and the Wellcome Trust (grant nos. 102330/Z/13/Z and 218987/Z/19/Z). MTE is in receipt of a studentship from the Medical Research Council, United Kingdom.
publishDate 2020
dc.date.accessioned.fl_str_mv 2020-10-20T11:58:43Z
dc.date.available.fl_str_mv 2020-10-20T11:58:43Z
dc.date.issued.fl_str_mv 2020
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv EYRE, Max T. et al. A multivariate geostatistical framework for combining multiple indices of abundance for disease vectors and reservoirs: a case study of rattiness in a low-income urban Brazilian community. Journal of the Royal Society, Interface, 2020.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/44075
dc.identifier.issn.pt_BR.fl_str_mv 1742-5689
dc.identifier.doi.none.fl_str_mv 10.1098/rsif.2020.0398
identifier_str_mv EYRE, Max T. et al. A multivariate geostatistical framework for combining multiple indices of abundance for disease vectors and reservoirs: a case study of rattiness in a low-income urban Brazilian community. Journal of the Royal Society, Interface, 2020.
1742-5689
10.1098/rsif.2020.0398
url https://www.arca.fiocruz.br/handle/icict/44075
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv The Royal Society [Society
publisher.none.fl_str_mv The Royal Society [Society
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
instacron:FIOCRUZ
instname_str Fundação Oswaldo Cruz (FIOCRUZ)
instacron_str FIOCRUZ
institution FIOCRUZ
reponame_str Repositório Institucional da FIOCRUZ (ARCA)
collection Repositório Institucional da FIOCRUZ (ARCA)
bitstream.url.fl_str_mv https://www.arca.fiocruz.br/bitstream/icict/44075/1/license.txt
https://www.arca.fiocruz.br/bitstream/icict/44075/2/Eyre%20Max%20T%20A%20multivariate....pdf
https://www.arca.fiocruz.br/bitstream/icict/44075/3/Eyre%20Max%20T%20A%20multivariate....pdf.txt
bitstream.checksum.fl_str_mv 5a560609d32a3863062d77ff32785d58
7ebacf5ed5f313cd73ef50bf9b5fcd38
05fd753478d6e876aaecfd874f9412fb
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
repository.name.fl_str_mv Repositório Institucional da FIOCRUZ (ARCA) - Fundação Oswaldo Cruz (FIOCRUZ)
repository.mail.fl_str_mv repositorio.arca@fiocruz.br
_version_ 1798324940753076224