Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America

Detalhes bibliográficos
Autor(a) principal: Carneiro, Paulo Alex
Data de Publicação: 2021
Outros Autores: Zimpel, Cristina Kraemer, Pasquatti, Taynara Nunes, Pereira, Taiana T. Silva, Takatani, Haruo, Silva, Christian B. D. G., Abramovitch, Robert B., Guimarães, Ana Marcia Sa, Dávila, Alberto M. R., Araujo, Flabio R., Kaneene, John B.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/48405
Resumo: Center for Comparative Epidemiology, College of Veterinary Medicine, Michigan State University. East Lansing, MI, USA / Instituto Federal do Estado do Amazonas. Manaus, Am, Brasil.
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spelling Carneiro, Paulo AlexZimpel, Cristina KraemerPasquatti, Taynara NunesPereira, Taiana T. SilvaTakatani, HaruoSilva, Christian B. D. G.Abramovitch, Robert B.Guimarães, Ana Marcia SaDávila, Alberto M. R.Araujo, Flabio R.Kaneene, John B.2021-07-29T14:27:52Z2021-07-29T14:27:52Z2021CARNEIRO, Paulo Alex et al. Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America. Front. Vet. Sci., v. 8, Article 630989, 13 p, Feb. 2021.2299-1769https://www.arca.fiocruz.br/handle/icict/4840510.3389/fvets.2021.630989engFrontiers MediaMycobacterium bovisTuberculoseTransmissão de TB bovinaComplexo clonalTuberculose bovinaTuberculosisBovine TB transmissionClonal complexWhole genome sequencingSpoligotypeMycobacterium bovisBovine tuberculosisGenetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South Americainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleCenter for Comparative Epidemiology, College of Veterinary Medicine, Michigan State University. East Lansing, MI, USA / Instituto Federal do Estado do Amazonas. Manaus, Am, Brasil.Universidade de São Paulo. Instituto de Ciências Biomédicas. Departamento de Microbiologia. Laboratório de Pesquisa Aplicada em Micobactérias. São Paulo, SP, Brasil / Department of Microbiology and Molecular Genetics, Michigan State University. East Lansing, MI, USA.Universidade Católica Dom Bosco. Campo Grande, MS, Brasil.Universidade de São Paulo. Instituto de Ciências Biomédicas. Departamento de Microbiologia. Laboratório de Pesquisa Aplicada em Micobactérias. São Paulo, SP, Brasil.Agência de Defesa Agropecuaria do Amazonas. Manaus, AM, Brasil.Agência de Defesa Agropecuaria do Amazonas. Manaus, AM, Brasil.Department of Microbiology and Molecular Genetics, Michigan State University. East Lansing, MI, USA.Universidade de São Paulo. Instituto de Ciências Biomédicas. Departamento de Microbiologia. Laboratório de Pesquisa Aplicada em Micobactérias. São Paulo, SP, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Biologia Computacional e de Sistemas. Rio de Janeiro, RJ, Brasil / Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Programa de Pós-Graduação em Biodiversidade e Saúde. Rio de Janeiro, RJ, Brasil.Embrapa Gado de Corte. Campo Grande, MS, Brasil.Center for Comparative Epidemiology, College of Veterinary Medicine, Michigan State University. East Lansing, MI, USABovine tuberculosis (bTB) has yet to be eradicated in Brazil. Herds of cattle and buffalo are important sources of revenue to people living in the banks of the Amazon River basin. A better understanding of Mycobacterium bovis (M. bovis) populational structure and transmission dynamics affecting these animals can significantly contribute in efforts to improve their sanitary status. Herein, we sequenced the whole genome of 22 M. bovis isolates (15 from buffalo and 7 from cattle) from 10 municipalities in the region of the Lower Amazon River Basin in Brazil and performed phylogenomic analysis and Single Nucleotide Polymorphism (SNP)-based transmission inference to evaluate population structure and transmission networks. Additionally, we compared these genomes to others obtained in unrelated studies in the Marajó Island (n = 15) and worldwide (n = 128) to understand strain diversity in the Amazon and to infer M. bovis lineages. Our results show a higher genomic diversity of M. bovis genomes obtained in the Lower Amazon River region when compared to the Marajó Island, while no significant difference was observed between M. bovis genomes obtained from cattle and buffalo (p ≥ 0.05). This high genetic diversity is reflected by the weak phylogenetic clustering of M. bovis from the Lower Amazon River region based on geographic proximity and in the detection of only two putative transmission clusters in the region. One of these clusters is the first description of inter-species transmission between cattle and buffalo in the Amazon, bringing implications to the bTB control program. Surprisingly, two M. bovis lineages were detected in our dataset, namely Lb1 and Lb3, constituting the first description of Lb1 in South America. Bovine tuberculosis (bTB) has yet to be eradicated in Brazil. Herds of cattle and buffalo are important sources of revenue to people living in the banks of the Amazon River basin. A better understanding of Mycobacterium bovis (M. bovis) populational structure and transmission dynamics affecting these animals can significantly contribute in efforts to improve their sanitary status. Herein, we sequenced the whole genome of 22 M. bovis isolates (15 from buffalo and 7 from cattle) from 10 municipalities in the region of the Lower Amazon River Basin in Brazil and performed phylogenomic analysis and Single Nucleotide Polymorphism (SNP)-based transmission inference to evaluate population structure and transmission networks. Additionally, we compared these genomes to others obtained in unrelated studies in the Marajó Island (n = 15) and worldwide (n = 128) to understand strain diversity in the Amazon and to infer M. bovis lineages. Our results show a higher genomic diversity of M. bovis genomes obtained in the Lower Amazon River region when compared to the Marajó Island, while no significant difference was observed between M. bovis genomes obtained from cattle and buffalo (p ≥ 0.05). This high genetic diversity is reflected by the weak phylogenetic clustering of M. bovis from the Lower Amazon River region based on geographic proximity and in the detection of only two putative transmission clusters in the region. One of these clusters is the first description of inter-species transmission between cattle and buffalo in the Amazon, bringing implications to the bTB control program. Surprisingly, two M. bovis lineages were detected in our dataset, namely Lb1 and Lb3, constituting the first description of Lb1 in South America. Most of the strains of this study (13/22) and all 15 strains of the Marajó Island carried no clonal complex marker, suggesting that the recent lineage classification better describe the diversity of M. bovis in the Amazon.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/48405/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALAlberto_DAvila_etal_IOC_2021.pdfAlberto_DAvila_etal_IOC_2021.pdfapplication/pdf4108975https://www.arca.fiocruz.br/bitstream/icict/48405/2/Alberto_DAvila_etal_IOC_2021.pdf3f8018deaa7511eb682e45f98a65c020MD52TEXTAlberto_DAvila_etal_IOC_2021.pdf.txtAlberto_DAvila_etal_IOC_2021.pdf.txtExtracted texttext/plain53669https://www.arca.fiocruz.br/bitstream/icict/48405/3/Alberto_DAvila_etal_IOC_2021.pdf.txt35caaa0f16cfddbe028b4dcc4286eddeMD53icict/484052022-06-24 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dc.title.pt_BR.fl_str_mv Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America
title Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America
spellingShingle Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America
Carneiro, Paulo Alex
Mycobacterium bovis
Tuberculose
Transmissão de TB bovina
Complexo clonal
Tuberculose bovina
Tuberculosis
Bovine TB transmission
Clonal complex
Whole genome sequencing
Spoligotype
Mycobacterium bovis
Bovine tuberculosis
title_short Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America
title_full Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America
title_fullStr Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America
title_full_unstemmed Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America
title_sort Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America
author Carneiro, Paulo Alex
author_facet Carneiro, Paulo Alex
Zimpel, Cristina Kraemer
Pasquatti, Taynara Nunes
Pereira, Taiana T. Silva
Takatani, Haruo
Silva, Christian B. D. G.
Abramovitch, Robert B.
Guimarães, Ana Marcia Sa
Dávila, Alberto M. R.
Araujo, Flabio R.
Kaneene, John B.
author_role author
author2 Zimpel, Cristina Kraemer
Pasquatti, Taynara Nunes
Pereira, Taiana T. Silva
Takatani, Haruo
Silva, Christian B. D. G.
Abramovitch, Robert B.
Guimarães, Ana Marcia Sa
Dávila, Alberto M. R.
Araujo, Flabio R.
Kaneene, John B.
author2_role author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Carneiro, Paulo Alex
Zimpel, Cristina Kraemer
Pasquatti, Taynara Nunes
Pereira, Taiana T. Silva
Takatani, Haruo
Silva, Christian B. D. G.
Abramovitch, Robert B.
Guimarães, Ana Marcia Sa
Dávila, Alberto M. R.
Araujo, Flabio R.
Kaneene, John B.
dc.subject.other.pt_BR.fl_str_mv Mycobacterium bovis
Tuberculose
Transmissão de TB bovina
Complexo clonal
Tuberculose bovina
topic Mycobacterium bovis
Tuberculose
Transmissão de TB bovina
Complexo clonal
Tuberculose bovina
Tuberculosis
Bovine TB transmission
Clonal complex
Whole genome sequencing
Spoligotype
Mycobacterium bovis
Bovine tuberculosis
dc.subject.en.pt_BR.fl_str_mv Tuberculosis
Bovine TB transmission
Clonal complex
Whole genome sequencing
Spoligotype
Mycobacterium bovis
Bovine tuberculosis
description Center for Comparative Epidemiology, College of Veterinary Medicine, Michigan State University. East Lansing, MI, USA / Instituto Federal do Estado do Amazonas. Manaus, Am, Brasil.
publishDate 2021
dc.date.accessioned.fl_str_mv 2021-07-29T14:27:52Z
dc.date.available.fl_str_mv 2021-07-29T14:27:52Z
dc.date.issued.fl_str_mv 2021
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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status_str publishedVersion
dc.identifier.citation.fl_str_mv CARNEIRO, Paulo Alex et al. Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America. Front. Vet. Sci., v. 8, Article 630989, 13 p, Feb. 2021.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/48405
dc.identifier.issn.pt_BR.fl_str_mv 2299-1769
dc.identifier.doi.none.fl_str_mv 10.3389/fvets.2021.630989
identifier_str_mv CARNEIRO, Paulo Alex et al. Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America. Front. Vet. Sci., v. 8, Article 630989, 13 p, Feb. 2021.
2299-1769
10.3389/fvets.2021.630989
url https://www.arca.fiocruz.br/handle/icict/48405
dc.language.iso.fl_str_mv eng
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dc.publisher.none.fl_str_mv Frontiers Media
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