Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Outros Autores: | , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da FIOCRUZ (ARCA) |
Texto Completo: | https://www.arca.fiocruz.br/handle/icict/48405 |
Resumo: | Center for Comparative Epidemiology, College of Veterinary Medicine, Michigan State University. East Lansing, MI, USA / Instituto Federal do Estado do Amazonas. Manaus, Am, Brasil. |
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Carneiro, Paulo AlexZimpel, Cristina KraemerPasquatti, Taynara NunesPereira, Taiana T. SilvaTakatani, HaruoSilva, Christian B. D. G.Abramovitch, Robert B.Guimarães, Ana Marcia SaDávila, Alberto M. R.Araujo, Flabio R.Kaneene, John B.2021-07-29T14:27:52Z2021-07-29T14:27:52Z2021CARNEIRO, Paulo Alex et al. Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America. Front. Vet. Sci., v. 8, Article 630989, 13 p, Feb. 2021.2299-1769https://www.arca.fiocruz.br/handle/icict/4840510.3389/fvets.2021.630989engFrontiers MediaMycobacterium bovisTuberculoseTransmissão de TB bovinaComplexo clonalTuberculose bovinaTuberculosisBovine TB transmissionClonal complexWhole genome sequencingSpoligotypeMycobacterium bovisBovine tuberculosisGenetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South Americainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleCenter for Comparative Epidemiology, College of Veterinary Medicine, Michigan State University. East Lansing, MI, USA / Instituto Federal do Estado do Amazonas. Manaus, Am, Brasil.Universidade de São Paulo. Instituto de Ciências Biomédicas. Departamento de Microbiologia. Laboratório de Pesquisa Aplicada em Micobactérias. São Paulo, SP, Brasil / Department of Microbiology and Molecular Genetics, Michigan State University. East Lansing, MI, USA.Universidade Católica Dom Bosco. Campo Grande, MS, Brasil.Universidade de São Paulo. Instituto de Ciências Biomédicas. Departamento de Microbiologia. Laboratório de Pesquisa Aplicada em Micobactérias. São Paulo, SP, Brasil.Agência de Defesa Agropecuaria do Amazonas. Manaus, AM, Brasil.Agência de Defesa Agropecuaria do Amazonas. Manaus, AM, Brasil.Department of Microbiology and Molecular Genetics, Michigan State University. East Lansing, MI, USA.Universidade de São Paulo. Instituto de Ciências Biomédicas. Departamento de Microbiologia. Laboratório de Pesquisa Aplicada em Micobactérias. São Paulo, SP, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Biologia Computacional e de Sistemas. Rio de Janeiro, RJ, Brasil / Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Programa de Pós-Graduação em Biodiversidade e Saúde. Rio de Janeiro, RJ, Brasil.Embrapa Gado de Corte. Campo Grande, MS, Brasil.Center for Comparative Epidemiology, College of Veterinary Medicine, Michigan State University. East Lansing, MI, USABovine tuberculosis (bTB) has yet to be eradicated in Brazil. Herds of cattle and buffalo are important sources of revenue to people living in the banks of the Amazon River basin. A better understanding of Mycobacterium bovis (M. bovis) populational structure and transmission dynamics affecting these animals can significantly contribute in efforts to improve their sanitary status. Herein, we sequenced the whole genome of 22 M. bovis isolates (15 from buffalo and 7 from cattle) from 10 municipalities in the region of the Lower Amazon River Basin in Brazil and performed phylogenomic analysis and Single Nucleotide Polymorphism (SNP)-based transmission inference to evaluate population structure and transmission networks. Additionally, we compared these genomes to others obtained in unrelated studies in the Marajó Island (n = 15) and worldwide (n = 128) to understand strain diversity in the Amazon and to infer M. bovis lineages. Our results show a higher genomic diversity of M. bovis genomes obtained in the Lower Amazon River region when compared to the Marajó Island, while no significant difference was observed between M. bovis genomes obtained from cattle and buffalo (p ≥ 0.05). This high genetic diversity is reflected by the weak phylogenetic clustering of M. bovis from the Lower Amazon River region based on geographic proximity and in the detection of only two putative transmission clusters in the region. One of these clusters is the first description of inter-species transmission between cattle and buffalo in the Amazon, bringing implications to the bTB control program. Surprisingly, two M. bovis lineages were detected in our dataset, namely Lb1 and Lb3, constituting the first description of Lb1 in South America. Bovine tuberculosis (bTB) has yet to be eradicated in Brazil. Herds of cattle and buffalo are important sources of revenue to people living in the banks of the Amazon River basin. A better understanding of Mycobacterium bovis (M. bovis) populational structure and transmission dynamics affecting these animals can significantly contribute in efforts to improve their sanitary status. Herein, we sequenced the whole genome of 22 M. bovis isolates (15 from buffalo and 7 from cattle) from 10 municipalities in the region of the Lower Amazon River Basin in Brazil and performed phylogenomic analysis and Single Nucleotide Polymorphism (SNP)-based transmission inference to evaluate population structure and transmission networks. Additionally, we compared these genomes to others obtained in unrelated studies in the Marajó Island (n = 15) and worldwide (n = 128) to understand strain diversity in the Amazon and to infer M. bovis lineages. Our results show a higher genomic diversity of M. bovis genomes obtained in the Lower Amazon River region when compared to the Marajó Island, while no significant difference was observed between M. bovis genomes obtained from cattle and buffalo (p ≥ 0.05). This high genetic diversity is reflected by the weak phylogenetic clustering of M. bovis from the Lower Amazon River region based on geographic proximity and in the detection of only two putative transmission clusters in the region. One of these clusters is the first description of inter-species transmission between cattle and buffalo in the Amazon, bringing implications to the bTB control program. Surprisingly, two M. bovis lineages were detected in our dataset, namely Lb1 and Lb3, constituting the first description of Lb1 in South America. Most of the strains of this study (13/22) and all 15 strains of the Marajó Island carried no clonal complex marker, suggesting that the recent lineage classification better describe the diversity of M. bovis in the Amazon.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/48405/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALAlberto_DAvila_etal_IOC_2021.pdfAlberto_DAvila_etal_IOC_2021.pdfapplication/pdf4108975https://www.arca.fiocruz.br/bitstream/icict/48405/2/Alberto_DAvila_etal_IOC_2021.pdf3f8018deaa7511eb682e45f98a65c020MD52TEXTAlberto_DAvila_etal_IOC_2021.pdf.txtAlberto_DAvila_etal_IOC_2021.pdf.txtExtracted texttext/plain53669https://www.arca.fiocruz.br/bitstream/icict/48405/3/Alberto_DAvila_etal_IOC_2021.pdf.txt35caaa0f16cfddbe028b4dcc4286eddeMD53icict/484052022-06-24 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dc.title.pt_BR.fl_str_mv |
Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America |
title |
Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America |
spellingShingle |
Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America Carneiro, Paulo Alex Mycobacterium bovis Tuberculose Transmissão de TB bovina Complexo clonal Tuberculose bovina Tuberculosis Bovine TB transmission Clonal complex Whole genome sequencing Spoligotype Mycobacterium bovis Bovine tuberculosis |
title_short |
Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America |
title_full |
Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America |
title_fullStr |
Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America |
title_full_unstemmed |
Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America |
title_sort |
Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America |
author |
Carneiro, Paulo Alex |
author_facet |
Carneiro, Paulo Alex Zimpel, Cristina Kraemer Pasquatti, Taynara Nunes Pereira, Taiana T. Silva Takatani, Haruo Silva, Christian B. D. G. Abramovitch, Robert B. Guimarães, Ana Marcia Sa Dávila, Alberto M. R. Araujo, Flabio R. Kaneene, John B. |
author_role |
author |
author2 |
Zimpel, Cristina Kraemer Pasquatti, Taynara Nunes Pereira, Taiana T. Silva Takatani, Haruo Silva, Christian B. D. G. Abramovitch, Robert B. Guimarães, Ana Marcia Sa Dávila, Alberto M. R. Araujo, Flabio R. Kaneene, John B. |
author2_role |
author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Carneiro, Paulo Alex Zimpel, Cristina Kraemer Pasquatti, Taynara Nunes Pereira, Taiana T. Silva Takatani, Haruo Silva, Christian B. D. G. Abramovitch, Robert B. Guimarães, Ana Marcia Sa Dávila, Alberto M. R. Araujo, Flabio R. Kaneene, John B. |
dc.subject.other.pt_BR.fl_str_mv |
Mycobacterium bovis Tuberculose Transmissão de TB bovina Complexo clonal Tuberculose bovina |
topic |
Mycobacterium bovis Tuberculose Transmissão de TB bovina Complexo clonal Tuberculose bovina Tuberculosis Bovine TB transmission Clonal complex Whole genome sequencing Spoligotype Mycobacterium bovis Bovine tuberculosis |
dc.subject.en.pt_BR.fl_str_mv |
Tuberculosis Bovine TB transmission Clonal complex Whole genome sequencing Spoligotype Mycobacterium bovis Bovine tuberculosis |
description |
Center for Comparative Epidemiology, College of Veterinary Medicine, Michigan State University. East Lansing, MI, USA / Instituto Federal do Estado do Amazonas. Manaus, Am, Brasil. |
publishDate |
2021 |
dc.date.accessioned.fl_str_mv |
2021-07-29T14:27:52Z |
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2021-07-29T14:27:52Z |
dc.date.issued.fl_str_mv |
2021 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/article |
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article |
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dc.identifier.citation.fl_str_mv |
CARNEIRO, Paulo Alex et al. Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America. Front. Vet. Sci., v. 8, Article 630989, 13 p, Feb. 2021. |
dc.identifier.uri.fl_str_mv |
https://www.arca.fiocruz.br/handle/icict/48405 |
dc.identifier.issn.pt_BR.fl_str_mv |
2299-1769 |
dc.identifier.doi.none.fl_str_mv |
10.3389/fvets.2021.630989 |
identifier_str_mv |
CARNEIRO, Paulo Alex et al. Genetic Diversity and Potential Paths of Transmission of Mycobacterium bovis in the Amazon: The Discovery of M. bovis Lineage Lb1 Circulating in South America. Front. Vet. Sci., v. 8, Article 630989, 13 p, Feb. 2021. 2299-1769 10.3389/fvets.2021.630989 |
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https://www.arca.fiocruz.br/handle/icict/48405 |
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eng |
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eng |
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Frontiers Media |
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Frontiers Media |
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