Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection

Souza, Thiago Moreno L.; Vieira, Yasmine Rangel; Delatorre, Edson; Barbosa-Lima, Giselle; Luiz, Raul Leal Faria; Vizzoni, Alexandre; Jain, Komal; Miranda, Milene Mesquita; Bhuva, Nishit; Gogarten, Jan F.; Ng, James; Thakkar, Riddhi; Calheiros, Andrea Surrage; Monteiro, Ana Paula Teixeira; Bozza, Patrícia Torres; Bozza, Fernando A.; Tschoeke, Diogo A.; Leomil, Luciana; Mendonça, Marcos Cesar Lima de; Rodrigues, Cintia Damasceno dos Santos; Torres, Maria C.; Filippis, Ana Maria Bispo de; Nogueira, Rita Maria Ribeiro; Thompson, Fabiano L.; Lemos, Cristina; Durovni, Betina; Cerbino Neto, José; Morel, Carlos Medicis; Lipkin, W. Ian; Mishra, Nischay

Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection

Detalhes bibliográficos
Autor(a) principal:	Souza, Thiago Moreno L.
Data de Publicação:	2019
Outros Autores:	Vieira, Yasmine Rangel, Delatorre, Edson, Barbosa-Lima, Giselle, Luiz, Raul Leal Faria, Vizzoni, Alexandre, Jain, Komal, Miranda, Milene Mesquita, Bhuva, Nishit, Gogarten, Jan F., Ng, James, Thakkar, Riddhi, Calheiros, Andrea Surrage, Monteiro, Ana Paula Teixeira, Bozza, Patrícia Torres, Bozza, Fernando A., Tschoeke, Diogo A., Leomil, Luciana, Mendonça, Marcos Cesar Lima de, Rodrigues, Cintia Damasceno dos Santos, Torres, Maria C., Filippis, Ana Maria Bispo de, Nogueira, Rita Maria Ribeiro, Thompson, Fabiano L., Lemos, Cristina, Durovni, Betina, Cerbino Neto, José, Morel, Carlos Medicis, Lipkin, W. Ian, Mishra, Nischay
Tipo de documento:	Artigo
Idioma:	eng
Título da fonte:	Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo:	https://www.arca.fiocruz.br/handle/icict/32072
Resumo:	Fundação Oswaldo Cruz. Instituto Nacional de Infectologia Evandro Chagas - Thiago Moreno L. Souza; Yasmine Rangel Vieira; Giselle Barbosa Lima, Raul Leal Faria Luiz; Alexandre Vizzon; Fernando A. Bozza; José Cerbino-Neto. Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Edson Delatorre. Fundação Oswaldo Cruz. Centro de Desenvolvimento Tecnológico em Saúde. Thiago Moreno L. Souza; Carlos M. Morel.

Metadados do item

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network_name_str	Repositório Institucional da FIOCRUZ (ARCA)
repository_id_str	2135
spelling	Souza, Thiago Moreno L.Vieira, Yasmine RangelDelatorre, EdsonBarbosa-Lima, GiselleLuiz, Raul Leal FariaVizzoni, AlexandreJain, KomalMiranda, Milene MesquitaBhuva, NishitGogarten, Jan F.Ng, JamesThakkar, RiddhiCalheiros, Andrea SurrageMonteiro, Ana Paula TeixeiraBozza, Patrícia TorresBozza, Fernando A.Tschoeke, Diogo A.Leomil, LucianaMendonça, Marcos Cesar Lima deRodrigues, Cintia Damasceno dos SantosTorres, Maria C.Filippis, Ana Maria Bispo deNogueira, Rita Maria RibeiroThompson, Fabiano L.Lemos, CristinaDurovni, BetinaCerbino Neto, JoséMorel, Carlos MedicisLipkin, W. IanMishra, Nischay2019-03-14T12:28:25Z2019-03-14T12:28:25Z2019SOUZA, Thiago Moreno L. et al. Emergence of the East-CentralSouth-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection. Scientific Reports, v. 9, n. 2760, p. 1-7, 2019.2045-2322https://www.arca.fiocruz.br/handle/icict/3207210.1038/s41598-019-39406-92045-2322Fundação Oswaldo Cruz. Instituto Nacional de Infectologia Evandro Chagas - Thiago Moreno L. Souza; Yasmine Rangel Vieira; Giselle Barbosa Lima, Raul Leal Faria Luiz; Alexandre Vizzon; Fernando A. Bozza; José Cerbino-Neto. Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Edson Delatorre. Fundação Oswaldo Cruz. Centro de Desenvolvimento Tecnológico em Saúde. Thiago Moreno L. Souza; Carlos M. Morel.Thiago Moreno L. Souza1,5,11, Yasmine RangelVieira1, Edson Delatorre 3, Giselle BarbosaLima1, Raul Leal Faria Luiz1, AlexandreVizzoni 1, Komal Jain2, Milene Mesquita Miranda4, Nishit Bhuva2, Jan Gogarten2,12,13, James Ng2, RiddhiThakkar2, Andrea SurrageCalheiros5, Ana PaulaTeixeira Monteiro5, PatríciaT. Bozza5, FernandoA. Bozza1,6, DiogoA.Tschoeke7, Luciana Leomil7, MarcosCesar Lima de Mendonça8, Cintia Damasceno dos Santos Rodrigues8, MariaC.Torres8, Ana Maria Bispo de Filippis8, Rita Maria Ribeiro Nogueira8, Fabiano L.Thompson7,9, Cristina Lemos10, Betina Durovni10, José Cerbino-Neto1, Carlos M. Morel 11, W. Ian Lipkin 2 & Nischay Mishra 2 1 Instituto Nacional de Infectologia (INI), Fundação Oswaldo Cruz (Fiocruz), Rio de Janeiro, Rio de Janeiro, RJ, Brazil. 2 Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, USA. 3 Laboratório de AIDS e imunologia Molecular, Instituto Oswaldo Cruz (IOC), Fiocruz, Rio de Janeiro, Rio de Janeiro, RJ, Brazil. 4 Laboratório de Vírus Respiratório e do Sarampo, IOC, Fiocruz, Rio de Janeiro, Rio de Janeiro, RJ, Brazil. 5 Laboratório de Imunofarmacologia, IOC, Fiocruz, Rio de Janeiro, Rio de Janeiro, RJ, Brazil. 6 D’Or Institute for Research and Education (IDOR), Rio de Janeiro, Rio de Janeiro, RJ, Brazil. 7 Instituto de Biologia, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Rio de Janeiro, RJ, Brazil. 8 Laboratório de Flavivírus, IOC, Fiocruz, Rio de Janeiro, Rio de Janeiro, RJ, Brazil. 9 SAGE/COPPE, UFRJ, Rio de Janeiro, Rio de Janeiro, RJ, Brazil. 10Secretaria Municipal de Saúde, Rio de Janeiro, Rio de Janeiro, Brazil. 11National Institute for Science and Technology on Innovation on Diseases of Neglected Populations (INCT/IDPN), Center for Technological Development in Health (CDTS), Fiocruz, Rio de Janeiro, Rio de Janeiro, RJ, Brazil. 12Epidemiology of Highly Pathogenic Microorganisms, Robert Koch Institute, Berlin, Germany. 13Institute of Microbiology and Epizootics, Freie Universität Berlin, Berlin, Germany.Múltipla - Ver em Notas.Brazil, which is hyperendemic for dengue virus (DENV), has had recent Zika (ZIKV) and (CHIKV) Chikungunya virus outbreaks. Since March 2016, CHIKV is the arbovirus infection most frequently diagnosed in Rio de Janeiro. In the analysis of 1835 syndromic patients, screened by real time RT-PCR, 56.4% of the cases were attributed to CHIKV, 29.6% to ZIKV, and 14.1% to DENV-4. Sequence analyses of CHIKV from sixteen samples revealed that the East-Central-South-African (ECSA) genotype of CHIKV has been circulating in Brazil since 2013 [95% bayesian credible interval (BCI): 03/2012-10/2013], almost a year before it was detected by arbovirus surveillance program. Brazilian cases are related to Central African Republic sequences from 1980’s. To the best of our knowledge, given the available sequence published here and elsewhere, the ECSA genotype was likely introduced to Rio de Janeiro early on 2014 (02/2014; BCI: 07/2013-08/2014) through a single event, after primary circulation in the Bahia state at the Northestern Brazil in the previous year. The observation that the ECSA genotype of CHIKV was circulating undetected underscores the need for improvements in molecular methods for viral surveillance.engNature ResearchEmergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detectioninfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleChikungunyaZikaBrazilVirusinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; 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dc.title.pt_BR.fl_str_mv	Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection
title	Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection
spellingShingle	Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection Souza, Thiago Moreno L. Chikungunya Zika Brazil Virus
title_short	Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection
title_full	Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection
title_fullStr	Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection
title_full_unstemmed	Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection
title_sort	Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection
author	Souza, Thiago Moreno L.
author_facet	Souza, Thiago Moreno L. Vieira, Yasmine Rangel Delatorre, Edson Barbosa-Lima, Giselle Luiz, Raul Leal Faria Vizzoni, Alexandre Jain, Komal Miranda, Milene Mesquita Bhuva, Nishit Gogarten, Jan F. Ng, James Thakkar, Riddhi Calheiros, Andrea Surrage Monteiro, Ana Paula Teixeira Bozza, Patrícia Torres Bozza, Fernando A. Tschoeke, Diogo A. Leomil, Luciana Mendonça, Marcos Cesar Lima de Rodrigues, Cintia Damasceno dos Santos Torres, Maria C. Filippis, Ana Maria Bispo de Nogueira, Rita Maria Ribeiro Thompson, Fabiano L. Lemos, Cristina Durovni, Betina Cerbino Neto, José Morel, Carlos Medicis Lipkin, W. Ian Mishra, Nischay
author_role	author
author2	Vieira, Yasmine Rangel Delatorre, Edson Barbosa-Lima, Giselle Luiz, Raul Leal Faria Vizzoni, Alexandre Jain, Komal Miranda, Milene Mesquita Bhuva, Nishit Gogarten, Jan F. Ng, James Thakkar, Riddhi Calheiros, Andrea Surrage Monteiro, Ana Paula Teixeira Bozza, Patrícia Torres Bozza, Fernando A. Tschoeke, Diogo A. Leomil, Luciana Mendonça, Marcos Cesar Lima de Rodrigues, Cintia Damasceno dos Santos Torres, Maria C. Filippis, Ana Maria Bispo de Nogueira, Rita Maria Ribeiro Thompson, Fabiano L. Lemos, Cristina Durovni, Betina Cerbino Neto, José Morel, Carlos Medicis Lipkin, W. Ian Mishra, Nischay
author2_role	author author author author author author author author author author author author author author author author author author author author author author author author author author author author author
dc.contributor.author.fl_str_mv	Souza, Thiago Moreno L. Vieira, Yasmine Rangel Delatorre, Edson Barbosa-Lima, Giselle Luiz, Raul Leal Faria Vizzoni, Alexandre Jain, Komal Miranda, Milene Mesquita Bhuva, Nishit Gogarten, Jan F. Ng, James Thakkar, Riddhi Calheiros, Andrea Surrage Monteiro, Ana Paula Teixeira Bozza, Patrícia Torres Bozza, Fernando A. Tschoeke, Diogo A. Leomil, Luciana Mendonça, Marcos Cesar Lima de Rodrigues, Cintia Damasceno dos Santos Torres, Maria C. Filippis, Ana Maria Bispo de Nogueira, Rita Maria Ribeiro Thompson, Fabiano L. Lemos, Cristina Durovni, Betina Cerbino Neto, José Morel, Carlos Medicis Lipkin, W. Ian Mishra, Nischay
dc.subject.en.pt_BR.fl_str_mv	Chikungunya Zika Brazil Virus
topic	Chikungunya Zika Brazil Virus
description	Fundação Oswaldo Cruz. Instituto Nacional de Infectologia Evandro Chagas - Thiago Moreno L. Souza; Yasmine Rangel Vieira; Giselle Barbosa Lima, Raul Leal Faria Luiz; Alexandre Vizzon; Fernando A. Bozza; José Cerbino-Neto. Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Edson Delatorre. Fundação Oswaldo Cruz. Centro de Desenvolvimento Tecnológico em Saúde. Thiago Moreno L. Souza; Carlos M. Morel.
publishDate	2019
dc.date.accessioned.fl_str_mv	2019-03-14T12:28:25Z
dc.date.available.fl_str_mv	2019-03-14T12:28:25Z
dc.date.issued.fl_str_mv	2019
dc.type.status.fl_str_mv	info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv	info:eu-repo/semantics/article
format	article
status_str	publishedVersion
dc.identifier.citation.fl_str_mv	SOUZA, Thiago Moreno L. et al. Emergence of the East-CentralSouth-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection. Scientific Reports, v. 9, n. 2760, p. 1-7, 2019.
dc.identifier.uri.fl_str_mv	https://www.arca.fiocruz.br/handle/icict/32072
dc.identifier.issn.pt_BR.fl_str_mv	2045-2322
dc.identifier.doi.none.fl_str_mv	10.1038/s41598-019-39406-9
dc.identifier.eissn.none.fl_str_mv	2045-2322
identifier_str_mv	SOUZA, Thiago Moreno L. et al. Emergence of the East-CentralSouth-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection. Scientific Reports, v. 9, n. 2760, p. 1-7, 2019. 2045-2322 10.1038/s41598-019-39406-9
url	https://www.arca.fiocruz.br/handle/icict/32072
dc.language.iso.fl_str_mv	eng
language	eng
dc.rights.driver.fl_str_mv	info:eu-repo/semantics/openAccess
eu_rights_str_mv	openAccess
dc.publisher.none.fl_str_mv	Nature Research
publisher.none.fl_str_mv	Nature Research
dc.source.none.fl_str_mv	reponame:Repositório Institucional da FIOCRUZ (ARCA) instname:Fundação Oswaldo Cruz (FIOCRUZ) instacron:FIOCRUZ
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institution	FIOCRUZ
reponame_str	Repositório Institucional da FIOCRUZ (ARCA)
collection	Repositório Institucional da FIOCRUZ (ARCA)
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repository.mail.fl_str_mv	repositorio.arca@fiocruz.br
_version_	1813008845585252352

Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection

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