SARS‑CoV‑2 surveillance‑based on municipal solid waste leachate in Brazil
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2023 |
| Outros Autores: | , , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Repositório Institucional da FIOCRUZ (ARCA) |
| Texto Completo: | https://www.arca.fiocruz.br/handle/icict/58220 |
Resumo: | Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ, Brasil. |
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Lanzarini, Natália MariaMannarino, Camille FerreiraRibeiro, André Vinicius CostaPrado, TatianaVahia, Leonardo SaboiaSiqueira, Marilda MendonçaResende, Paola CristinaQuintaes, Bianca RamalhoMiagostovich, Marize Pereira2023-05-09T11:55:51Z2023-05-09T11:55:51Z2023LANZARINI, Natália Maria et al. SARS‑CoV‑2 surveillance‑based on municipal solid waste leachate in Brazil. Environmental Science and Pollution Research. p. 1 - 10, April 2023.1614-7499https://www.arca.fiocruz.br/handle/icict/5822010.1007/s11356-023-27019-9engSpringerSARS-CoV-2Variante de preocupaçãoLixiviado de caminhão frescoSaúde PúblicaEpidemiologia baseada em lixiviados de resíduos sólidos municipaisVigilância epidemiológicaSARS-CoV-2Variant of concernFresh truck leachateMunicipal solid waste leachate-based epidemiologyPublic healthEpidemiological surveillanceSARS‑CoV‑2 surveillance‑based on municipal solid waste leachate in Brazilinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleFundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ, Brasil.Fundação Osvaldo Cruz. Escola Nacional deSaúde Pública Sergio Arouca. Departamento de Saneamento e Saúde Ambiental; Rio de Janeiro, RJ, Brasil.Fundação Osvaldo Cruz. Escola Nacional deSaúde Pública Sergio Arouca. Departamento de Saneamento e Saúde Ambiental; Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Vírus respiratório e do Sarampo. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Vírus respiratório e do Sarampo. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Vírus respiratório e do Sarampo. Rio de Janeiro, RJ, Brasil.COMLURB- Empresa Municipal de Limpeza Urbana - Unidade de Investigação Aplicada. Rio de Janeiro, RJ, Brasil.Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ, Brasil.Municipal solid waste leachate-based epidemiology is an alternative viral tracking tool that applies fresh truck leachate as an early warning of public health emergencies. This study aimed to investigate the potential of SARS-CoV-2 surveillance based on solid waste fresh truck leachate. Twenty truck leachate samples were ultracentrifugated, nucleic acid extracted, and real-time RT-qPCR SARS-CoV-2 N1/N2 applied. Viral isolation, variant of concern (N1/N2) inference, and whole genome sequencing were also performed. SARS-CoV-2 was detected on 40% (8/20) of samples, with a concentration from 2.89 to 6.96 RNA Log10 100 mL− 1. The attempt to isolate SARS-CoV-2 and recover the whole genome was not successful; however, positive samples were characterized as possible pre-variant of concern (pre-VOC), VOC Alpha (B.1.1.7) and variant of interest Zeta (P.2). This approach revealed an alternative tool to infer SARS-CoV-2 in the environment and may help the management of local surveillance, health, and social policies.info:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZORIGINALNataliaLanzarani_PaoloCristinaRezende_etal_IOC_2023.pdfNataliaLanzarani_PaoloCristinaRezende_etal_IOC_2023.pdfapplication/pdf2524295https://www.arca.fiocruz.br/bitstream/icict/58220/2/NataliaLanzarani_PaoloCristinaRezende_etal_IOC_2023.pdf61fb7426f1cf2607ad4aebcb4dc3fec4MD52LICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/58220/1/license.txt5a560609d32a3863062d77ff32785d58MD51icict/582202023-09-04 10:53:50.477oai:www.arca.fiocruz.br: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ório InstitucionalPUBhttps://www.arca.fiocruz.br/oai/requestrepositorio.arca@fiocruz.bropendoar:21352023-09-04T13:53:50Repositório Institucional da FIOCRUZ (ARCA) - 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| dc.title.en_US.fl_str_mv |
SARS‑CoV‑2 surveillance‑based on municipal solid waste leachate in Brazil |
| title |
SARS‑CoV‑2 surveillance‑based on municipal solid waste leachate in Brazil |
| spellingShingle |
SARS‑CoV‑2 surveillance‑based on municipal solid waste leachate in Brazil Lanzarini, Natália Maria SARS-CoV-2 Variante de preocupação Lixiviado de caminhão fresco Saúde Pública Epidemiologia baseada em lixiviados de resíduos sólidos municipais Vigilância epidemiológica SARS-CoV-2 Variant of concern Fresh truck leachate Municipal solid waste leachate-based epidemiology Public health Epidemiological surveillance |
| title_short |
SARS‑CoV‑2 surveillance‑based on municipal solid waste leachate in Brazil |
| title_full |
SARS‑CoV‑2 surveillance‑based on municipal solid waste leachate in Brazil |
| title_fullStr |
SARS‑CoV‑2 surveillance‑based on municipal solid waste leachate in Brazil |
| title_full_unstemmed |
SARS‑CoV‑2 surveillance‑based on municipal solid waste leachate in Brazil |
| title_sort |
SARS‑CoV‑2 surveillance‑based on municipal solid waste leachate in Brazil |
| author |
Lanzarini, Natália Maria |
| author_facet |
Lanzarini, Natália Maria Mannarino, Camille Ferreira Ribeiro, André Vinicius Costa Prado, Tatiana Vahia, Leonardo Saboia Siqueira, Marilda Mendonça Resende, Paola Cristina Quintaes, Bianca Ramalho Miagostovich, Marize Pereira |
| author_role |
author |
| author2 |
Mannarino, Camille Ferreira Ribeiro, André Vinicius Costa Prado, Tatiana Vahia, Leonardo Saboia Siqueira, Marilda Mendonça Resende, Paola Cristina Quintaes, Bianca Ramalho Miagostovich, Marize Pereira |
| author2_role |
author author author author author author author author |
| dc.contributor.author.fl_str_mv |
Lanzarini, Natália Maria Mannarino, Camille Ferreira Ribeiro, André Vinicius Costa Prado, Tatiana Vahia, Leonardo Saboia Siqueira, Marilda Mendonça Resende, Paola Cristina Quintaes, Bianca Ramalho Miagostovich, Marize Pereira |
| dc.subject.other.en_US.fl_str_mv |
SARS-CoV-2 Variante de preocupação Lixiviado de caminhão fresco Saúde Pública Epidemiologia baseada em lixiviados de resíduos sólidos municipais Vigilância epidemiológica |
| topic |
SARS-CoV-2 Variante de preocupação Lixiviado de caminhão fresco Saúde Pública Epidemiologia baseada em lixiviados de resíduos sólidos municipais Vigilância epidemiológica SARS-CoV-2 Variant of concern Fresh truck leachate Municipal solid waste leachate-based epidemiology Public health Epidemiological surveillance |
| dc.subject.en.en_US.fl_str_mv |
SARS-CoV-2 Variant of concern Fresh truck leachate Municipal solid waste leachate-based epidemiology Public health Epidemiological surveillance |
| description |
Fundação Oswaldo Cruz. Instituto Oswaldo Cruz. Laboratório de Virologia Comparada e Ambiental. Rio de Janeiro, RJ, Brasil. |
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2023 |
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2023-05-09T11:55:51Z |
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2023-05-09T11:55:51Z |
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2023 |
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info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/article |
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LANZARINI, Natália Maria et al. SARS‑CoV‑2 surveillance‑based on municipal solid waste leachate in Brazil. Environmental Science and Pollution Research. p. 1 - 10, April 2023. |
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https://www.arca.fiocruz.br/handle/icict/58220 |
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1614-7499 |
| dc.identifier.doi.none.fl_str_mv |
10.1007/s11356-023-27019-9 |
| identifier_str_mv |
LANZARINI, Natália Maria et al. SARS‑CoV‑2 surveillance‑based on municipal solid waste leachate in Brazil. Environmental Science and Pollution Research. p. 1 - 10, April 2023. 1614-7499 10.1007/s11356-023-27019-9 |
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Springer |
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