HTT-DB: new features and updates

Detalhes bibliográficos
Autor(a) principal: Dotto, Bruno Reis
Data de Publicação: 2018
Outros Autores: Carvalho, Evelise Leis, Silva, Alexandre Freitas da, Dezordi, Filipe Zimmer, Pinto, Paulo Marcos, Campos, Tulio de Lima, Rezende, Antonio Mauro, Wallau, Gabriel da Luz
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo: https://www.arca.fiocruz.br/handle/icict/33146
Resumo: Universidade Federal do Pampa. Campus São Gabriel. São Gabriel, RS, Brasil.
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spelling Dotto, Bruno ReisCarvalho, Evelise LeisSilva, Alexandre Freitas daDezordi, Filipe ZimmerPinto, Paulo MarcosCampos, Tulio de LimaRezende, Antonio MauroWallau, Gabriel da Luz2019-05-20T15:40:42Z2019-05-20T15:40:42Z2018DOTTO, Bruno Reis et al. HTT-DB: New Features and Updates. Database: The Journal of Biological Databases and Curation, v. 2018, p. 1-5, 2018.1758-0463https://www.arca.fiocruz.br/handle/icict/3314610.1093/database/bax10210.1093/database/bax102engHTT-DB: new features and updatesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleUniversidade Federal do Pampa. Campus São Gabriel. São Gabriel, RS, Brasil.Universidade Federal do Pampa. Pós Graduation in Biological Sciences. São Gabriel, RS, Brasil.Fundação Oswaldo Cruz. Instituto Aggeu Magalhães. Pós-Graduação em Biociências e Biotecnologia em Saúde. Recife, PE, Brasil.Universidade Federal do Pampa. Campus São Gabriel. São Gabriel, RS, Brasil / Fundação Oswaldo Cruz. Instituto Aggeu Magalhães. Pós-Graduação em Biociências e Biotecnologia em Saúde. Recife, PE, Brasil.Universidade Federal do Pampa. Campus São Gabriel. São Gabriel, RS, Brasil / Universidade Federal do Pampa. Pós Graduation in Biological Sciences. São Gabriel, RS, Brasil.Fundação Oswaldo Cruz. Instituto Aggeu Magalhães. Núcleo Bioinformático. Recife, PE, Brasil.Fundação Oswaldo Cruz. Instituto Aggeu Magalhães. Departamento de Microbiologia. Recife, PE, Brasil.Fundação Oswaldo Cruz. Instituto Aggeu Magalhães. Departamento de Entomologia. Recife, PE, Brasil.Horizontal Transfer (HT) of genetic material between species is a common phenomenon among Bacteria and Archaea species and several databases are available for information retrieval and data mining. However, little attention has been given to this phenomenon among eukaryotic species mainly due to the lower proportion of these events. In the last years, a vertiginous amount of new HT events involving eukaryotic species was reported in the literature, highlighting the need of a common repository to keep the scientific community up to date and describe overall trends. Recently, we published the first HT database focused on HT of transposable elements among eukaryotes: the Horizontal Transposon Transfer DataBase (http://lpa.saogabriel.unipampa.edu.br: 8080/httdatabase/). Here, we present new features and updates of this unique database: (i) its expansion to include virus-host exchange of genetic material, which we called Horizontal Virus Transfer (HVT) and (ii) the availability of a web server for HT detection, where we implemented the online version of vertical and horizontal inheritance consistence analysis (VHICA), an R package developed for HT detection. These improvements will help researchers to navigate through known HVT cases, take data-informed decision and export figures based on keywords searches. Moreover, the availability of the VHICA as an online tool will make this software easily reachable even for researchers with no or little computation knowledge as well as foster our capability to detect new HT events in a wide variety of taxa. (Database URL: http://lpa.saogabriel.unipampa.edu.br:8080/httdatabase/).DNA Transposable ElementsDatabases, GeneticEukaryotaGene Transfer, HorizontalTransduction, GeneticElementos Transponíveis de DNAEukaryotaBancos de Dados GenéticosInternetTransdução Genéticainfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-83094https://www.arca.fiocruz.br/bitstream/icict/33146/1/license.txtee3692f7b0b97d5638099ab94397d05fMD51ORIGINALHTT-DB new features and update.pdfHTT-DB new features and update.pdfapplication/pdf559852https://www.arca.fiocruz.br/bitstream/icict/33146/2/HTT-DB%20new%20features%20and%20update.pdf035736cc7ecc6b33042ebc2bfaf0c49dMD52TEXTHTT-DB new features and update.pdf.txtHTT-DB new features and update.pdf.txtExtracted 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dc.title.pt_BR.fl_str_mv HTT-DB: new features and updates
title HTT-DB: new features and updates
spellingShingle HTT-DB: new features and updates
Dotto, Bruno Reis
DNA Transposable Elements
Databases, Genetic
Eukaryota
Gene Transfer, Horizontal
Transduction, Genetic
Elementos Transponíveis de DNA
Eukaryota
Bancos de Dados Genéticos
Internet
Transdução Genética
title_short HTT-DB: new features and updates
title_full HTT-DB: new features and updates
title_fullStr HTT-DB: new features and updates
title_full_unstemmed HTT-DB: new features and updates
title_sort HTT-DB: new features and updates
author Dotto, Bruno Reis
author_facet Dotto, Bruno Reis
Carvalho, Evelise Leis
Silva, Alexandre Freitas da
Dezordi, Filipe Zimmer
Pinto, Paulo Marcos
Campos, Tulio de Lima
Rezende, Antonio Mauro
Wallau, Gabriel da Luz
author_role author
author2 Carvalho, Evelise Leis
Silva, Alexandre Freitas da
Dezordi, Filipe Zimmer
Pinto, Paulo Marcos
Campos, Tulio de Lima
Rezende, Antonio Mauro
Wallau, Gabriel da Luz
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Dotto, Bruno Reis
Carvalho, Evelise Leis
Silva, Alexandre Freitas da
Dezordi, Filipe Zimmer
Pinto, Paulo Marcos
Campos, Tulio de Lima
Rezende, Antonio Mauro
Wallau, Gabriel da Luz
dc.subject.en.pt_BR.fl_str_mv DNA Transposable Elements
Databases, Genetic
Eukaryota
Gene Transfer, Horizontal
Transduction, Genetic
topic DNA Transposable Elements
Databases, Genetic
Eukaryota
Gene Transfer, Horizontal
Transduction, Genetic
Elementos Transponíveis de DNA
Eukaryota
Bancos de Dados Genéticos
Internet
Transdução Genética
dc.subject.decs.pt_BR.fl_str_mv Elementos Transponíveis de DNA
Eukaryota
Bancos de Dados Genéticos
Internet
Transdução Genética
description Universidade Federal do Pampa. Campus São Gabriel. São Gabriel, RS, Brasil.
publishDate 2018
dc.date.issued.fl_str_mv 2018
dc.date.accessioned.fl_str_mv 2019-05-20T15:40:42Z
dc.date.available.fl_str_mv 2019-05-20T15:40:42Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv DOTTO, Bruno Reis et al. HTT-DB: New Features and Updates. Database: The Journal of Biological Databases and Curation, v. 2018, p. 1-5, 2018.
dc.identifier.uri.fl_str_mv https://www.arca.fiocruz.br/handle/icict/33146
dc.identifier.issn.pt_BR.fl_str_mv 1758-0463
dc.identifier.doi.pt_BR.fl_str_mv 10.1093/database/bax102
dc.identifier.eissn.none.fl_str_mv 10.1093/database/bax102
identifier_str_mv DOTTO, Bruno Reis et al. HTT-DB: New Features and Updates. Database: The Journal of Biological Databases and Curation, v. 2018, p. 1-5, 2018.
1758-0463
10.1093/database/bax102
url https://www.arca.fiocruz.br/handle/icict/33146
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da FIOCRUZ (ARCA)
instname:Fundação Oswaldo Cruz (FIOCRUZ)
instacron:FIOCRUZ
instname_str Fundação Oswaldo Cruz (FIOCRUZ)
instacron_str FIOCRUZ
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collection Repositório Institucional da FIOCRUZ (ARCA)
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