Genomics of Ecological Adaptation in Cactophilic Drosophila

Guillen, Yolanda; Rius, Nuria; Delprat, Alejandra; Williford, Anna; Muyas, Francesc; Puig, Marta; Casillas, Sonia; Ramia, Miquel; Egea, Raquel; Negre, Barbara; Mir, Gisela; Camps, Jordi; Moncunill, Valentı; Ruiz-Ruano, Francisco J.; Cabrero, Josefa; Lima, Leonardo G. de; Dias, Guilherme B.; Ruiz, Jeronimo Conceição; Kapusta, Aure lie; Garcia-Mas, Jordi; Gut, Marta; Gut, Ivo G.; Torrents, David; Camacho, Juan P.; Kuhn, Gustavo Campos e Silva; Feschotte, Cedric; Clark, Andrew G; Betran, Esther; Barbadilla, Antonio; Ruiz, Alfredo

Genomics of Ecological Adaptation in Cactophilic Drosophila

Detalhes bibliográficos
Autor(a) principal:	Guillen, Yolanda
Data de Publicação:	2014
Outros Autores:	Rius, Nuria, Delprat, Alejandra, Williford, Anna, Muyas, Francesc, Puig, Marta, Casillas, Sonia, Ramia, Miquel, Egea, Raquel, Negre, Barbara, Mir, Gisela, Camps, Jordi, Moncunill, Valentı, Ruiz-Ruano, Francisco J., Cabrero, Josefa, Lima, Leonardo G. de, Dias, Guilherme B., Ruiz, Jeronimo Conceição, Kapusta, Aure lie, Garcia-Mas, Jordi, Gut, Marta, Gut, Ivo G., Torrents, David, Camacho, Juan P., Kuhn, Gustavo Campos e Silva, Feschotte, Cedric, Clark, Andrew G, Betran, Esther, Barbadilla, Antonio, Ruiz, Alfredo
Tipo de documento:	Artigo
Idioma:	por
Título da fonte:	Repositório Institucional da FIOCRUZ (ARCA)
Texto Completo:	https://www.arca.fiocruz.br/handle/icict/12687
Resumo:	Universitat Autonoma de Barcelona. Departamento de Genetica i de Microbiologia. Barcelona, Spain

Metadados do item

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spelling	Guillen, YolandaRius, NuriaDelprat, AlejandraWilliford, AnnaMuyas, FrancescPuig, MartaCasillas, SoniaRamia, MiquelEgea, RaquelNegre, BarbaraMir, GiselaCamps, JordiMoncunill, ValentıRuiz-Ruano, Francisco J.Cabrero, JosefaLima, Leonardo G. deDias, Guilherme B.Ruiz, Jeronimo ConceiçãoKapusta, Aure lieGarcia-Mas, JordiGut, MartaGut, Ivo G.Torrents, DavidCamacho, Juan P.Kuhn, Gustavo Campos e SilvaFeschotte, CedricClark, Andrew GBetran, EstherBarbadilla, AntonioRuiz, Alfredo2016-02-02T16:46:03Z2016-02-02T16:46:03Z2014GUILLEN, Yolanda et al. Genomics of Ecological Adaptation in Cactophilic Drosophila. Genome Biol Evol., vol. 7, n. 1, p. 349-366, 20151759-6653https://www.arca.fiocruz.br/handle/icict/1268710.1093/gbe/evu291porOxford JournalsGenomics of Ecological Adaptation in Cactophilic Drosophilainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleUniversitat Autonoma de Barcelona. Departamento de Genetica i de Microbiologia. Barcelona, SpainUniversitat Autonoma de Barcelona. Departamento de Genetica i de Microbiologia. Barcelona, SpainUniversitat Autonoma de Barcelona. Departamento de Genetica i de Microbiologia. Barcelona, SpainUniversity of Texas at Arlington. Department of Biology.Universitat Autonoma de Barcelona. Departamento de Genetica i de Microbiologia. Barcelona, SpainUniversitat Autonoma de Barcelona. Departamento de Genetica i de Microbiologia. Barcelona, SpainUniversitat Autonoma de Barcelona. Departamento de Genetica i de Microbiologia. Barcelona, Spain/Universitat Autonoma de Barcelona. Institut de Biotecnologia i de Biomedicina. SpainUniversitat Autonoma de Barcelona. Departamento de Genetica i de Microbiologia. Barcelona, Spain/Universitat Autonoma de Barcelona. Institut de Biotecnologia i de Biomedicina. SpainUniversitat Autonoma de Barcelona. Departamento de Genetica i de Microbiologia. Barcelona, Spain/Universitat Autonoma de Barcelona. Institut de Biotecnologia i de Biomedicina. SpainCentre for Genomic Regulation. EMBL/CRG Research Unit in Systems Biology. Barcelona, Spain/Universitat Pompeu Fabra. Barcelona, SpainIRTA. Centre for Research in Agricultural . Barcelona, Spain/The Peter MacCallum Cancer Centre. East Melbourne, Victoria, AustraliaCentro Nacional de Analisis Genomico. Parc Cientı´fic de Barcelona. Barcelona, SpainBarcelona Supercomputing Center. Barcelona, Spain/Institucion Catalana de Recerca i Estudis Avancats. Barcelona, SpainUniversidad de Granada. Facultad de Ciencias. Departamento de Genetica. SpainUniversidad de Granada. Facultad de Ciencias. Departamento de Genetica. SpainUniversidade Federal de Minas Gerais. Instituto de Ciencias Biologicas. Departamento de Biologia Geral. Belo Horizonte, MG, BrasilUniversidade Federal de Minas Gerais. Instituto de Ciencias Biologicas. Departamento de Biologia Geral. Belo Horizonte, MG, BrasilFundação Oswaldo Cruz. Centro de Pesquisas Rene´ Rachou. Informatica de Biossistemas. Belo Horizonte, MG, BrasilUniversity of Utah School of Medicine. Department of Human Genetics.IRTA. Centre for Research in Agricultural . Barcelona, SpainCentro Nacional de Analisis Genomico. Parc Cientı´fic de Barcelona. Barcelona, SpainCentro Nacional de Analisis Genomico. Parc Cientı´fic de Barcelona. Barcelona, SpainBarcelona Supercomputing Center. Barcelona, Spain/Institucion Catalana de Recerca i Estudis Avancats. Barcelona, SpainUniversidad de Granada. Facultad de Ciencias. Departamento de Genetica. SpainUniversidade Federal de Minas Gerais. Instituto de Ciencias Biologicas. Departamento de Biologia Geral. Belo Horizonte, MG, BrasilUniversity of Utah School of Medicine. Department of Human Genetics.Cornell University. Department of Molecular Biology and Genetics.University of Texas at Arlington. Department of Biology.Universitat Autonoma de Barcelona. Departamento de Genetica i de Microbiologia. Barcelona, Spain/Universitat Autonoma de Barcelona. Institut de Biotecnologia i de Biomedicina. SpainUniversitat Autonoma de Barcelona. Departamento de Genetica i de Microbiologia. Barcelona, SpainCactophilic Drosophila species provide a valuable model to study gene–environment interactions and ecological adaptation. Drosophila buzzatii and Drosophila mojavensis are two cactophilic species that belong to the replet a group, but have very different geographical distributions and primary host plants. To investigate the genomic basis of ecological adaptation, we sequenced the genome and developmental transcriptome of D. buzzatii and compared its gene content with that of D. mojavensis and two other noncactophilic Drosophila species in the same subgenus. The newly sequenced D. buzzatii genome (161.5Mb) comprises 826 scaffolds (>3 kb) and contains 13,657 annotated protein-coding genes. Using RNA sequencing data of five life-stages we found expression of 15,026 genes, 80% protein-coding genes, and 20% noncoding RNA genes. In total, we detected 1,294 genes putatively under positive selection. Interestingly, among genes under positive selection in the D. mojavensis lineage, there is na excess of genes involved inmetabolism of heterocyclic compounds that are abundant in Stenocereus cacti and toxic to nonresident Drosophila species. We found 117 orphangenes in the shared D. buzzatii–D. mojavensis lineage. In addition, gene duplication analysis identified lineage-specific expanded families with functional annotations associated with proteolysis, zinc ion binding, chitin binding, sensory perception, ethanol tolerance, immunity, physiology, and reproduction. In summary, we identified genetic signatures of adaptation in the shared D. buzzatii–D. mojavensis lineage, and in the two separate D. buzzatii and D.mojavensis lineages. Many of the novel lineage-specific genomic features are promising candidates for explaining the adaptation of these species to their distinct ecological niches.cactophilic Drosophilagenome sequenceecological adaptationpositive selectionorphan genesgeneinfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da FIOCRUZ (ARCA)instname:Fundação Oswaldo Cruz (FIOCRUZ)instacron:FIOCRUZLICENSElicense.txtlicense.txttext/plain; charset=utf-82991https://www.arca.fiocruz.br/bitstream/icict/12687/1/license.txt5a560609d32a3863062d77ff32785d58MD51ORIGINALGenomics of Ecological Adaptation in Cactophilic Drosophila.pdfGenomics of Ecological Adaptation in Cactophilic Drosophila.pdfapplication/pdf12586086https://www.arca.fiocruz.br/bitstream/icict/12687/2/Genomics%20of%20Ecological%20Adaptation%20in%20Cactophilic%20Drosophila.pdf9853350b21853614282c2d1a7f1c36a4MD52TEXTGenomics of Ecological Adaptation in Cactophilic Drosophila.pdf.txtGenomics of Ecological Adaptation in Cactophilic 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dc.title.pt_BR.fl_str_mv	Genomics of Ecological Adaptation in Cactophilic Drosophila
title	Genomics of Ecological Adaptation in Cactophilic Drosophila
spellingShingle	Genomics of Ecological Adaptation in Cactophilic Drosophila Guillen, Yolanda cactophilic Drosophila genome sequence ecological adaptation positive selection orphan genes gene
title_short	Genomics of Ecological Adaptation in Cactophilic Drosophila
title_full	Genomics of Ecological Adaptation in Cactophilic Drosophila
title_fullStr	Genomics of Ecological Adaptation in Cactophilic Drosophila
title_full_unstemmed	Genomics of Ecological Adaptation in Cactophilic Drosophila
title_sort	Genomics of Ecological Adaptation in Cactophilic Drosophila
author	Guillen, Yolanda
author_facet	Guillen, Yolanda Rius, Nuria Delprat, Alejandra Williford, Anna Muyas, Francesc Puig, Marta Casillas, Sonia Ramia, Miquel Egea, Raquel Negre, Barbara Mir, Gisela Camps, Jordi Moncunill, Valentı Ruiz-Ruano, Francisco J. Cabrero, Josefa Lima, Leonardo G. de Dias, Guilherme B. Ruiz, Jeronimo Conceição Kapusta, Aure lie Garcia-Mas, Jordi Gut, Marta Gut, Ivo G. Torrents, David Camacho, Juan P. Kuhn, Gustavo Campos e Silva Feschotte, Cedric Clark, Andrew G Betran, Esther Barbadilla, Antonio Ruiz, Alfredo
author_role	author
author2	Rius, Nuria Delprat, Alejandra Williford, Anna Muyas, Francesc Puig, Marta Casillas, Sonia Ramia, Miquel Egea, Raquel Negre, Barbara Mir, Gisela Camps, Jordi Moncunill, Valentı Ruiz-Ruano, Francisco J. Cabrero, Josefa Lima, Leonardo G. de Dias, Guilherme B. Ruiz, Jeronimo Conceição Kapusta, Aure lie Garcia-Mas, Jordi Gut, Marta Gut, Ivo G. Torrents, David Camacho, Juan P. Kuhn, Gustavo Campos e Silva Feschotte, Cedric Clark, Andrew G Betran, Esther Barbadilla, Antonio Ruiz, Alfredo
author2_role	author author author author author author author author author author author author author author author author author author author author author author author author author author author author author
dc.contributor.author.fl_str_mv	Guillen, Yolanda Rius, Nuria Delprat, Alejandra Williford, Anna Muyas, Francesc Puig, Marta Casillas, Sonia Ramia, Miquel Egea, Raquel Negre, Barbara Mir, Gisela Camps, Jordi Moncunill, Valentı Ruiz-Ruano, Francisco J. Cabrero, Josefa Lima, Leonardo G. de Dias, Guilherme B. Ruiz, Jeronimo Conceição Kapusta, Aure lie Garcia-Mas, Jordi Gut, Marta Gut, Ivo G. Torrents, David Camacho, Juan P. Kuhn, Gustavo Campos e Silva Feschotte, Cedric Clark, Andrew G Betran, Esther Barbadilla, Antonio Ruiz, Alfredo
dc.subject.en.pt_BR.fl_str_mv	cactophilic Drosophila genome sequence ecological adaptation positive selection orphan genes gene
topic	cactophilic Drosophila genome sequence ecological adaptation positive selection orphan genes gene
description	Universitat Autonoma de Barcelona. Departamento de Genetica i de Microbiologia. Barcelona, Spain
publishDate	2014
dc.date.issued.fl_str_mv	2014
dc.date.accessioned.fl_str_mv	2016-02-02T16:46:03Z
dc.date.available.fl_str_mv	2016-02-02T16:46:03Z
dc.type.status.fl_str_mv	info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv	info:eu-repo/semantics/article
format	article
status_str	publishedVersion
dc.identifier.citation.fl_str_mv	GUILLEN, Yolanda et al. Genomics of Ecological Adaptation in Cactophilic Drosophila. Genome Biol Evol., vol. 7, n. 1, p. 349-366, 2015
dc.identifier.uri.fl_str_mv	https://www.arca.fiocruz.br/handle/icict/12687
dc.identifier.issn.none.fl_str_mv	1759-6653
dc.identifier.doi.none.fl_str_mv	10.1093/gbe/evu291
identifier_str_mv	GUILLEN, Yolanda et al. Genomics of Ecological Adaptation in Cactophilic Drosophila. Genome Biol Evol., vol. 7, n. 1, p. 349-366, 2015 1759-6653 10.1093/gbe/evu291
url	https://www.arca.fiocruz.br/handle/icict/12687
dc.language.iso.fl_str_mv	por
language	por
dc.rights.driver.fl_str_mv	info:eu-repo/semantics/openAccess
eu_rights_str_mv	openAccess
dc.publisher.none.fl_str_mv	Oxford Journals
publisher.none.fl_str_mv	Oxford Journals
dc.source.none.fl_str_mv	reponame:Repositório Institucional da FIOCRUZ (ARCA) instname:Fundação Oswaldo Cruz (FIOCRUZ) instacron:FIOCRUZ
instname_str	Fundação Oswaldo Cruz (FIOCRUZ)
instacron_str	FIOCRUZ
institution	FIOCRUZ
reponame_str	Repositório Institucional da FIOCRUZ (ARCA)
collection	Repositório Institucional da FIOCRUZ (ARCA)
bitstream.url.fl_str_mv	https://www.arca.fiocruz.br/bitstream/icict/12687/1/license.txt https://www.arca.fiocruz.br/bitstream/icict/12687/2/Genomics%20of%20Ecological%20Adaptation%20in%20Cactophilic%20Drosophila.pdf https://www.arca.fiocruz.br/bitstream/icict/12687/3/Genomics%20of%20Ecological%20Adaptation%20in%20Cactophilic%20Drosophila.pdf.txt
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bitstream.checksumAlgorithm.fl_str_mv	MD5 MD5 MD5
repository.name.fl_str_mv	Repositório Institucional da FIOCRUZ (ARCA) - Fundação Oswaldo Cruz (FIOCRUZ)
repository.mail.fl_str_mv	repositorio.arca@fiocruz.br
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Genomics of Ecological Adaptation in Cactophilic Drosophila

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